Wall clock time and date at job start Mon Mar 8 2021 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.46978 * 240.00462 * 2 1 3 5 5 Si 1.86299 * 109.47374 * 120.00118 * 2 1 3 6 6 C 1.86301 * 109.47106 * 300.00202 * 5 2 1 7 7 C 1.86295 * 109.47206 * 179.97438 * 5 2 1 8 8 O 1.63108 * 109.47052 * 60.00165 * 5 2 1 9 9 C 1.42899 * 113.99928 * 180.02562 * 8 5 2 10 10 C 1.50699 * 109.46785 * 179.97438 * 9 8 5 11 11 C 1.33054 * 122.54424 * 359.70898 * 10 9 8 12 12 S 1.75812 * 109.93016 * 179.90583 * 11 10 9 13 13 C 1.75851 * 91.15248 * 0.30129 * 12 11 10 14 14 C 1.34571 * 109.54203 * 359.83111 * 13 12 11 15 15 C 1.48368 * 122.77478 * 179.97438 * 14 13 12 16 16 C 1.39737 * 120.53715 * 310.02620 * 15 14 13 17 17 C 1.38455 * 118.31242 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.35756 * 179.97438 * 17 16 15 19 19 O 1.42895 * 109.46891 * 65.00592 * 18 17 16 20 20 Si 1.86296 * 109.47005 * 185.00542 * 18 17 16 21 21 H 1.48500 * 109.47349 * 299.99925 * 20 18 17 22 22 H 1.48497 * 109.47358 * 59.99988 * 20 18 17 23 23 H 1.48503 * 109.46769 * 180.02562 * 20 18 17 24 24 C 1.38277 * 119.28549 * 0.02562 * 17 16 15 25 25 N 1.31915 * 121.03346 * 359.97438 * 24 17 16 26 26 C 1.31714 * 121.85429 * 359.72330 * 25 24 17 27 27 H 1.09000 * 109.47140 * 299.99612 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99912 * 1 2 3 29 29 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47108 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47367 * 299.99815 * 3 2 1 32 32 H 1.09004 * 109.47368 * 60.00217 * 3 2 1 33 33 H 1.09002 * 109.46838 * 299.99316 * 4 2 1 34 34 H 1.08992 * 109.47513 * 60.00211 * 4 2 1 35 35 H 1.09004 * 109.47006 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46900 * 179.97438 * 6 5 2 37 37 H 1.09002 * 109.47148 * 299.99722 * 6 5 2 38 38 H 1.08996 * 109.46889 * 59.99853 * 6 5 2 39 39 H 1.09000 * 109.47314 * 300.00273 * 7 5 2 40 40 H 1.09002 * 109.47039 * 60.00283 * 7 5 2 41 41 H 1.09001 * 109.47207 * 180.02562 * 7 5 2 42 42 H 1.09005 * 109.47016 * 299.99548 * 9 8 5 43 43 H 1.08999 * 109.47156 * 59.99587 * 9 8 5 44 44 H 1.08002 * 125.03687 * 0.02562 * 11 10 9 45 45 H 1.07999 * 125.23387 * 179.85376 * 13 12 11 46 46 H 1.08000 * 120.84512 * 359.97438 * 16 15 14 47 47 H 1.09002 * 109.47212 * 305.00526 * 18 17 16 48 48 H 0.96698 * 113.99876 * 180.02562 * 19 18 17 49 49 H 1.07999 * 119.47982 * 180.02562 * 24 17 16 50 50 H 1.08007 * 119.70312 * 180.27174 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8789 1.5206 8 8 1.6074 -2.4161 1.5210 9 6 2.0287 -3.1815 2.6518 10 6 1.4713 -4.5778 2.5490 11 6 0.7047 -4.9696 1.5345 12 16 0.2442 -6.6530 1.7466 13 6 1.1381 -6.7440 3.2583 14 6 1.7151 -5.5551 3.5123 15 6 2.5420 -5.3051 4.7185 16 6 2.0683 -5.6480 5.9877 17 6 2.8784 -5.3946 7.0815 18 6 2.4131 -5.7453 8.4713 19 8 2.2762 -7.1632 8.5841 20 14 3.6617 -5.1412 9.7150 21 1 4.9730 -5.7875 9.4542 22 1 3.8041 -3.6677 9.5978 23 1 3.2035 -5.4874 11.0845 24 6 4.1185 -4.8154 6.8851 25 7 4.5389 -4.5025 5.6745 26 6 3.8062 -4.7298 4.6038 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 1.8931 -0.5142 3.9322 37 1 1.8934 1.0276 3.0423 38 1 0.4401 -0.0001 3.0422 39 1 4.3770 -1.3929 0.6306 40 1 4.3777 0.1487 1.5205 41 1 4.3774 -1.3931 2.4104 42 1 3.1176 -3.2253 2.6757 43 1 1.6639 -2.7113 3.5651 44 1 0.4105 -4.3464 0.7029 45 1 1.2128 -7.6195 3.8862 46 1 1.0949 -6.0991 6.1122 47 1 1.4506 -5.2709 8.6628 48 1 1.9788 -7.4616 9.4545 49 1 4.7531 -4.6167 7.7360 50 1 4.1865 -4.4636 3.6286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13142264_15607708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:36:01 Heat of formation + Delta-G solvation = -63.437119 kcal Electronic energy + Delta-G solvation = -28767.572164 eV Core-core repulsion = 25009.584518 eV Total energy + Delta-G solvation = -3757.987646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.60504 -39.65495 -37.91674 -37.32355 -36.86708 -33.81096 -33.09023 -30.56881 -29.46847 -29.11269 -27.88679 -27.81199 -27.40833 -27.13644 -25.22664 -23.52337 -22.47053 -20.46187 -19.47335 -18.93857 -18.67731 -18.28766 -17.64976 -17.30684 -16.76910 -16.32772 -15.95292 -15.85443 -15.72627 -15.10250 -14.90013 -14.88594 -14.71870 -14.56272 -14.18574 -14.11030 -13.97152 -13.90688 -13.68262 -13.54007 -13.40859 -13.37170 -13.25110 -13.11918 -12.95962 -12.94898 -12.46336 -12.42318 -12.17986 -12.08166 -11.98075 -11.90744 -11.70511 -11.63293 -11.37388 -10.94313 -10.63604 -10.50128 -10.43560 -10.17312 -10.10559 -9.56782 -9.13688 -0.30854 0.09338 0.28097 0.69016 1.00405 1.03588 1.33360 1.37492 1.40875 1.60403 1.70730 1.80773 2.02243 2.39615 2.64776 3.15557 3.36985 3.61442 3.71026 3.85704 3.91644 3.94259 4.06682 4.08947 4.09405 4.19167 4.27348 4.32218 4.43648 4.47218 4.55256 4.61862 4.66352 4.70709 4.71674 4.72462 4.78816 4.82625 4.82823 4.97020 5.00272 5.04577 5.07384 5.07968 5.17283 5.23546 5.31879 5.36223 5.39332 5.43565 5.51032 5.53488 5.58513 5.65251 6.43506 6.86645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.287 2.713 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.622 6.622 9 C 0.146 3.854 10 C -0.105 4.105 11 C -0.176 4.176 12 S 0.115 5.885 13 C -0.198 4.198 14 C -0.061 4.061 15 C -0.076 4.076 16 C -0.032 4.032 17 C -0.123 4.123 18 C -0.077 4.077 19 O -0.544 6.544 20 Si 0.938 3.062 21 H -0.243 1.243 22 H -0.245 1.245 23 H -0.251 1.251 24 C 0.097 3.903 25 N -0.470 5.470 26 C 0.111 3.889 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.178 0.822 45 H 0.168 0.832 46 H 0.141 0.859 47 H 0.080 0.920 48 H 0.383 0.617 49 H 0.152 0.848 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.929 0.282 1.944 2.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.419 2.581 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.581 6.581 9 C 0.069 3.931 10 C -0.116 4.116 11 C -0.311 4.311 12 S 0.382 5.618 13 C -0.334 4.334 14 C -0.075 4.075 15 C -0.081 4.081 16 C -0.058 4.058 17 C -0.125 4.125 18 C -0.188 4.188 19 O -0.350 6.350 20 Si 0.760 3.240 21 H -0.166 1.166 22 H -0.169 1.169 23 H -0.175 1.175 24 C -0.059 4.059 25 N -0.177 5.177 26 C -0.047 4.047 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.195 0.805 45 H 0.186 0.814 46 H 0.159 0.841 47 H 0.098 0.902 48 H 0.231 0.769 49 H 0.169 0.831 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.361 -0.261 0.796 1.598 hybrid contribution -0.317 0.813 1.274 1.544 sum -1.677 0.552 2.070 2.721 Atomic orbital electron populations 1.21512 0.93814 1.01966 1.01811 1.25765 1.00657 1.02645 1.12628 1.21557 1.00826 0.94878 1.02161 1.21512 1.00673 1.00183 0.96737 0.76704 0.63151 0.53219 0.65021 1.27038 1.07011 1.09536 1.17779 1.27034 1.24874 1.04859 1.04628 1.85292 1.79409 1.46055 1.47375 1.20568 0.97544 0.87921 0.87115 1.18658 1.01939 0.95889 0.95130 1.25377 1.04016 0.97765 1.03953 1.84478 1.50474 1.08636 1.18198 1.25762 1.04363 1.01453 1.01780 1.17291 1.01499 0.93199 0.95476 1.19475 0.95305 1.00891 0.92411 1.21525 0.99702 0.94335 0.90265 1.20240 0.95808 1.01348 0.95140 1.24623 1.07661 0.86580 0.99983 1.86497 1.91027 1.19091 1.38406 0.85836 0.79467 0.81036 0.77662 1.16647 1.16850 1.17491 1.22664 0.92834 0.95073 0.95366 1.67709 1.34715 1.16736 0.98530 1.23035 0.89819 0.94188 0.97651 0.92702 0.92786 0.92202 0.92472 0.92477 0.92514 0.92185 0.92794 0.92649 0.91495 0.90651 0.90859 0.90765 0.90643 0.91323 0.91313 0.91400 0.80473 0.81421 0.84098 0.90162 0.76914 0.83091 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.03 7.85 37.16 0.29 0.32 16 2 C -0.37 0.21 0.53 -90.62 -0.05 0.16 16 3 C -0.14 0.10 7.85 37.16 0.29 0.39 16 4 C -0.13 0.03 7.85 37.16 0.29 0.33 16 5 Si 1.29 -1.48 8.45 -169.99 -1.44 -2.91 16 6 C -0.51 0.27 8.50 101.05 0.86 1.13 16 7 C -0.51 0.32 8.50 101.05 0.86 1.18 16 8 O -0.62 0.02 7.42 -35.23 -0.26 -0.24 16 9 C 0.15 -0.01 4.47 36.01 0.16 0.15 16 10 C -0.10 -0.09 5.79 -106.00 -0.61 -0.71 16 11 C -0.18 -0.13 10.41 28.93 0.30 0.17 16 12 S 0.12 0.03 23.32 -107.50 -2.51 -2.48 16 13 C -0.20 -0.08 10.86 29.44 0.32 0.24 16 14 C -0.06 -0.06 5.38 -106.60 -0.57 -0.63 16 15 C -0.08 -0.08 5.31 -104.75 -0.56 -0.64 16 16 C -0.03 -0.03 9.42 -38.94 -0.37 -0.39 16 17 C -0.12 -0.11 5.39 -104.53 -0.56 -0.67 16 18 C -0.08 0.10 2.81 36.01 0.10 0.20 16 19 O -0.54 0.47 12.82 -35.23 -0.45 0.02 16 20 Si 0.94 -1.33 25.16 -169.99 -4.28 -5.61 16 21 H -0.24 -0.01 7.04 56.52 0.40 0.39 16 22 H -0.25 0.20 7.11 56.52 0.40 0.60 16 23 H -0.25 0.34 7.11 56.52 0.40 0.74 16 24 C 0.10 0.17 9.84 -17.50 -0.17 0.00 16 25 N -0.47 -1.34 10.35 -12.96 -0.13 -1.48 16 26 C 0.11 0.17 9.77 -17.18 -0.17 0.00 16 27 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 28 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.06 -0.01 7.97 -51.93 -0.41 -0.43 16 30 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 31 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 33 H 0.06 -0.01 7.97 -51.93 -0.41 -0.43 16 34 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 36 H 0.07 -0.03 7.48 -51.93 -0.39 -0.42 16 37 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 38 H 0.07 -0.02 7.79 -51.93 -0.40 -0.43 16 39 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 40 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 41 H 0.07 -0.05 7.48 -51.93 -0.39 -0.44 16 42 H 0.07 -0.08 5.24 -51.93 -0.27 -0.36 16 43 H 0.07 -0.05 7.21 -51.93 -0.37 -0.42 16 44 H 0.18 0.01 7.48 -52.49 -0.39 -0.39 16 45 H 0.17 -0.14 8.06 -52.49 -0.42 -0.57 16 46 H 0.14 -0.07 8.06 -52.49 -0.42 -0.49 16 47 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 48 H 0.38 -2.00 8.74 45.56 0.40 -1.60 16 49 H 0.15 0.05 4.87 -52.49 -0.26 -0.21 16 50 H 0.16 -0.04 6.56 -52.48 -0.34 -0.39 16 LS Contribution 411.13 15.07 6.20 6.20 Total: 0.00 -5.39 411.13 -9.87 -15.25 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: -7.41 Total: -9.99 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 0.41 Total: 1.24 kcal Atomic # 7 Polarization: -1.34 SS G_CDS: -0.13 Total: -1.48 kcal Atomic # 8 Polarization: 0.49 SS G_CDS: -0.71 Total: -0.22 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: -5.71 Total: -8.52 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.51 Total: -2.48 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -5.39 -9.87 -15.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13142264_15607708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.183 kcal (2) G-P(sol) polarization free energy of solvation -5.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds