Wall clock time and date at job start Mon Mar 8 2021 05:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86299 * 109.47098 * 2 1 4 4 C 1.86298 * 109.47290 * 240.00014 * 2 1 3 5 5 C 1.86300 * 109.47278 * 120.00218 * 2 1 3 6 6 C 1.52995 * 109.47465 * 59.99685 * 5 2 1 7 7 O 1.42891 * 109.47451 * 180.02562 * 6 5 2 8 8 C 1.35641 * 117.00149 * 180.02562 * 7 6 5 9 9 C 1.40318 * 120.22664 * 180.02562 * 8 7 6 10 10 C 1.48312 * 121.16320 * 359.95336 * 9 8 7 11 11 C 1.39757 * 120.54275 * 130.02337 * 10 9 8 12 12 C 1.38450 * 118.30873 * 179.97438 * 11 10 9 13 13 C 1.50694 * 120.35824 * 180.02562 * 12 11 10 14 14 O 1.42901 * 109.47397 * 300.00127 * 13 12 11 15 15 Si 1.86297 * 109.47330 * 180.02562 * 13 12 11 16 16 H 1.48495 * 109.47362 * 60.00028 * 15 13 12 17 17 H 1.48503 * 109.47167 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47133 * 300.00051 * 15 13 12 19 19 C 1.38275 * 119.28571 * 0.02562 * 12 11 10 20 20 N 1.31923 * 121.04216 * 359.97438 * 19 12 11 21 21 C 1.31704 * 121.85418 * 0.02562 * 20 19 12 22 22 C 1.39837 * 117.68249 * 180.22483 * 9 8 7 23 23 C 1.38482 * 117.88829 * 359.51589 * 22 9 8 24 24 C 1.50695 * 119.95523 * 180.25956 * 23 22 9 25 25 F 1.39893 * 109.47537 * 185.23324 * 24 23 22 26 26 F 1.39902 * 109.47053 * 305.23460 * 24 23 22 27 27 F 1.39901 * 109.47267 * 65.23330 * 24 23 22 28 28 N 1.31896 * 120.08932 * 0.49504 * 23 22 9 29 29 N 1.28280 * 122.57150 * 359.74019 * 28 23 22 30 30 H 1.09008 * 109.47367 * 299.99875 * 1 2 3 31 31 H 1.08997 * 109.47511 * 59.99983 * 1 2 3 32 32 H 1.09001 * 109.47258 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46986 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47340 * 299.99992 * 3 2 1 35 35 H 1.09001 * 109.47119 * 60.00475 * 3 2 1 36 36 H 1.09001 * 109.46989 * 300.00188 * 4 2 1 37 37 H 1.09005 * 109.47161 * 59.99454 * 4 2 1 38 38 H 1.08994 * 109.47589 * 179.97438 * 4 2 1 39 39 H 1.09006 * 109.46804 * 299.99687 * 5 2 1 40 40 H 1.08996 * 109.47399 * 180.02562 * 5 2 1 41 41 H 1.09001 * 109.46857 * 59.99790 * 6 5 2 42 42 H 1.09004 * 109.47462 * 300.00461 * 6 5 2 43 43 H 1.07993 * 120.84891 * 359.97438 * 11 10 9 44 44 H 1.08997 * 109.46839 * 59.99987 * 13 12 11 45 45 H 0.96692 * 114.00090 * 300.00186 * 14 13 12 46 46 H 1.08010 * 119.47918 * 180.02562 * 19 12 11 47 47 H 1.08002 * 119.70914 * 180.27476 * 21 20 19 48 48 H 1.08003 * 121.05821 * 179.72246 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3207 1.5212 7 8 2.4499 -2.9942 2.6881 8 6 2.0858 -4.2917 2.8418 9 6 2.5147 -5.0177 3.9634 10 6 3.3704 -4.3925 5.0010 11 6 3.0338 -4.4920 6.3538 12 6 3.8658 -3.8914 7.2832 13 6 3.5472 -3.9705 8.7540 14 8 2.2738 -3.3699 8.9985 15 14 4.8562 -3.0654 9.7226 16 1 4.8900 -1.6424 9.2993 17 1 4.5425 -3.1439 11.1720 18 1 6.1798 -3.6890 9.4686 19 6 4.9923 -3.2182 6.8475 20 7 5.2844 -3.1410 5.5633 21 6 4.5235 -3.6961 4.6428 22 6 2.1120 -6.3529 4.0660 23 6 1.3096 -6.8665 3.0610 24 6 0.8438 -8.2980 3.1276 25 9 0.1532 -8.6190 1.9541 26 9 1.9507 -9.1428 3.2632 27 9 -0.0051 -8.4615 4.2276 28 7 0.9564 -6.1057 2.0431 29 7 1.3236 -4.8812 1.9359 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.5740 1.7564 0.0005 34 1 2.1206 2.2703 -0.8900 35 1 2.1207 2.2703 0.8900 36 1 2.1206 -1.9059 -1.5211 37 1 2.1206 -0.3644 -2.4111 38 1 3.5739 -0.8778 -1.5214 39 1 2.1207 -0.3644 2.4111 40 1 3.5740 -0.8779 1.5213 41 1 2.3373 -2.8345 0.6311 42 1 0.8840 -2.3208 1.5212 43 1 2.1474 -5.0238 6.6662 44 1 3.5219 -5.0149 9.0646 45 1 2.2233 -2.4380 8.7454 46 1 5.6437 -2.7488 7.5699 47 1 4.7979 -3.6152 3.6013 48 1 2.4144 -6.9632 4.9041 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13142264_17781646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:11:59 Heat of formation + Delta-G solvation = -160.023859 kcal Electronic energy + Delta-G solvation = -35747.392358 eV Core-core repulsion = 30512.388020 eV Total energy + Delta-G solvation = -5235.004337 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 401.130 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -51.33974 -48.85505 -48.81111 -42.89846 -41.42929 -39.96681 -37.95459 -36.01214 -34.41748 -33.63964 -32.53089 -31.54051 -29.36372 -28.34344 -28.33147 -28.13387 -27.33321 -26.69253 -25.06433 -24.15234 -23.66634 -22.61614 -20.28966 -19.87297 -19.73730 -19.66138 -18.96138 -18.36770 -18.12508 -17.74654 -17.48918 -16.63507 -16.25016 -16.06745 -15.73511 -15.68414 -15.58172 -15.51238 -15.48101 -15.22943 -14.94005 -14.93716 -14.92948 -14.75839 -14.31032 -14.27881 -14.24930 -14.19386 -14.01040 -13.76680 -13.68855 -13.42555 -13.20384 -13.12001 -13.00870 -12.86637 -12.78303 -12.63102 -12.17251 -12.16753 -12.02681 -11.96148 -11.32723 -11.07194 -10.87421 -10.79596 -10.74681 -10.72854 -10.61567 -10.36979 -9.97386 -1.07245 -0.74632 -0.13514 0.06068 1.03493 1.13117 1.35790 1.45883 1.50649 1.79879 1.90490 1.92132 1.96578 2.02075 2.24855 2.37915 2.50084 2.64467 2.77866 3.01330 3.11319 3.13359 3.29457 3.38203 3.48087 3.59833 3.66745 3.75550 3.87047 3.90260 4.00603 4.05888 4.27818 4.37158 4.38812 4.46378 4.62040 4.79875 4.80791 4.83314 4.84919 4.85359 4.85627 4.87217 4.88304 4.91087 5.17503 5.37225 5.56698 5.65073 5.65727 5.76231 6.62989 6.71180 6.99245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.472 4.472 2 Si 1.103 2.897 3 C -0.464 4.464 4 C -0.471 4.471 5 C -0.427 4.427 6 C 0.061 3.939 7 O -0.287 6.287 8 C 0.297 3.703 9 C -0.049 4.049 10 C -0.105 4.105 11 C -0.020 4.020 12 C -0.165 4.165 13 C -0.068 4.068 14 O -0.548 6.548 15 Si 0.969 3.031 16 H -0.252 1.252 17 H -0.270 1.270 18 H -0.252 1.252 19 C 0.100 3.900 20 N -0.496 5.496 21 C 0.137 3.863 22 C -0.023 4.023 23 C -0.056 4.056 24 C 0.541 3.459 25 F -0.167 7.167 26 F -0.163 7.163 27 F -0.164 7.164 28 N -0.171 5.171 29 N -0.300 5.300 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.162 0.838 44 H 0.139 0.861 45 H 0.390 0.610 46 H 0.164 0.836 47 H 0.163 0.837 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.687 2.915 2.606 4.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.578 4.578 2 Si 1.292 2.708 3 C -0.571 4.571 4 C -0.577 4.577 5 C -0.508 4.508 6 C -0.013 4.013 7 O -0.190 6.190 8 C 0.113 3.887 9 C -0.062 4.062 10 C -0.108 4.108 11 C -0.045 4.045 12 C -0.168 4.168 13 C -0.180 4.180 14 O -0.355 6.355 15 Si 0.793 3.207 16 H -0.175 1.175 17 H -0.194 1.194 18 H -0.176 1.176 19 C -0.056 4.056 20 N -0.203 5.203 21 C -0.021 4.021 22 C -0.049 4.049 23 C -0.205 4.205 24 C 0.484 3.516 25 F -0.149 7.149 26 F -0.145 7.145 27 F -0.145 7.145 28 N -0.016 5.016 29 N -0.158 5.158 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.180 0.820 44 H 0.156 0.844 45 H 0.239 0.761 46 H 0.181 0.819 47 H 0.181 0.819 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.322 3.595 1.793 4.640 hybrid contribution -0.383 -0.488 0.667 0.911 sum 1.939 3.107 2.460 4.412 Atomic orbital electron populations 1.26405 1.22255 1.04447 1.04679 0.77809 0.64888 0.65104 0.62985 1.26275 1.06580 1.19569 1.04705 1.26392 1.06593 1.08335 1.16404 1.26801 1.07768 0.97806 1.18433 1.22985 1.00294 0.92723 0.85308 1.86427 1.68760 1.17308 1.46512 1.21887 0.89186 0.87241 0.90413 1.18887 1.00069 0.93025 0.94198 1.19249 0.96567 1.02321 0.92667 1.21720 0.98556 0.94370 0.89896 1.21396 0.96555 1.00339 0.98462 1.24902 0.94446 1.05935 0.92694 1.86517 1.31503 1.30759 1.86713 0.85388 0.76843 0.79708 0.78795 1.17528 1.19446 1.17639 1.23068 0.94884 0.94818 0.92860 1.67746 1.31452 1.18944 1.02194 1.23017 0.89193 0.90243 0.99613 1.22371 0.90729 0.93585 0.98234 1.22500 1.04123 0.96553 0.97372 1.17322 0.75468 0.84379 0.74395 1.93254 1.79901 1.93570 1.48129 1.93273 1.52840 1.72821 1.95534 1.93276 1.71393 1.95996 1.53857 1.72573 1.13005 0.98235 1.17804 1.73209 1.14362 1.03632 1.24549 0.91146 0.91002 0.91452 0.91038 0.90961 0.91101 0.91404 0.91021 0.91043 0.89235 0.88917 0.90109 0.90425 0.82009 0.84351 0.76107 0.81922 0.81950 0.78158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.96 8.65 113.37 0.98 2.94 16 2 Si 1.10 -8.01 12.19 68.60 0.84 -7.17 16 3 C -0.46 2.33 8.65 113.37 0.98 3.31 16 4 C -0.47 2.03 8.65 113.37 0.98 3.02 16 5 C -0.43 2.13 4.82 71.98 0.35 2.47 16 6 C 0.06 -0.09 4.70 71.98 0.34 0.25 16 7 O -0.29 -0.45 8.70 -89.55 -0.78 -1.23 16 8 C 0.30 0.82 7.52 85.14 0.64 1.46 16 9 C -0.05 0.03 5.54 -19.70 -0.11 -0.08 16 10 C -0.11 0.16 5.35 -19.95 -0.11 0.05 16 11 C -0.02 0.08 9.33 22.69 0.21 0.29 16 12 C -0.17 0.65 5.39 -19.81 -0.11 0.54 16 13 C -0.07 0.44 2.83 71.23 0.20 0.64 16 14 O -0.55 2.55 12.78 -148.98 -1.90 0.64 16 15 Si 0.97 -4.94 25.10 68.60 1.72 -3.22 16 16 H -0.25 1.11 7.11 99.48 0.71 1.82 16 17 H -0.27 0.33 7.11 99.48 0.71 1.04 16 18 H -0.25 1.00 7.11 99.48 0.71 1.71 16 19 C 0.10 -0.09 9.84 84.69 0.83 0.74 16 20 N -0.50 -1.42 10.35 -194.91 -2.02 -3.43 16 21 C 0.14 0.11 10.05 84.99 0.85 0.96 16 22 C -0.02 0.06 9.32 22.72 0.21 0.27 16 23 C -0.06 -0.12 6.34 42.61 0.27 0.15 16 24 C 0.54 1.11 3.33 71.23 0.24 1.35 16 25 F -0.17 -0.99 16.87 44.97 0.76 -0.23 16 26 F -0.16 -0.19 17.16 44.97 0.77 0.58 16 27 F -0.16 -0.24 17.29 44.97 0.78 0.53 16 28 N -0.17 -1.17 10.88 -47.72 -0.52 -1.68 16 29 N -0.30 -1.79 10.40 -169.68 -1.77 -3.56 16 30 H 0.07 -0.29 7.96 -2.38 -0.02 -0.30 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.07 -0.22 7.79 -2.39 -0.02 -0.23 16 33 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 36 H 0.07 -0.23 7.79 -2.39 -0.02 -0.25 16 37 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 38 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 39 H 0.09 -0.44 7.96 -2.38 -0.02 -0.46 16 40 H 0.09 -0.49 7.96 -2.39 -0.02 -0.51 16 41 H 0.08 -0.18 7.76 -2.39 -0.02 -0.20 16 42 H 0.08 -0.13 7.77 -2.39 -0.02 -0.15 16 43 H 0.16 -1.21 8.06 -2.91 -0.02 -1.24 16 44 H 0.14 -1.27 7.96 -2.39 -0.02 -1.29 16 45 H 0.39 -3.98 8.70 -74.06 -0.64 -4.62 16 46 H 0.16 -0.61 4.88 -2.91 -0.01 -0.62 16 47 H 0.16 -0.10 7.78 -2.91 -0.02 -0.12 16 48 H 0.20 -1.92 8.06 -2.91 -0.02 -1.95 16 Total: 0.00 -15.52 421.56 5.78 -9.75 By element: Atomic # 1 Polarization: -10.50 SS G_CDS: 1.13 Total: -9.37 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 6.77 Total: 18.39 kcal Atomic # 7 Polarization: -4.38 SS G_CDS: -4.30 Total: -8.68 kcal Atomic # 8 Polarization: 2.10 SS G_CDS: -2.68 Total: -0.59 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 2.31 Total: 0.88 kcal Atomic # 14 Polarization: -12.94 SS G_CDS: 2.56 Total: -10.39 kcal Total: -15.52 5.78 -9.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13142264_17781646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.277 kcal (2) G-P(sol) polarization free energy of solvation -15.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds