Wall clock time and date at job start Mon Mar 8 2021 05:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86299 * 109.47098 * 2 1 4 4 C 1.86298 * 109.47290 * 240.00014 * 2 1 3 5 5 C 1.86300 * 109.47278 * 120.00218 * 2 1 3 6 6 C 1.52995 * 109.47465 * 59.99685 * 5 2 1 7 7 O 1.42891 * 109.47451 * 180.02562 * 6 5 2 8 8 C 1.35641 * 117.00149 * 180.02562 * 7 6 5 9 9 C 1.40318 * 120.22664 * 180.02562 * 8 7 6 10 10 C 1.48312 * 121.16320 * 359.95336 * 9 8 7 11 11 C 1.39757 * 120.54275 * 130.02337 * 10 9 8 12 12 C 1.38450 * 118.30873 * 179.97438 * 11 10 9 13 13 C 1.50694 * 120.35824 * 180.02562 * 12 11 10 14 14 O 1.42901 * 109.47397 * 300.00127 * 13 12 11 15 15 Si 1.86297 * 109.47330 * 180.02562 * 13 12 11 16 16 H 1.48495 * 109.47362 * 60.00028 * 15 13 12 17 17 H 1.48503 * 109.47167 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47133 * 300.00051 * 15 13 12 19 19 C 1.38275 * 119.28571 * 0.02562 * 12 11 10 20 20 N 1.31923 * 121.04216 * 359.97438 * 19 12 11 21 21 C 1.31704 * 121.85418 * 0.02562 * 20 19 12 22 22 C 1.39837 * 117.68249 * 180.22483 * 9 8 7 23 23 C 1.38482 * 117.88829 * 359.51589 * 22 9 8 24 24 C 1.50695 * 119.95523 * 180.25956 * 23 22 9 25 25 F 1.39893 * 109.47537 * 185.23324 * 24 23 22 26 26 F 1.39902 * 109.47053 * 305.23460 * 24 23 22 27 27 F 1.39901 * 109.47267 * 65.23330 * 24 23 22 28 28 N 1.31896 * 120.08932 * 0.49504 * 23 22 9 29 29 N 1.28280 * 122.57150 * 359.74019 * 28 23 22 30 30 H 1.09008 * 109.47367 * 299.99875 * 1 2 3 31 31 H 1.08997 * 109.47511 * 59.99983 * 1 2 3 32 32 H 1.09001 * 109.47258 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46986 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47340 * 299.99992 * 3 2 1 35 35 H 1.09001 * 109.47119 * 60.00475 * 3 2 1 36 36 H 1.09001 * 109.46989 * 300.00188 * 4 2 1 37 37 H 1.09005 * 109.47161 * 59.99454 * 4 2 1 38 38 H 1.08994 * 109.47589 * 179.97438 * 4 2 1 39 39 H 1.09006 * 109.46804 * 299.99687 * 5 2 1 40 40 H 1.08996 * 109.47399 * 180.02562 * 5 2 1 41 41 H 1.09001 * 109.46857 * 59.99790 * 6 5 2 42 42 H 1.09004 * 109.47462 * 300.00461 * 6 5 2 43 43 H 1.07993 * 120.84891 * 359.97438 * 11 10 9 44 44 H 1.08997 * 109.46839 * 59.99987 * 13 12 11 45 45 H 0.96692 * 114.00090 * 300.00186 * 14 13 12 46 46 H 1.08010 * 119.47918 * 180.02562 * 19 12 11 47 47 H 1.08002 * 119.70914 * 180.27476 * 21 20 19 48 48 H 1.08003 * 121.05821 * 179.72246 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3207 1.5212 7 8 2.4499 -2.9942 2.6881 8 6 2.0858 -4.2917 2.8418 9 6 2.5147 -5.0177 3.9634 10 6 3.3704 -4.3925 5.0010 11 6 3.0338 -4.4920 6.3538 12 6 3.8658 -3.8914 7.2832 13 6 3.5472 -3.9705 8.7540 14 8 2.2738 -3.3699 8.9985 15 14 4.8562 -3.0654 9.7226 16 1 4.8900 -1.6424 9.2993 17 1 4.5425 -3.1439 11.1720 18 1 6.1798 -3.6890 9.4686 19 6 4.9923 -3.2182 6.8475 20 7 5.2844 -3.1410 5.5633 21 6 4.5235 -3.6961 4.6428 22 6 2.1120 -6.3529 4.0660 23 6 1.3096 -6.8665 3.0610 24 6 0.8438 -8.2980 3.1276 25 9 0.1532 -8.6190 1.9541 26 9 1.9507 -9.1428 3.2632 27 9 -0.0051 -8.4615 4.2276 28 7 0.9564 -6.1057 2.0431 29 7 1.3236 -4.8812 1.9359 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.5740 1.7564 0.0005 34 1 2.1206 2.2703 -0.8900 35 1 2.1207 2.2703 0.8900 36 1 2.1206 -1.9059 -1.5211 37 1 2.1206 -0.3644 -2.4111 38 1 3.5739 -0.8778 -1.5214 39 1 2.1207 -0.3644 2.4111 40 1 3.5740 -0.8779 1.5213 41 1 2.3373 -2.8345 0.6311 42 1 0.8840 -2.3208 1.5212 43 1 2.1474 -5.0238 6.6662 44 1 3.5219 -5.0149 9.0646 45 1 2.2233 -2.4380 8.7454 46 1 5.6437 -2.7488 7.5699 47 1 4.7979 -3.6152 3.6013 48 1 2.4144 -6.9632 4.9041 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13142264_17781646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:12:00 Heat of formation + Delta-G solvation = -164.927596 kcal Electronic energy + Delta-G solvation = -35747.605000 eV Core-core repulsion = 30512.388020 eV Total energy + Delta-G solvation = -5235.216979 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 401.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -51.24475 -48.78287 -48.68201 -42.87570 -41.48777 -39.97630 -38.11978 -36.02307 -34.39920 -33.73465 -32.63370 -31.57905 -29.55574 -28.54353 -28.52527 -28.07782 -27.46375 -26.72882 -25.07334 -24.19821 -23.75809 -22.67362 -20.26722 -19.83838 -19.66050 -19.63810 -18.98354 -18.41671 -18.19109 -17.82038 -17.55373 -16.72659 -16.40193 -16.05351 -15.78694 -15.71459 -15.56498 -15.53283 -15.44199 -15.13540 -15.07071 -14.84317 -14.82037 -14.80991 -14.41283 -14.40887 -14.34334 -14.25889 -14.18362 -13.94617 -13.83482 -13.52182 -13.39270 -13.29384 -13.19520 -12.93001 -12.81096 -12.77066 -12.33784 -12.24142 -12.11981 -11.99745 -11.33115 -11.14935 -11.02200 -10.93527 -10.93132 -10.85353 -10.69749 -10.48832 -10.01170 -1.07654 -0.74119 -0.19941 -0.01060 0.93145 1.05864 1.27664 1.28766 1.33779 1.67217 1.72773 1.75563 1.84010 1.86095 2.30262 2.38426 2.44117 2.49919 2.73983 2.99325 3.13936 3.20223 3.21546 3.23047 3.33742 3.45432 3.58680 3.63400 3.79924 3.85463 3.87510 3.94954 4.17567 4.25213 4.28760 4.38949 4.41600 4.61438 4.62074 4.65558 4.65973 4.66616 4.67808 4.69999 4.77674 4.81534 5.00894 5.28412 5.37282 5.45590 5.46952 5.71685 6.30623 6.65078 7.05025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.028 2.972 3 C -0.450 4.450 4 C -0.455 4.455 5 C -0.423 4.423 6 C 0.070 3.930 7 O -0.283 6.283 8 C 0.304 3.696 9 C -0.053 4.053 10 C -0.106 4.106 11 C -0.023 4.023 12 C -0.172 4.172 13 C -0.076 4.076 14 O -0.535 6.535 15 Si 0.942 3.058 16 H -0.247 1.247 17 H -0.246 1.246 18 H -0.245 1.245 19 C 0.109 3.891 20 N -0.471 5.471 21 C 0.146 3.854 22 C -0.033 4.033 23 C -0.054 4.054 24 C 0.536 3.464 25 F -0.156 7.156 26 F -0.166 7.166 27 F -0.166 7.166 28 N -0.143 5.143 29 N -0.282 5.282 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.145 0.855 44 H 0.124 0.876 45 H 0.378 0.622 46 H 0.155 0.845 47 H 0.162 0.838 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 3.053 1.668 3.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.222 2.778 3 C -0.558 4.558 4 C -0.562 4.562 5 C -0.505 4.505 6 C -0.004 4.004 7 O -0.186 6.186 8 C 0.119 3.881 9 C -0.066 4.066 10 C -0.109 4.109 11 C -0.049 4.049 12 C -0.174 4.174 13 C -0.188 4.188 14 O -0.340 6.340 15 Si 0.763 3.237 16 H -0.170 1.170 17 H -0.170 1.170 18 H -0.169 1.169 19 C -0.047 4.047 20 N -0.178 5.178 21 C -0.012 4.012 22 C -0.060 4.060 23 C -0.202 4.202 24 C 0.480 3.520 25 F -0.137 7.137 26 F -0.148 7.148 27 F -0.147 7.147 28 N 0.012 4.988 29 N -0.140 5.140 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.163 0.837 44 H 0.142 0.858 45 H 0.226 0.774 46 H 0.172 0.828 47 H 0.179 0.821 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.224 3.720 0.872 4.421 hybrid contribution -0.365 -0.557 0.924 1.139 sum 1.860 3.163 1.796 4.085 Atomic orbital electron populations 1.26192 1.20579 1.04731 1.04742 0.78970 0.67002 0.66910 0.64925 1.26103 1.06419 1.18528 1.04733 1.26186 1.06407 1.08235 1.15384 1.26642 1.07507 0.98707 1.17598 1.22794 1.00089 0.92014 0.85520 1.86413 1.68708 1.17514 1.45948 1.21726 0.89262 0.86946 0.90142 1.18826 1.00331 0.92851 0.94572 1.19300 0.96899 1.02285 0.92367 1.21519 0.98218 0.94716 0.90419 1.21322 0.97154 1.01055 0.97883 1.24930 0.94914 1.05164 0.93745 1.86540 1.31260 1.29607 1.86639 0.85769 0.77257 0.80121 0.80521 1.16997 1.16984 1.16878 1.22844 0.94193 0.94537 0.93116 1.67769 1.30597 1.18024 1.01392 1.22949 0.88789 0.89927 0.99530 1.22077 0.92039 0.93764 0.98148 1.22443 1.03828 0.96808 0.97165 1.17363 0.75560 0.84316 0.74775 1.93280 1.79588 1.93461 1.47345 1.93269 1.53035 1.72867 1.95580 1.93274 1.71394 1.95989 1.54050 1.72663 1.11866 0.97762 1.16558 1.73280 1.13441 1.03582 1.23688 0.91142 0.90873 0.91052 0.91076 0.90857 0.91123 0.91041 0.90878 0.91094 0.89332 0.89192 0.90353 0.90459 0.83677 0.85810 0.77439 0.82770 0.82094 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.04 8.65 101.05 0.87 1.92 16 2 Si 1.03 -3.81 12.19 -169.99 -2.07 -5.88 16 3 C -0.45 1.12 8.65 101.05 0.87 1.99 16 4 C -0.45 1.08 8.65 101.05 0.87 1.95 16 5 C -0.42 1.09 4.82 37.15 0.18 1.27 16 6 C 0.07 -0.07 4.70 37.15 0.17 0.10 16 7 O -0.28 -0.14 8.70 -18.62 -0.16 -0.30 16 8 C 0.30 0.35 7.52 -16.59 -0.12 0.23 16 9 C -0.05 0.01 5.54 -104.37 -0.58 -0.57 16 10 C -0.11 0.05 5.35 -104.76 -0.56 -0.51 16 11 C -0.02 0.03 9.33 -38.94 -0.36 -0.33 16 12 C -0.17 0.24 5.39 -104.53 -0.56 -0.32 16 13 C -0.08 0.19 2.83 36.00 0.10 0.30 16 14 O -0.54 0.88 12.78 -35.23 -0.45 0.43 16 15 Si 0.94 -2.22 25.10 -169.99 -4.27 -6.49 16 16 H -0.25 0.51 7.11 56.52 0.40 0.91 16 17 H -0.25 0.19 7.11 56.52 0.40 0.59 16 18 H -0.25 0.45 7.11 56.52 0.40 0.85 16 19 C 0.11 -0.03 9.84 -17.50 -0.17 -0.20 16 20 N -0.47 -0.65 10.35 -12.96 -0.13 -0.79 16 21 C 0.15 0.05 10.05 -17.18 -0.17 -0.12 16 22 C -0.03 0.03 9.32 -38.89 -0.36 -0.33 16 23 C -0.05 -0.06 6.34 -82.48 -0.52 -0.58 16 24 C 0.54 0.59 3.33 36.00 0.12 0.71 16 25 F -0.16 -0.42 16.87 2.25 0.04 -0.38 16 26 F -0.17 -0.14 17.16 2.25 0.04 -0.10 16 27 F -0.17 -0.17 17.29 2.25 0.04 -0.13 16 28 N -0.14 -0.43 10.88 33.56 0.37 -0.07 16 29 N -0.28 -0.72 10.40 30.70 0.32 -0.40 16 30 H 0.07 -0.15 7.96 -51.92 -0.41 -0.57 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.14 7.79 -51.93 -0.40 -0.55 16 33 H 0.07 -0.17 7.96 -51.92 -0.41 -0.58 16 34 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 35 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 36 H 0.07 -0.15 7.79 -51.93 -0.40 -0.55 16 37 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 38 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 39 H 0.09 -0.22 7.96 -51.93 -0.41 -0.63 16 40 H 0.09 -0.24 7.96 -51.93 -0.41 -0.65 16 41 H 0.08 -0.12 7.76 -51.93 -0.40 -0.53 16 42 H 0.08 -0.10 7.77 -51.93 -0.40 -0.50 16 43 H 0.15 -0.38 8.06 -52.49 -0.42 -0.80 16 44 H 0.12 -0.45 7.96 -51.93 -0.41 -0.86 16 45 H 0.38 -1.73 8.70 45.56 0.40 -1.33 16 46 H 0.16 -0.27 4.88 -52.48 -0.26 -0.52 16 47 H 0.16 -0.10 7.78 -52.49 -0.41 -0.51 16 48 H 0.17 -0.63 8.06 -52.48 -0.42 -1.06 16 LS Contribution 421.56 15.07 6.35 6.35 Total: 0.00 -6.62 421.56 -5.81 -12.43 By element: Atomic # 1 Polarization: -4.52 SS G_CDS: -5.66 Total: -10.18 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -0.22 Total: 5.49 kcal Atomic # 7 Polarization: -1.80 SS G_CDS: 0.55 Total: -1.25 kcal Atomic # 8 Polarization: 0.74 SS G_CDS: -0.61 Total: 0.13 kcal Atomic # 9 Polarization: -0.72 SS G_CDS: 0.12 Total: -0.61 kcal Atomic # 14 Polarization: -6.03 SS G_CDS: -6.34 Total: -12.37 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -6.62 -5.81 -12.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13142264_17781646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.497 kcal (2) G-P(sol) polarization free energy of solvation -6.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds