Wall clock time and date at job start Mon Mar 8 2021 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.46978 * 240.00462 * 2 1 3 5 5 Si 1.86299 * 109.47374 * 120.00118 * 2 1 3 6 6 C 1.86301 * 109.47106 * 300.00202 * 5 2 1 7 7 C 1.86295 * 109.47206 * 179.97438 * 5 2 1 8 8 O 1.63108 * 109.47052 * 60.00165 * 5 2 1 9 9 C 1.42899 * 113.99928 * 180.02562 * 8 5 2 10 10 C 1.50699 * 109.46785 * 179.97438 * 9 8 5 11 11 C 1.33136 * 122.55200 * 0.02562 * 10 9 8 12 12 S 1.75817 * 109.89121 * 180.02562 * 11 10 9 13 13 C 1.75852 * 91.13735 * 359.97438 * 12 11 10 14 14 C 1.34431 * 109.55925 * 359.73563 * 13 12 11 15 15 C 1.48569 * 122.74700 * 180.25551 * 14 13 12 16 16 C 1.34428 * 122.73899 * 129.93677 * 15 14 13 17 17 S 1.75858 * 109.55379 * 179.97438 * 16 15 14 18 18 C 1.75819 * 91.13648 * 0.28499 * 17 16 15 19 19 C 1.50703 * 125.05258 * 179.86185 * 18 17 16 20 20 O 1.42899 * 109.47335 * 119.97760 * 19 18 17 21 21 Si 1.86309 * 109.47022 * 359.97329 * 19 18 17 22 22 H 1.48497 * 109.46657 * 180.02562 * 21 19 18 23 23 H 1.48498 * 109.47226 * 299.99992 * 21 19 18 24 24 H 1.48497 * 109.46929 * 60.00541 * 21 19 18 25 25 C 1.33129 * 109.89400 * 359.83849 * 18 17 16 26 26 H 1.09000 * 109.47140 * 299.99612 * 1 2 3 27 27 H 1.09001 * 109.46922 * 59.99912 * 1 2 3 28 28 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47108 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47367 * 299.99815 * 3 2 1 31 31 H 1.09004 * 109.47368 * 60.00217 * 3 2 1 32 32 H 1.09002 * 109.46838 * 299.99316 * 4 2 1 33 33 H 1.08992 * 109.47513 * 60.00211 * 4 2 1 34 34 H 1.09004 * 109.47006 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46900 * 179.97438 * 6 5 2 36 36 H 1.09002 * 109.47148 * 299.99722 * 6 5 2 37 37 H 1.08996 * 109.46889 * 59.99853 * 6 5 2 38 38 H 1.09000 * 109.47314 * 300.00273 * 7 5 2 39 39 H 1.09002 * 109.47039 * 60.00283 * 7 5 2 40 40 H 1.09001 * 109.47207 * 180.02562 * 7 5 2 41 41 H 1.09005 * 109.47016 * 299.99548 * 9 8 5 42 42 H 1.08999 * 109.47156 * 59.99587 * 9 8 5 43 43 H 1.08004 * 125.05540 * 0.03278 * 11 10 9 44 44 H 1.08001 * 125.22076 * 179.97438 * 13 12 11 45 45 H 1.07996 * 125.22700 * 0.02562 * 16 15 14 46 46 H 1.09004 * 109.46745 * 239.98019 * 19 18 17 47 47 H 0.96703 * 114.00002 * 180.02562 * 20 19 18 48 48 H 1.07996 * 122.55155 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8789 1.5206 8 8 1.6074 -2.4161 1.5210 9 6 2.0287 -3.1815 2.6518 10 6 1.4713 -4.5778 2.5490 11 6 0.7093 -4.9718 1.5309 12 16 0.2450 -6.6537 1.7470 13 6 1.1387 -6.7426 3.2589 14 6 1.7195 -5.5563 3.5088 15 6 2.5534 -5.3076 4.7130 16 6 3.7775 -4.7559 4.6483 17 16 4.4487 -4.6211 6.2681 18 6 3.0052 -5.3441 6.9643 19 6 2.7868 -5.5981 8.4336 20 8 1.6346 -4.8775 8.8755 21 14 4.2803 -5.0288 9.3909 22 1 4.0653 -5.2796 10.8387 23 1 5.4776 -5.7776 8.9317 24 1 4.4885 -3.5759 9.1654 25 6 2.1335 -5.6334 6.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2496 35 1 1.8931 -0.5142 3.9322 36 1 1.8934 1.0276 3.0423 37 1 0.4401 -0.0001 3.0422 38 1 4.3770 -1.3929 0.6306 39 1 4.3777 0.1487 1.5205 40 1 4.3774 -1.3931 2.4104 41 1 3.1176 -3.2253 2.6757 42 1 1.6639 -2.7113 3.5651 43 1 0.4194 -4.3506 0.6962 44 1 1.2130 -7.6173 3.8880 45 1 4.2725 -4.4426 3.7410 46 1 2.6340 -6.6646 8.5992 47 1 1.4338 -4.9943 9.8143 48 1 1.1741 -6.0865 6.2016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13019922_15607708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:18:06 Heat of formation + Delta-G solvation = -67.925193 kcal Electronic energy + Delta-G solvation = -27069.288996 eV Core-core repulsion = 23465.684890 eV Total energy + Delta-G solvation = -3603.604106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 370.101 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.53813 -38.73038 -37.66109 -36.85948 -36.60216 -31.90850 -30.76699 -29.46037 -29.09719 -27.87291 -27.70705 -27.39264 -26.81440 -24.68498 -22.71582 -20.61212 -20.37025 -19.31155 -18.67314 -18.48412 -18.03091 -17.30632 -16.59176 -16.39685 -16.21471 -15.89448 -15.76376 -14.90237 -14.88712 -14.79814 -14.66053 -14.28445 -14.07098 -13.98413 -13.79014 -13.63779 -13.62725 -13.37882 -13.31734 -13.29294 -13.20358 -12.95461 -12.94186 -12.86345 -12.61159 -12.42406 -12.34975 -12.12405 -11.96030 -11.94450 -11.70538 -11.61222 -11.53952 -11.31613 -10.52345 -10.40940 -10.08760 -9.94755 -9.62692 -9.39075 -8.92773 -0.19523 0.19813 0.43823 0.72328 0.81845 1.05521 1.12219 1.34751 1.41072 1.42514 1.46326 1.73197 1.83600 2.02929 2.06227 2.42337 3.30834 3.70354 3.96206 4.04177 4.08384 4.10595 4.11046 4.28752 4.33700 4.36710 4.42819 4.45650 4.57075 4.66759 4.67029 4.72734 4.74122 4.77661 4.80132 4.84267 4.89983 4.98549 5.01976 5.08974 5.09389 5.14977 5.20554 5.30420 5.33680 5.40832 5.43647 5.46031 5.51163 5.53411 5.60051 5.73249 6.47152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.287 2.713 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.623 6.623 9 C 0.149 3.851 10 C -0.104 4.104 11 C -0.178 4.178 12 S 0.107 5.893 13 C -0.200 4.200 14 C -0.041 4.041 15 C -0.043 4.043 16 C -0.198 4.198 17 S 0.104 5.896 18 C -0.175 4.175 19 C -0.039 4.039 20 O -0.541 6.541 21 Si 0.889 3.111 22 H -0.230 1.230 23 H -0.232 1.232 24 H -0.231 1.231 25 C -0.088 4.088 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.176 0.824 44 H 0.167 0.833 45 H 0.169 0.831 46 H 0.086 0.914 47 H 0.383 0.617 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 -0.931 1.915 2.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.614 4.614 7 C -0.613 4.613 8 O -0.582 6.582 9 C 0.071 3.929 10 C -0.116 4.116 11 C -0.313 4.313 12 S 0.373 5.627 13 C -0.336 4.336 14 C -0.056 4.056 15 C -0.058 4.058 16 C -0.334 4.334 17 S 0.369 5.631 18 C -0.292 4.292 19 C -0.152 4.152 20 O -0.348 6.348 21 Si 0.708 3.292 22 H -0.153 1.153 23 H -0.155 1.155 24 H -0.153 1.153 25 C -0.118 4.118 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.194 0.806 44 H 0.185 0.815 45 H 0.187 0.813 46 H 0.103 0.897 47 H 0.230 0.770 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.883 -1.158 1.351 2.590 hybrid contribution -0.606 0.605 0.615 1.054 sum 1.276 -0.553 1.966 2.408 Atomic orbital electron populations 1.21511 0.93786 1.01999 1.01814 1.25765 1.00693 1.02622 1.12624 1.21557 1.00776 0.94906 1.02170 1.21511 1.00615 1.00205 0.96758 0.76709 0.63068 0.53333 0.65044 1.27037 1.07085 1.09455 1.17804 1.27034 1.25042 1.04792 1.04467 1.85289 1.79390 1.46026 1.47528 1.20527 0.97359 0.87980 0.87024 1.18676 1.01876 0.95890 0.95138 1.25364 1.04290 0.97719 1.03912 1.84427 1.50938 1.08953 1.18406 1.25652 1.04669 1.01575 1.01753 1.17104 1.00662 0.92884 0.94967 1.17383 0.93717 1.02286 0.92407 1.25813 0.98964 1.08025 1.00605 1.84365 1.18891 1.60777 0.99066 1.23506 0.98975 1.08801 0.97890 1.23958 0.98542 0.99140 0.93590 1.86523 1.45934 1.71672 1.30637 0.86344 0.77634 0.83418 0.81766 1.15290 1.15508 1.15317 1.20004 1.00480 1.01208 0.90139 0.92671 0.92798 0.92181 0.92519 0.92486 0.92493 0.92184 0.92799 0.92705 0.91383 0.90712 0.90816 0.90818 0.90646 0.91486 0.91570 0.91224 0.80628 0.81528 0.81336 0.89673 0.76954 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.02 7.85 37.16 0.29 0.27 16 2 C -0.37 0.09 0.53 -90.62 -0.05 0.05 16 3 C -0.14 0.07 7.85 37.16 0.29 0.36 16 4 C -0.13 0.00 7.85 37.16 0.29 0.29 16 5 Si 1.29 -1.02 8.45 -169.99 -1.44 -2.46 16 6 C -0.51 0.04 8.50 101.05 0.86 0.90 16 7 C -0.51 0.30 8.50 101.05 0.86 1.16 16 8 O -0.62 -0.34 7.42 -35.23 -0.26 -0.60 16 9 C 0.15 0.10 4.50 36.01 0.16 0.26 16 10 C -0.10 -0.18 5.80 -106.01 -0.62 -0.79 16 11 C -0.18 -0.27 10.42 28.96 0.30 0.03 16 12 S 0.11 0.09 23.33 -107.50 -2.51 -2.41 16 13 C -0.20 -0.20 10.92 29.39 0.32 0.12 16 14 C -0.04 -0.07 5.48 -106.59 -0.58 -0.65 16 15 C -0.04 -0.06 5.18 -106.59 -0.55 -0.61 16 16 C -0.20 -0.14 9.85 29.39 0.29 0.15 16 17 S 0.10 0.10 20.54 -107.50 -2.21 -2.11 16 18 C -0.18 -0.22 5.74 -36.09 -0.21 -0.42 16 19 C -0.04 0.02 2.95 36.01 0.11 0.13 16 20 O -0.54 0.09 12.83 -35.23 -0.45 -0.36 16 21 Si 0.89 -0.54 26.23 -169.99 -4.46 -4.99 16 22 H -0.23 0.25 7.11 56.52 0.40 0.65 16 23 H -0.23 0.01 7.11 56.52 0.40 0.41 16 24 H -0.23 -0.21 7.11 56.52 0.40 0.19 16 25 C -0.09 -0.13 9.72 -40.97 -0.40 -0.53 16 26 H 0.05 -0.02 7.79 -51.93 -0.40 -0.42 16 27 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.06 0.01 7.97 -51.93 -0.41 -0.40 16 29 H 0.06 -0.06 7.79 -51.93 -0.40 -0.47 16 30 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.06 -0.06 7.79 -51.93 -0.40 -0.46 16 32 H 0.06 0.00 7.97 -51.93 -0.41 -0.41 16 33 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 34 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 35 H 0.07 0.00 7.48 -51.93 -0.39 -0.39 16 36 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 37 H 0.07 0.02 7.79 -51.93 -0.40 -0.39 16 38 H 0.07 -0.03 7.79 -51.93 -0.40 -0.44 16 39 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 40 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 41 H 0.07 -0.05 5.51 -51.93 -0.29 -0.34 16 42 H 0.07 0.02 7.21 -51.93 -0.37 -0.36 16 43 H 0.18 0.14 7.48 -52.48 -0.39 -0.26 16 44 H 0.17 -0.10 8.06 -52.49 -0.42 -0.53 16 45 H 0.17 -0.17 6.88 -52.49 -0.36 -0.53 16 46 H 0.09 -0.22 7.96 -51.93 -0.41 -0.63 16 47 H 0.38 -1.80 8.74 45.56 0.40 -1.40 16 48 H 0.15 0.12 8.06 -52.49 -0.42 -0.31 16 LS Contribution 409.30 15.07 6.17 6.17 Total: 0.00 -4.59 409.30 -10.97 -15.55 By element: Atomic # 1 Polarization: -2.32 SS G_CDS: -7.18 Total: -9.50 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 1.37 Total: 0.71 kcal Atomic # 8 Polarization: -0.25 SS G_CDS: -0.71 Total: -0.96 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: -5.90 Total: -7.45 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -4.72 Total: -4.52 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -4.59 -10.97 -15.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13019922_15607708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.370 kcal (2) G-P(sol) polarization free energy of solvation -4.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds