Wall clock time and date at job start Mon Mar 8 2021 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.46978 * 240.00462 * 2 1 3 5 5 Si 1.86299 * 109.47374 * 120.00118 * 2 1 3 6 6 C 1.86301 * 109.47106 * 300.00202 * 5 2 1 7 7 C 1.86295 * 109.47206 * 179.97438 * 5 2 1 8 8 O 1.63108 * 109.47052 * 60.00165 * 5 2 1 9 9 C 1.42899 * 113.99928 * 180.02562 * 8 5 2 10 10 C 1.50699 * 109.46785 * 179.97438 * 9 8 5 11 11 C 1.33054 * 122.54424 * 359.70898 * 10 9 8 12 12 S 1.75812 * 109.93016 * 179.90583 * 11 10 9 13 13 C 1.75851 * 91.15248 * 0.30129 * 12 11 10 14 14 C 1.34571 * 109.54203 * 359.83111 * 13 12 11 15 15 C 1.48368 * 122.77478 * 179.97438 * 14 13 12 16 16 C 1.39737 * 120.53715 * 310.02620 * 15 14 13 17 17 C 1.38455 * 118.31242 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.35756 * 179.97438 * 17 16 15 19 19 O 1.42895 * 109.46891 * 65.00592 * 18 17 16 20 20 Si 1.86296 * 109.47005 * 185.00542 * 18 17 16 21 21 H 1.48500 * 109.47349 * 299.99925 * 20 18 17 22 22 H 1.48497 * 109.47358 * 59.99988 * 20 18 17 23 23 H 1.48503 * 109.46769 * 180.02562 * 20 18 17 24 24 C 1.38277 * 119.28549 * 0.02562 * 17 16 15 25 25 N 1.31915 * 121.03346 * 359.97438 * 24 17 16 26 26 C 1.31714 * 121.85429 * 359.72330 * 25 24 17 27 27 H 1.09000 * 109.47140 * 299.99612 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99912 * 1 2 3 29 29 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47108 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47367 * 299.99815 * 3 2 1 32 32 H 1.09004 * 109.47368 * 60.00217 * 3 2 1 33 33 H 1.09002 * 109.46838 * 299.99316 * 4 2 1 34 34 H 1.08992 * 109.47513 * 60.00211 * 4 2 1 35 35 H 1.09004 * 109.47006 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46900 * 179.97438 * 6 5 2 37 37 H 1.09002 * 109.47148 * 299.99722 * 6 5 2 38 38 H 1.08996 * 109.46889 * 59.99853 * 6 5 2 39 39 H 1.09000 * 109.47314 * 300.00273 * 7 5 2 40 40 H 1.09002 * 109.47039 * 60.00283 * 7 5 2 41 41 H 1.09001 * 109.47207 * 180.02562 * 7 5 2 42 42 H 1.09005 * 109.47016 * 299.99548 * 9 8 5 43 43 H 1.08999 * 109.47156 * 59.99587 * 9 8 5 44 44 H 1.08002 * 125.03687 * 0.02562 * 11 10 9 45 45 H 1.07999 * 125.23387 * 179.85376 * 13 12 11 46 46 H 1.08000 * 120.84512 * 359.97438 * 16 15 14 47 47 H 1.09002 * 109.47212 * 305.00526 * 18 17 16 48 48 H 0.96698 * 113.99876 * 180.02562 * 19 18 17 49 49 H 1.07999 * 119.47982 * 180.02562 * 24 17 16 50 50 H 1.08007 * 119.70312 * 180.27174 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8789 1.5206 8 8 1.6074 -2.4161 1.5210 9 6 2.0287 -3.1815 2.6518 10 6 1.4713 -4.5778 2.5490 11 6 0.7047 -4.9696 1.5345 12 16 0.2442 -6.6530 1.7466 13 6 1.1381 -6.7440 3.2583 14 6 1.7151 -5.5551 3.5123 15 6 2.5420 -5.3051 4.7185 16 6 2.0683 -5.6480 5.9877 17 6 2.8784 -5.3946 7.0815 18 6 2.4131 -5.7453 8.4713 19 8 2.2762 -7.1632 8.5841 20 14 3.6617 -5.1412 9.7150 21 1 4.9730 -5.7875 9.4542 22 1 3.8041 -3.6677 9.5978 23 1 3.2035 -5.4874 11.0845 24 6 4.1185 -4.8154 6.8851 25 7 4.5389 -4.5025 5.6745 26 6 3.8062 -4.7298 4.6038 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 1.8931 -0.5142 3.9322 37 1 1.8934 1.0276 3.0423 38 1 0.4401 -0.0001 3.0422 39 1 4.3770 -1.3929 0.6306 40 1 4.3777 0.1487 1.5205 41 1 4.3774 -1.3931 2.4104 42 1 3.1176 -3.2253 2.6757 43 1 1.6639 -2.7113 3.5651 44 1 0.4105 -4.3464 0.7029 45 1 1.2128 -7.6195 3.8862 46 1 1.0949 -6.0991 6.1122 47 1 1.4506 -5.2709 8.6628 48 1 1.9788 -7.4616 9.4545 49 1 4.7531 -4.6167 7.7360 50 1 4.1865 -4.4636 3.6286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13142264_15607708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:36:00 Heat of formation + Delta-G solvation = -54.911392 kcal Electronic energy + Delta-G solvation = -28767.202461 eV Core-core repulsion = 25009.584518 eV Total energy + Delta-G solvation = -3757.617943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.63944 -39.65270 -37.81041 -37.30311 -36.82199 -33.83784 -33.10727 -30.57083 -29.41237 -29.06281 -27.83257 -27.79601 -27.37180 -27.10034 -25.25022 -23.53853 -22.47112 -20.42139 -19.47701 -18.93750 -18.55568 -18.30621 -17.65386 -17.27687 -16.75594 -16.29214 -15.90844 -15.80604 -15.66984 -15.09924 -14.88530 -14.84967 -14.69565 -14.49375 -14.20592 -14.09023 -13.94017 -13.89955 -13.66183 -13.51342 -13.36621 -13.34718 -13.19268 -13.08084 -12.94035 -12.90710 -12.41745 -12.37701 -12.10096 -12.03364 -11.93153 -11.88204 -11.67008 -11.58656 -11.34160 -10.98395 -10.68157 -10.45033 -10.38970 -10.14801 -10.06095 -9.58361 -9.15022 -0.34890 0.06567 0.24036 0.68603 1.01669 1.13096 1.44645 1.45216 1.50564 1.58075 1.78350 1.90601 2.10350 2.45431 2.61196 3.19943 3.42936 3.61815 3.72932 3.84764 3.94346 3.98082 4.09597 4.13408 4.13666 4.29304 4.30570 4.36103 4.47136 4.49205 4.59808 4.64669 4.72323 4.73425 4.77207 4.78400 4.83351 4.83687 4.84914 5.00058 5.01597 5.02907 5.10620 5.11264 5.19065 5.25551 5.34525 5.36675 5.42585 5.46470 5.50257 5.58092 5.64158 5.66196 6.77815 6.81857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.378 4.378 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.318 2.682 6 C -0.520 4.520 7 C -0.520 4.520 8 O -0.630 6.630 9 C 0.140 3.860 10 C -0.111 4.111 11 C -0.186 4.186 12 S 0.122 5.878 13 C -0.200 4.200 14 C -0.068 4.068 15 C -0.076 4.076 16 C -0.036 4.036 17 C -0.128 4.128 18 C -0.073 4.073 19 O -0.561 6.561 20 Si 0.966 3.034 21 H -0.269 1.269 22 H -0.256 1.256 23 H -0.248 1.248 24 C 0.081 3.919 25 N -0.493 5.493 26 C 0.103 3.897 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.181 0.819 45 H 0.179 0.821 46 H 0.154 0.846 47 H 0.104 0.896 48 H 0.401 0.599 49 H 0.158 0.842 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.481 0.061 2.471 3.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.421 4.421 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.448 2.552 6 C -0.621 4.621 7 C -0.622 4.622 8 O -0.589 6.589 9 C 0.062 3.938 10 C -0.122 4.122 11 C -0.322 4.322 12 S 0.389 5.611 13 C -0.336 4.336 14 C -0.081 4.081 15 C -0.080 4.080 16 C -0.062 4.062 17 C -0.130 4.130 18 C -0.184 4.184 19 O -0.370 6.370 20 Si 0.790 3.210 21 H -0.194 1.194 22 H -0.180 1.180 23 H -0.171 1.171 24 C -0.075 4.075 25 N -0.200 5.200 26 C -0.055 4.055 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.199 0.801 45 H 0.197 0.803 46 H 0.171 0.829 47 H 0.122 0.878 48 H 0.252 0.748 49 H 0.175 0.825 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.928 -0.480 1.340 2.396 hybrid contribution -0.139 0.863 1.108 1.411 sum -2.067 0.383 2.448 3.227 Atomic orbital electron populations 1.21546 0.94152 1.01912 1.01812 1.25853 1.00436 1.02889 1.12902 1.21612 1.01293 0.94770 1.02227 1.21547 1.01013 1.00126 0.96742 0.76165 0.62438 0.52487 0.64095 1.27132 1.06938 1.09904 1.18152 1.27124 1.25367 1.05063 1.04613 1.85282 1.79621 1.46491 1.47482 1.20682 0.98164 0.87632 0.87291 1.18801 1.01950 0.96349 0.95132 1.25495 1.04288 0.98169 1.04201 1.84431 1.50288 1.08322 1.18072 1.25953 1.03996 1.01706 1.01917 1.17324 1.01821 0.93449 0.95544 1.19516 0.95143 1.00663 0.92705 1.21722 1.00202 0.94189 0.90113 1.20479 0.95368 1.00740 0.96383 1.24602 1.08717 0.86726 0.98403 1.86448 1.91270 1.19129 1.40179 0.85440 0.78035 0.79824 0.77671 1.19389 1.17979 1.17127 1.22877 0.93603 0.95671 0.95381 1.67684 1.35562 1.17611 0.99187 1.23230 0.90074 0.94390 0.97831 0.92248 0.93270 0.92289 0.91855 0.93010 0.91902 0.92263 0.93290 0.92178 0.91502 0.90329 0.91066 0.90901 0.90362 0.91236 0.90354 0.90897 0.80147 0.80343 0.82866 0.87802 0.74773 0.82548 0.81144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.02 7.85 71.98 0.56 0.59 16 2 C -0.38 0.35 0.53 -10.80 -0.01 0.35 16 3 C -0.14 0.19 7.85 71.98 0.56 0.76 16 4 C -0.14 0.02 7.85 71.98 0.56 0.59 16 5 Si 1.32 -3.05 8.45 68.60 0.58 -2.47 16 6 C -0.52 0.61 8.50 113.37 0.96 1.57 16 7 C -0.52 0.70 8.50 113.37 0.96 1.66 16 8 O -0.63 0.01 7.42 -148.98 -1.11 -1.09 16 9 C 0.14 -0.01 4.47 71.24 0.32 0.31 16 10 C -0.11 -0.20 5.79 -20.75 -0.12 -0.32 16 11 C -0.19 -0.30 10.41 66.66 0.69 0.40 16 12 S 0.12 0.04 23.32 -56.49 -1.32 -1.27 16 13 C -0.20 -0.11 10.86 66.98 0.73 0.62 16 14 C -0.07 -0.12 5.38 -21.15 -0.11 -0.23 16 15 C -0.08 -0.17 5.31 -19.95 -0.11 -0.28 16 16 C -0.04 -0.05 9.42 22.68 0.21 0.17 16 17 C -0.13 -0.21 5.39 -19.80 -0.11 -0.32 16 18 C -0.07 0.25 2.81 71.24 0.20 0.45 16 19 O -0.56 1.51 12.82 -148.98 -1.91 -0.40 16 20 Si 0.97 -2.79 25.16 68.60 1.73 -1.06 16 21 H -0.27 -0.32 7.04 99.48 0.70 0.38 16 22 H -0.26 0.34 7.11 99.48 0.71 1.05 16 23 H -0.25 0.88 7.11 99.48 0.71 1.59 16 24 C 0.08 0.35 9.84 84.69 0.83 1.18 16 25 N -0.49 -3.20 10.35 -194.93 -2.02 -5.22 16 26 C 0.10 0.36 9.77 84.98 0.83 1.19 16 27 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 28 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.06 0.00 7.97 -2.39 -0.02 -0.02 16 30 H 0.06 -0.17 7.79 -2.38 -0.02 -0.19 16 31 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 33 H 0.06 -0.01 7.97 -2.39 -0.02 -0.02 16 34 H 0.05 0.03 8.14 -2.39 -0.02 0.02 16 35 H 0.06 -0.08 7.79 -2.38 -0.02 -0.09 16 36 H 0.07 -0.07 7.48 -2.39 -0.02 -0.09 16 37 H 0.08 -0.15 7.79 -2.39 -0.02 -0.17 16 38 H 0.07 -0.05 7.79 -2.39 -0.02 -0.07 16 39 H 0.07 -0.07 7.79 -2.39 -0.02 -0.09 16 40 H 0.08 -0.15 7.79 -2.39 -0.02 -0.17 16 41 H 0.07 -0.10 7.48 -2.39 -0.02 -0.12 16 42 H 0.08 -0.19 5.24 -2.38 -0.01 -0.20 16 43 H 0.07 -0.10 7.21 -2.39 -0.02 -0.11 16 44 H 0.18 0.06 7.48 -2.91 -0.02 0.04 16 45 H 0.18 -0.41 8.06 -2.91 -0.02 -0.43 16 46 H 0.15 -0.28 8.06 -2.91 -0.02 -0.30 16 47 H 0.10 -0.84 7.96 -2.39 -0.02 -0.86 16 48 H 0.40 -4.68 8.74 -74.06 -0.65 -5.32 16 49 H 0.16 0.27 4.87 -2.91 -0.01 0.26 16 50 H 0.17 -0.01 6.56 -2.91 -0.02 -0.03 16 Total: 0.00 -12.06 411.13 3.98 -8.08 By element: Atomic # 1 Polarization: -6.28 SS G_CDS: 1.04 Total: -5.24 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.99 Total: 8.68 kcal Atomic # 7 Polarization: -3.20 SS G_CDS: -2.02 Total: -5.22 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: -3.01 Total: -1.49 kcal Atomic # 14 Polarization: -5.83 SS G_CDS: 2.31 Total: -3.53 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -1.32 Total: -1.27 kcal Total: -12.06 3.98 -8.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13142264_15607708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.833 kcal (2) G-P(sol) polarization free energy of solvation -12.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds