Wall clock time and date at job start Mon Mar 8 2021 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40077 * 126.13130 * 2 1 4 4 C 1.30877 * 108.51623 * 180.17016 * 3 2 1 5 5 C 1.50700 * 125.70629 * 179.85518 * 4 3 2 6 6 O 1.42894 * 109.46867 * 179.69338 * 5 4 3 7 7 Si 1.63104 * 113.99909 * 179.97438 * 6 5 4 8 8 C 1.86305 * 109.47233 * 299.99978 * 7 6 5 9 9 C 1.86299 * 109.47099 * 59.99963 * 7 6 5 10 10 C 1.86302 * 109.47358 * 179.97438 * 7 6 5 11 11 C 1.53002 * 109.46821 * 60.00273 * 10 7 6 12 12 C 1.52997 * 109.47335 * 179.97438 * 10 7 6 13 13 C 1.52995 * 109.47135 * 300.00449 * 10 7 6 14 14 C 1.39540 * 108.58602 * 359.58686 * 4 3 2 15 15 C 1.36259 * 126.13521 * 179.71104 * 2 1 3 16 16 C 1.47986 * 126.33897 * 0.02562 * 15 2 1 17 17 C 1.34733 * 122.79542 * 341.63007 * 16 15 2 18 18 S 1.75848 * 109.53089 * 179.86929 * 17 16 15 19 19 C 1.75807 * 91.17477 * 0.33267 * 18 17 16 20 20 C 1.50699 * 125.01159 * 179.82982 * 19 18 17 21 21 O 1.42897 * 109.46843 * 119.97932 * 20 19 18 22 22 Si 1.86298 * 109.47399 * 359.97438 * 20 19 18 23 23 H 1.48506 * 109.46693 * 60.00056 * 22 20 19 24 24 H 1.48497 * 109.47115 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47429 * 300.00211 * 22 20 19 26 26 C 1.33001 * 109.97354 * 359.81182 * 19 18 17 27 27 H 1.09002 * 109.46746 * 264.04664 * 1 2 3 28 28 H 1.09000 * 109.46729 * 24.04906 * 1 2 3 29 29 H 1.09003 * 109.46629 * 144.04722 * 1 2 3 30 30 H 1.09002 * 109.46472 * 299.68812 * 5 4 3 31 31 H 1.08992 * 109.47539 * 59.69040 * 5 4 3 32 32 H 1.08999 * 109.46751 * 59.99756 * 8 7 6 33 33 H 1.08999 * 109.47041 * 179.97438 * 8 7 6 34 34 H 1.08994 * 109.46916 * 300.00134 * 8 7 6 35 35 H 1.09004 * 109.47031 * 59.99631 * 9 7 6 36 36 H 1.08999 * 109.47342 * 179.97438 * 9 7 6 37 37 H 1.09009 * 109.47178 * 300.00218 * 9 7 6 38 38 H 1.08994 * 109.47368 * 59.99827 * 11 10 7 39 39 H 1.09004 * 109.47098 * 180.02562 * 11 10 7 40 40 H 1.09001 * 109.46942 * 299.99341 * 11 10 7 41 41 H 1.09005 * 109.46903 * 59.99810 * 12 10 7 42 42 H 1.08999 * 109.47428 * 180.02562 * 12 10 7 43 43 H 1.09002 * 109.46990 * 299.99952 * 12 10 7 44 44 H 1.09002 * 109.47587 * 59.99431 * 13 10 7 45 45 H 1.08997 * 109.47308 * 180.02562 * 13 10 7 46 46 H 1.09001 * 109.47061 * 299.99609 * 13 10 7 47 47 H 1.08000 * 126.08202 * 180.24290 * 14 4 3 48 48 H 1.07996 * 125.23593 * 359.97161 * 17 16 15 49 49 H 1.09001 * 109.47006 * 239.97678 * 20 19 18 50 50 H 0.96701 * 113.99994 * 299.99820 * 21 20 19 51 51 H 1.08004 * 122.54213 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2910 1.1314 0.0000 4 6 3.5384 0.7353 -0.0037 5 6 4.7470 1.6355 -0.0081 6 8 5.9337 0.8395 -0.0041 7 14 7.3146 1.7074 -0.0090 8 6 7.3728 2.7733 -1.5359 9 6 7.3734 2.7895 1.5063 10 6 8.7751 0.5508 -0.0024 11 6 8.7272 -0.3383 -1.2467 12 6 10.0705 1.3649 -0.0077 13 6 8.7271 -0.3242 1.2517 14 6 3.5621 -0.6599 0.0034 15 6 2.2685 -1.1004 0.0056 16 6 1.8229 -2.5116 0.0121 17 6 0.5780 -2.8821 0.3704 18 16 0.4267 -4.6298 0.2479 19 6 2.0961 -4.7733 -0.2842 20 6 2.7879 -6.0692 -0.6207 21 8 3.2257 -6.0362 -1.9806 22 14 1.6018 -7.4861 -0.3843 23 1 0.4294 -7.3044 -1.2775 24 1 2.2834 -8.7629 -0.7165 25 1 1.1468 -7.5204 1.0288 26 6 2.6583 -3.5696 -0.3463 27 1 -0.3633 -0.1066 1.0222 28 1 -0.3633 0.9385 -0.4188 29 1 -0.3633 -0.8319 -0.6034 30 1 4.7314 2.2601 -0.9013 31 1 4.7315 2.2690 0.8786 32 1 6.5183 3.4500 -1.5393 33 1 8.2955 3.3536 -1.5389 34 1 7.3384 2.1402 -2.4225 35 1 7.3393 2.1658 2.3997 36 1 8.2965 3.3692 1.5033 37 1 6.5189 3.4663 1.5029 38 1 8.7613 0.2850 -2.1402 39 1 9.5814 -1.0154 -1.2426 40 1 7.8043 -0.9184 -1.2433 41 1 10.1049 1.9987 0.8785 42 1 10.9250 0.6882 -0.0043 43 1 10.1045 1.9879 -0.9015 44 1 7.8042 -0.9042 1.2551 45 1 9.5818 -1.0006 1.2559 46 1 8.7613 0.3092 2.1382 47 1 4.4456 -1.2810 0.0062 48 1 -0.2067 -2.2092 0.6829 49 1 3.6485 -6.2025 0.0349 50 1 2.5108 -5.9196 -2.6212 51 1 3.6840 -3.4224 -0.6508 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13019922_15493832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:06:28 Heat of formation + Delta-G solvation = -13.652798 kcal Electronic energy + Delta-G solvation = -29063.665848 eV Core-core repulsion = 25215.099622 eV Total energy + Delta-G solvation = -3848.566225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.150 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.28657 -39.37569 -38.05141 -37.43255 -36.78027 -34.42637 -32.22496 -30.63711 -29.44368 -29.01378 -28.91619 -27.78411 -27.32562 -26.97990 -26.07429 -24.49112 -21.89372 -20.91788 -20.34802 -20.09965 -18.65907 -17.78024 -17.60912 -17.36618 -16.82168 -16.28431 -16.07109 -15.91369 -15.79399 -15.48293 -15.40039 -14.80232 -14.77502 -14.65508 -14.48901 -14.23238 -14.01500 -13.93091 -13.70126 -13.61448 -13.39656 -13.33265 -13.17397 -13.13410 -12.93239 -12.89729 -12.85599 -12.49030 -12.35100 -12.34603 -12.14137 -11.98211 -11.78941 -11.63392 -11.58999 -11.56522 -11.36970 -10.76900 -10.49247 -10.30541 -10.01598 -9.81584 -9.65561 -9.04897 -0.37298 0.37313 0.59310 0.67597 1.10806 1.25585 1.39627 1.47320 1.51598 1.66897 1.83165 1.88874 2.11352 2.16556 2.49575 3.34424 3.51551 3.59354 3.72400 3.95901 4.04674 4.17376 4.17945 4.23790 4.29077 4.30966 4.44230 4.47863 4.54487 4.56614 4.58602 4.74787 4.78520 4.79720 4.82587 4.83197 4.83833 4.87817 4.89067 5.05981 5.06294 5.11740 5.14922 5.15316 5.24615 5.30349 5.38544 5.44245 5.46911 5.52674 5.60973 5.66741 5.69036 5.98383 6.64020 6.64838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.372 5.372 3 N -0.314 5.314 4 C 0.060 3.940 5 C 0.165 3.835 6 O -0.631 6.631 7 Si 1.323 2.677 8 C -0.520 4.520 9 C -0.520 4.520 10 C -0.378 4.378 11 C -0.137 4.137 12 C -0.141 4.141 13 C -0.137 4.137 14 C -0.236 4.236 15 C 0.129 3.871 16 C -0.055 4.055 17 C -0.198 4.198 18 S 0.123 5.877 19 C -0.217 4.217 20 C -0.037 4.037 21 O -0.545 6.545 22 Si 0.919 3.081 23 H -0.236 1.236 24 H -0.242 1.242 25 H -0.240 1.240 26 C -0.088 4.088 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.159 0.841 48 H 0.188 0.812 49 H 0.136 0.864 50 H 0.390 0.610 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 -0.899 0.110 2.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.156 5.156 3 N -0.139 5.139 4 C -0.104 4.104 5 C 0.088 3.912 6 O -0.589 6.589 7 Si 1.453 2.547 8 C -0.621 4.621 9 C -0.621 4.621 10 C -0.421 4.421 11 C -0.194 4.194 12 C -0.198 4.198 13 C -0.194 4.194 14 C -0.265 4.265 15 C 0.001 3.999 16 C -0.069 4.069 17 C -0.335 4.335 18 S 0.389 5.611 19 C -0.334 4.334 20 C -0.150 4.150 21 O -0.352 6.352 22 Si 0.740 3.260 23 H -0.159 1.159 24 H -0.165 1.165 25 H -0.164 1.164 26 C -0.118 4.118 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.177 0.823 48 H 0.206 0.794 49 H 0.154 0.846 50 H 0.240 0.760 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.674 -1.983 0.767 5.135 hybrid contribution 1.708 1.199 -0.459 2.137 sum -2.965 -0.784 0.307 3.083 Atomic orbital electron populations 1.22365 0.72531 1.06051 1.04627 1.48904 1.07307 1.02269 1.57112 1.77174 1.01431 1.08368 1.26939 1.22322 0.93020 0.95036 1.00035 1.20101 0.79459 0.88673 1.02966 1.85238 1.27764 1.54162 1.91734 0.76116 0.55240 0.58749 0.64593 1.27111 1.05074 1.11501 1.18433 1.27115 1.05068 1.11716 1.18226 1.25863 1.11747 1.06658 0.97833 1.21547 1.01758 0.99420 0.96721 1.21608 0.96185 0.99723 1.02314 1.21544 1.01742 0.99508 0.96643 1.21352 0.96091 0.94379 1.14705 1.19371 0.90813 0.87018 1.02736 1.17054 0.94127 0.90038 1.05717 1.26325 1.00747 0.99154 1.07310 1.84400 1.09730 1.01828 1.65190 1.24846 0.97633 1.00176 1.10735 1.24426 1.06029 0.97617 0.86893 1.86521 1.38487 1.95733 1.14488 0.85927 0.78522 0.78970 0.82630 1.15857 1.16467 1.16367 1.19963 1.01612 0.89847 1.00401 0.88922 0.88195 0.87765 0.89357 0.89391 0.91047 0.90189 0.91136 0.91158 0.90187 0.91048 0.92153 0.93332 0.92419 0.91786 0.93105 0.91783 0.92425 0.93322 0.92170 0.82328 0.79447 0.84647 0.76048 0.83069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.25 9.78 127.77 1.25 1.00 16 2 N -0.37 -2.12 4.05 -356.88 -1.45 -3.57 16 3 N -0.31 -2.96 12.56 -47.57 -0.60 -3.56 16 4 C 0.06 0.46 7.16 43.02 0.31 0.77 16 5 C 0.17 0.39 5.74 71.24 0.41 0.80 16 6 O -0.63 -1.15 7.88 -148.98 -1.17 -2.33 16 7 Si 1.32 -2.54 8.45 68.60 0.58 -1.96 16 8 C -0.52 0.74 8.50 113.37 0.96 1.70 16 9 C -0.52 0.74 8.50 113.37 0.96 1.70 16 10 C -0.38 0.13 0.53 -10.80 -0.01 0.12 16 11 C -0.14 -0.11 7.84 71.98 0.56 0.46 16 12 C -0.14 0.17 7.85 71.98 0.56 0.74 16 13 C -0.14 -0.10 7.85 71.98 0.56 0.46 16 14 C -0.24 -1.76 9.70 22.21 0.22 -1.55 16 15 C 0.13 0.78 6.82 40.67 0.28 1.05 16 16 C -0.05 -0.14 5.76 -21.20 -0.12 -0.26 16 17 C -0.20 0.23 9.77 67.02 0.65 0.88 16 18 S 0.12 -0.18 20.53 -56.49 -1.16 -1.34 16 19 C -0.22 0.10 5.70 24.52 0.14 0.24 16 20 C -0.04 0.08 2.96 71.24 0.21 0.30 16 21 O -0.55 0.50 12.85 -148.98 -1.91 -1.41 16 22 Si 0.92 -2.13 26.23 68.60 1.80 -0.33 16 23 H -0.24 0.53 7.11 99.48 0.71 1.24 16 24 H -0.24 -0.03 7.11 99.48 0.71 0.68 16 25 H -0.24 0.28 7.11 99.48 0.71 0.99 16 26 C -0.09 -0.14 9.57 21.40 0.20 0.06 16 27 H 0.09 -0.58 7.88 -2.39 -0.02 -0.60 16 28 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.10 -0.68 6.52 -2.39 -0.02 -0.69 16 30 H 0.09 -0.06 7.21 -2.39 -0.02 -0.08 16 31 H 0.09 -0.06 7.21 -2.39 -0.02 -0.07 16 32 H 0.07 -0.14 7.48 -2.39 -0.02 -0.16 16 33 H 0.08 -0.19 7.79 -2.39 -0.02 -0.21 16 34 H 0.07 -0.04 7.79 -2.39 -0.02 -0.06 16 35 H 0.07 -0.04 7.79 -2.39 -0.02 -0.05 16 36 H 0.08 -0.19 7.79 -2.39 -0.02 -0.21 16 37 H 0.07 -0.14 7.48 -2.38 -0.02 -0.16 16 38 H 0.06 -0.03 7.80 -2.39 -0.02 -0.05 16 39 H 0.05 0.08 8.14 -2.38 -0.02 0.06 16 40 H 0.06 0.08 7.97 -2.39 -0.02 0.06 16 41 H 0.06 -0.18 7.79 -2.38 -0.02 -0.19 16 42 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 44 H 0.06 0.08 7.97 -2.39 -0.02 0.06 16 45 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 47 H 0.16 0.92 7.77 -2.91 -0.02 0.90 16 48 H 0.19 -1.08 5.60 -2.91 -0.02 -1.09 16 49 H 0.14 -0.56 7.96 -2.39 -0.02 -0.58 16 50 H 0.39 -2.78 8.70 -74.06 -0.64 -3.42 16 51 H 0.15 0.21 7.86 -2.91 -0.02 0.19 16 Total: 0.00 -14.34 420.40 4.28 -10.07 By element: Atomic # 1 Polarization: -5.09 SS G_CDS: 1.03 Total: -4.06 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 7.16 Total: 8.48 kcal Atomic # 7 Polarization: -5.08 SS G_CDS: -2.04 Total: -7.12 kcal Atomic # 8 Polarization: -0.65 SS G_CDS: -3.09 Total: -3.74 kcal Atomic # 14 Polarization: -4.67 SS G_CDS: 2.38 Total: -2.29 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -1.16 Total: -1.34 kcal Total: -14.34 4.28 -10.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13019922_15493832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.587 kcal (2) G-P(sol) polarization free energy of solvation -14.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds