Wall clock time and date at job start Mon Mar 8 2021 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.46978 * 240.00462 * 2 1 3 5 5 Si 1.86299 * 109.47374 * 120.00118 * 2 1 3 6 6 C 1.86301 * 109.47106 * 300.00202 * 5 2 1 7 7 C 1.86295 * 109.47206 * 179.97438 * 5 2 1 8 8 O 1.63108 * 109.47052 * 60.00165 * 5 2 1 9 9 C 1.42899 * 113.99928 * 180.02562 * 8 5 2 10 10 C 1.50699 * 109.46785 * 179.97438 * 9 8 5 11 11 C 1.33136 * 122.55200 * 0.02562 * 10 9 8 12 12 S 1.75817 * 109.89121 * 180.02562 * 11 10 9 13 13 C 1.75852 * 91.13735 * 359.97438 * 12 11 10 14 14 C 1.34431 * 109.55925 * 359.73563 * 13 12 11 15 15 C 1.48569 * 122.74700 * 180.25551 * 14 13 12 16 16 C 1.34428 * 122.73899 * 129.93677 * 15 14 13 17 17 S 1.75858 * 109.55379 * 179.97438 * 16 15 14 18 18 C 1.75819 * 91.13648 * 0.28499 * 17 16 15 19 19 C 1.50703 * 125.05258 * 179.86185 * 18 17 16 20 20 O 1.42899 * 109.47335 * 119.97760 * 19 18 17 21 21 Si 1.86309 * 109.47022 * 359.97329 * 19 18 17 22 22 H 1.48497 * 109.46657 * 180.02562 * 21 19 18 23 23 H 1.48498 * 109.47226 * 299.99992 * 21 19 18 24 24 H 1.48497 * 109.46929 * 60.00541 * 21 19 18 25 25 C 1.33129 * 109.89400 * 359.83849 * 18 17 16 26 26 H 1.09000 * 109.47140 * 299.99612 * 1 2 3 27 27 H 1.09001 * 109.46922 * 59.99912 * 1 2 3 28 28 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47108 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47367 * 299.99815 * 3 2 1 31 31 H 1.09004 * 109.47368 * 60.00217 * 3 2 1 32 32 H 1.09002 * 109.46838 * 299.99316 * 4 2 1 33 33 H 1.08992 * 109.47513 * 60.00211 * 4 2 1 34 34 H 1.09004 * 109.47006 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46900 * 179.97438 * 6 5 2 36 36 H 1.09002 * 109.47148 * 299.99722 * 6 5 2 37 37 H 1.08996 * 109.46889 * 59.99853 * 6 5 2 38 38 H 1.09000 * 109.47314 * 300.00273 * 7 5 2 39 39 H 1.09002 * 109.47039 * 60.00283 * 7 5 2 40 40 H 1.09001 * 109.47207 * 180.02562 * 7 5 2 41 41 H 1.09005 * 109.47016 * 299.99548 * 9 8 5 42 42 H 1.08999 * 109.47156 * 59.99587 * 9 8 5 43 43 H 1.08004 * 125.05540 * 0.03278 * 11 10 9 44 44 H 1.08001 * 125.22076 * 179.97438 * 13 12 11 45 45 H 1.07996 * 125.22700 * 0.02562 * 16 15 14 46 46 H 1.09004 * 109.46745 * 239.98019 * 19 18 17 47 47 H 0.96703 * 114.00002 * 180.02562 * 20 19 18 48 48 H 1.07996 * 122.55155 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8789 1.5206 8 8 1.6074 -2.4161 1.5210 9 6 2.0287 -3.1815 2.6518 10 6 1.4713 -4.5778 2.5490 11 6 0.7093 -4.9718 1.5309 12 16 0.2450 -6.6537 1.7470 13 6 1.1387 -6.7426 3.2589 14 6 1.7195 -5.5563 3.5088 15 6 2.5534 -5.3076 4.7130 16 6 3.7775 -4.7559 4.6483 17 16 4.4487 -4.6211 6.2681 18 6 3.0052 -5.3441 6.9643 19 6 2.7868 -5.5981 8.4336 20 8 1.6346 -4.8775 8.8755 21 14 4.2803 -5.0288 9.3909 22 1 4.0653 -5.2796 10.8387 23 1 5.4776 -5.7776 8.9317 24 1 4.4885 -3.5759 9.1654 25 6 2.1335 -5.6334 6.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2496 35 1 1.8931 -0.5142 3.9322 36 1 1.8934 1.0276 3.0423 37 1 0.4401 -0.0001 3.0422 38 1 4.3770 -1.3929 0.6306 39 1 4.3777 0.1487 1.5205 40 1 4.3774 -1.3931 2.4104 41 1 3.1176 -3.2253 2.6757 42 1 1.6639 -2.7113 3.5651 43 1 0.4194 -4.3506 0.6962 44 1 1.2130 -7.6173 3.8880 45 1 4.2725 -4.4426 3.7410 46 1 2.6340 -6.6646 8.5992 47 1 1.4338 -4.9943 9.8143 48 1 1.1741 -6.0865 6.2016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13019922_15607708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:18:05 Heat of formation + Delta-G solvation = -57.328715 kcal Electronic energy + Delta-G solvation = -27068.829499 eV Core-core repulsion = 23465.684890 eV Total energy + Delta-G solvation = -3603.144608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 370.101 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.57805 -38.72215 -37.62879 -36.83846 -36.61752 -31.92127 -30.80344 -29.42355 -29.06997 -27.83864 -27.72806 -27.38023 -26.81274 -24.71480 -22.74281 -20.63208 -20.36642 -19.34225 -18.67183 -18.45389 -18.05306 -17.31027 -16.60355 -16.39404 -16.21523 -15.87824 -15.76100 -14.87448 -14.85925 -14.77851 -14.66045 -14.31676 -14.06924 -13.97365 -13.80004 -13.64076 -13.62598 -13.36138 -13.34517 -13.29953 -13.18403 -12.94973 -12.93586 -12.86673 -12.61461 -12.39814 -12.31943 -12.11179 -11.97154 -11.93823 -11.69565 -11.59706 -11.55992 -11.32523 -10.46244 -10.38856 -10.06596 -9.98407 -9.66776 -9.44988 -8.98382 -0.23671 0.13509 0.41625 0.69141 0.78754 1.05125 1.10147 1.32668 1.44862 1.45820 1.47833 1.78052 1.87911 1.98561 2.10464 2.45606 3.42511 3.76732 3.94573 4.02778 4.08014 4.12619 4.12917 4.28934 4.34879 4.40254 4.45742 4.46986 4.56977 4.67687 4.72284 4.75307 4.76830 4.77599 4.82800 4.83971 4.86837 4.98800 5.00694 5.09784 5.10231 5.11694 5.21478 5.28473 5.35813 5.38887 5.41593 5.45745 5.46609 5.57721 5.63207 5.69305 6.78513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.378 4.378 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.315 2.685 6 C -0.521 4.521 7 C -0.517 4.517 8 O -0.632 6.632 9 C 0.143 3.857 10 C -0.112 4.112 11 C -0.190 4.190 12 S 0.112 5.888 13 C -0.203 4.203 14 C -0.051 4.051 15 C -0.050 4.050 16 C -0.197 4.197 17 S 0.093 5.907 18 C -0.184 4.184 19 C -0.038 4.038 20 O -0.559 6.559 21 Si 0.910 3.090 22 H -0.220 1.220 23 H -0.242 1.242 24 H -0.257 1.257 25 C -0.096 4.096 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.179 0.821 44 H 0.180 0.820 45 H 0.183 0.817 46 H 0.108 0.892 47 H 0.401 0.599 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 -1.259 2.407 2.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.421 4.421 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.445 2.555 6 C -0.622 4.622 7 C -0.619 4.619 8 O -0.591 6.591 9 C 0.066 3.934 10 C -0.124 4.124 11 C -0.325 4.325 12 S 0.378 5.622 13 C -0.339 4.339 14 C -0.066 4.066 15 C -0.065 4.065 16 C -0.332 4.332 17 S 0.358 5.642 18 C -0.301 4.301 19 C -0.151 4.151 20 O -0.369 6.369 21 Si 0.731 3.269 22 H -0.142 1.142 23 H -0.166 1.166 24 H -0.181 1.181 25 C -0.127 4.127 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.196 0.804 44 H 0.198 0.802 45 H 0.200 0.800 46 H 0.125 0.875 47 H 0.252 0.748 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.087 -1.490 1.863 3.170 hybrid contribution -0.688 0.725 0.468 1.104 sum 1.399 -0.765 2.331 2.824 Atomic orbital electron populations 1.21546 0.94264 1.01841 1.01796 1.25849 1.00359 1.02951 1.12918 1.21610 1.01335 0.94700 1.02220 1.21543 1.01044 1.00067 0.96731 0.76223 0.62746 0.52485 0.64041 1.27148 1.06844 1.09940 1.18276 1.27078 1.25020 1.05165 1.04674 1.85280 1.79708 1.46557 1.47570 1.20632 0.98150 0.87579 0.87082 1.18863 1.01921 0.96455 0.95177 1.25482 1.04627 0.98179 1.04191 1.84366 1.50836 1.08602 1.18396 1.25879 1.04232 1.01927 1.01832 1.17196 1.01092 0.93131 0.95162 1.17444 0.93985 1.02700 0.92391 1.25982 0.98793 1.07588 1.00886 1.84394 1.19284 1.60974 0.99540 1.23789 0.98803 1.08541 0.98935 1.23991 0.98341 1.00354 0.92385 1.86474 1.45920 1.71989 1.32497 0.86068 0.77232 0.81341 0.82282 1.14159 1.16566 1.18115 1.20102 1.00738 1.01564 0.90270 0.92317 0.93214 0.92419 0.91745 0.92997 0.91942 0.92379 0.93264 0.92081 0.91472 0.90267 0.91293 0.90858 0.90229 0.91060 0.90238 0.91104 0.80378 0.80222 0.79985 0.87451 0.74807 0.83340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.11 7.85 71.98 0.56 0.45 16 2 C -0.38 0.12 0.53 -10.80 -0.01 0.11 16 3 C -0.14 0.14 7.85 71.98 0.56 0.71 16 4 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 5 Si 1.31 -2.13 8.45 68.60 0.58 -1.55 16 6 C -0.52 0.03 8.50 113.37 0.96 1.00 16 7 C -0.52 0.87 8.50 113.37 0.96 1.83 16 8 O -0.63 -0.80 7.42 -148.98 -1.11 -1.90 16 9 C 0.14 0.20 4.50 71.24 0.32 0.52 16 10 C -0.11 -0.41 5.80 -20.76 -0.12 -0.53 16 11 C -0.19 -0.65 10.42 66.67 0.69 0.04 16 12 S 0.11 0.22 23.33 -56.49 -1.32 -1.10 16 13 C -0.20 -0.40 10.92 66.95 0.73 0.33 16 14 C -0.05 -0.17 5.48 -21.14 -0.12 -0.29 16 15 C -0.05 -0.15 5.18 -21.14 -0.11 -0.26 16 16 C -0.20 -0.27 9.85 66.95 0.66 0.39 16 17 S 0.09 0.21 20.54 -56.49 -1.16 -0.95 16 18 C -0.18 -0.45 5.74 24.54 0.14 -0.31 16 19 C -0.04 0.06 2.95 71.24 0.21 0.27 16 20 O -0.56 0.50 12.83 -148.98 -1.91 -1.41 16 21 Si 0.91 -1.16 26.23 68.60 1.80 0.64 16 22 H -0.22 0.69 7.11 99.48 0.71 1.40 16 23 H -0.24 -0.04 7.11 99.48 0.71 0.67 16 24 H -0.26 -0.75 7.11 99.48 0.71 -0.04 16 25 C -0.10 -0.29 9.72 21.37 0.21 -0.08 16 26 H 0.06 -0.01 7.79 -2.39 -0.02 -0.03 16 27 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.06 0.07 7.97 -2.39 -0.02 0.05 16 29 H 0.06 -0.17 7.79 -2.38 -0.02 -0.19 16 30 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 32 H 0.06 0.03 7.97 -2.39 -0.02 0.02 16 33 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.06 -0.07 7.79 -2.38 -0.02 -0.09 16 35 H 0.07 0.01 7.48 -2.39 -0.02 -0.01 16 36 H 0.08 -0.09 7.79 -2.39 -0.02 -0.11 16 37 H 0.07 0.06 7.79 -2.39 -0.02 0.04 16 38 H 0.07 -0.10 7.79 -2.39 -0.02 -0.12 16 39 H 0.08 -0.19 7.79 -2.39 -0.02 -0.21 16 40 H 0.07 -0.17 7.48 -2.39 -0.02 -0.19 16 41 H 0.08 -0.15 5.51 -2.38 -0.01 -0.16 16 42 H 0.07 0.06 7.21 -2.39 -0.02 0.04 16 43 H 0.18 0.40 7.48 -2.91 -0.02 0.37 16 44 H 0.18 -0.27 8.06 -2.91 -0.02 -0.30 16 45 H 0.18 -0.42 6.88 -2.91 -0.02 -0.44 16 46 H 0.11 -0.68 7.96 -2.39 -0.02 -0.69 16 47 H 0.40 -4.10 8.74 -74.06 -0.65 -4.75 16 48 H 0.15 0.25 8.06 -2.91 -0.02 0.22 16 Total: 0.00 -10.34 409.30 4.17 -6.16 By element: Atomic # 1 Polarization: -5.65 SS G_CDS: 1.05 Total: -4.59 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 6.23 Total: 4.71 kcal Atomic # 8 Polarization: -0.30 SS G_CDS: -3.02 Total: -3.32 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: 2.38 Total: -0.91 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.48 Total: -2.05 kcal Total: -10.34 4.17 -6.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13019922_15607708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.164 kcal (2) G-P(sol) polarization free energy of solvation -10.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds