Wall clock time and date at job start Mon Mar 8 2021 05:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 H 1.48494 * 109.46934 * 60.00049 * 3 2 1 5 5 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 6 6 H 1.48495 * 109.46973 * 300.00306 * 3 2 1 7 7 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 8 8 C 1.38003 * 120.05864 * 255.27788 * 7 2 1 9 9 C 1.38340 * 120.12117 * 179.97438 * 8 7 2 10 10 C 1.38299 * 120.24432 * 0.02562 * 9 8 7 11 11 C 1.38040 * 120.12154 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.06316 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.47256 * 0.02562 * 12 11 10 14 14 C 1.39320 * 119.87649 * 359.75305 * 11 10 9 15 15 C 1.48392 * 120.12057 * 180.02562 * 14 11 10 16 16 C 1.39318 * 120.12044 * 295.27363 * 15 14 11 17 17 C 1.38039 * 119.87869 * 179.97438 * 16 15 14 18 Xx 1.80994 * 119.93958 * 180.02562 * 17 16 15 19 18 F 7.73085 * 106.50438 * 206.94618 * 2 1 3 20 19 F 1.61000 * 89.99991 * 135.00205 * 18 17 16 21 20 F 1.60997 * 90.00275 * 314.99999 * 18 17 16 22 21 F 1.61003 * 89.99857 * 225.00048 * 18 17 16 23 22 F 1.61003 * 90.00143 * 45.00048 * 18 17 16 24 23 C 1.38300 * 120.11769 * 0.02562 * 17 16 15 25 24 C 1.38335 * 120.24765 * 0.02562 * 24 17 16 26 25 C 1.38001 * 120.12268 * 359.70191 * 25 24 17 27 26 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 28 27 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 29 28 H 1.08004 * 119.93888 * 359.94839 * 8 7 2 30 29 H 1.07994 * 119.88094 * 179.97438 * 9 8 7 31 30 H 1.08001 * 119.93849 * 179.97438 * 10 9 8 32 31 H 1.09002 * 109.47200 * 120.00106 * 12 11 10 33 32 H 1.09001 * 109.47263 * 240.00384 * 12 11 10 34 33 H 0.96698 * 114.00714 * 179.97438 * 13 12 11 35 34 H 1.08000 * 120.06138 * 359.95788 * 16 15 14 36 35 H 1.08007 * 119.87455 * 180.02562 * 24 17 16 37 36 H 1.08000 * 119.94458 * 179.97438 * 25 24 17 38 37 H 1.08000 * 120.06915 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 0.0006 6 1 1.5551 2.4565 -1.2124 7 6 1.9313 -0.7105 1.2304 8 6 2.4479 0.0146 2.2848 9 6 2.9089 -0.6362 3.4152 10 6 2.8554 -2.0159 3.4951 11 6 2.3407 -2.7511 2.4463 12 6 2.2836 -4.2544 2.5346 13 8 2.8159 -4.6784 3.7912 14 6 1.8698 -2.1005 1.3079 15 6 1.3149 -2.8855 0.1775 16 6 2.1356 -3.7516 -0.5417 17 6 1.6140 -4.4799 -1.5920 18 9 3.6253 -6.6076 -3.3589 19 9 1.5325 -6.7355 -2.4714 20 9 3.8245 -4.4767 -2.5827 21 9 2.0604 -5.0468 -3.9044 22 9 3.2966 -6.1654 -1.1496 23 6 0.2794 -4.3504 -1.9310 24 6 -0.5398 -3.4911 -1.2210 25 6 -0.0302 -2.7624 -0.1656 26 1 -0.3933 0.4417 0.7650 27 1 1.7924 -0.5139 -0.8900 28 1 2.4928 1.0922 2.2273 29 1 3.3128 -0.0650 4.2379 30 1 3.2171 -2.5189 4.3798 31 1 1.2483 -4.5844 2.4491 32 1 2.8713 -4.6885 1.7257 33 1 2.8103 -5.6371 3.9175 34 1 3.1780 -3.8529 -0.2781 35 1 -0.1247 -4.9224 -2.7533 36 1 -1.5811 -3.3935 -1.4903 37 1 -0.6706 -2.0921 0.3883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13205920_11652148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:59 Heat of formation + Delta-G solvation = 342.987621 kcal Electronic energy + Delta-G solvation = -30429.184196 eV Core-core repulsion = 25307.440356 eV Total energy + Delta-G solvation = -5121.743840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.085 amu Computer time = 21.74 seconds Orbital eigenvalues (eV) -44.37355 -44.25210 -44.15217 -44.07511 -43.57023 -41.84117 -40.08199 -38.16994 -37.16868 -34.41454 -32.99557 -32.43622 -30.80526 -27.34550 -26.88006 -24.63270 -23.82766 -22.10312 -21.74807 -18.67325 -18.59908 -18.13004 -17.22816 -16.99058 -16.68993 -16.40505 -16.00713 -15.73467 -15.64876 -15.23837 -15.17733 -15.13668 -15.07858 -14.90708 -14.74065 -14.50737 -14.36666 -14.15488 -14.12231 -13.96160 -13.90632 -13.68140 -13.63445 -13.59961 -13.45238 -13.30699 -13.04669 -12.83918 -12.27837 -12.26349 -12.15568 -11.97183 -11.88497 -11.56243 -11.45994 -11.34796 -10.76885 -10.76280 -10.39810 -9.84347 -9.70595 -5.25430 -4.80697 -3.13423 -0.71728 -0.59858 0.15043 0.17718 1.17295 1.45065 1.56105 1.91509 1.96461 2.48901 2.65593 2.87550 3.09705 3.40209 3.41768 3.53402 3.60901 3.71901 3.79936 3.86735 4.02737 4.24305 4.24906 4.37183 4.40035 4.43910 4.49346 4.60725 4.69563 4.84255 4.90964 4.93839 5.12391 5.24403 5.40979 5.43780 5.80504 6.76149 6.76688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.238 1.238 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.088 4.088 8 C -0.131 4.131 9 C -0.098 4.098 10 C -0.104 4.104 11 C -0.073 4.073 12 C 0.107 3.893 13 O -0.584 6.584 14 C -0.041 4.041 15 C 0.010 3.990 16 C -0.118 4.118 17 C 0.328 3.672 18 F -0.216 7.216 19 F -0.156 7.156 20 F -0.169 7.169 21 F -0.157 7.157 22 F -0.169 7.169 23 C -0.109 4.109 24 C -0.030 4.030 25 C -0.048 4.048 26 H 0.395 0.605 27 H 0.120 0.880 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.403 0.597 34 H 0.170 0.830 35 H 0.190 0.810 36 H 0.228 0.772 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.191 8.634 8.051 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.182 4.182 3 Si 0.793 3.207 4 H -0.161 1.161 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.088 4.088 8 C -0.149 4.149 9 C -0.116 4.116 10 C -0.122 4.122 11 C -0.073 4.073 12 C 0.030 3.970 13 O -0.393 6.393 14 C -0.041 4.041 15 C 0.010 3.990 16 C -0.136 4.136 17 C 0.324 3.676 18 F -0.216 7.216 19 F -0.155 7.155 20 F -0.168 7.168 21 F -0.155 7.155 22 F -0.168 7.168 23 C -0.126 4.126 24 C -0.047 4.047 25 C -0.065 4.065 26 H 0.246 0.754 27 H 0.138 0.862 28 H 0.159 0.841 29 H 0.164 0.836 30 H 0.152 0.848 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.253 0.747 34 H 0.188 0.812 35 H 0.207 0.793 36 H 0.244 0.756 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.748 9.832 7.611 15.799 hybrid contribution 1.432 -1.939 -0.418 2.446 sum -8.316 7.893 7.193 13.535 Atomic orbital electron populations 1.86465 1.15550 1.81442 1.50742 1.24760 0.86218 1.09694 0.97575 0.85396 0.79273 0.75479 0.80529 1.16123 1.19752 1.20116 1.20305 0.99507 0.92254 0.96749 1.21317 0.99241 1.00828 0.93514 1.21549 0.97289 0.94363 0.98406 1.21125 0.98134 0.94022 0.98936 1.19939 0.98190 0.95172 0.94002 1.21042 0.98963 0.90693 0.86337 1.86364 1.86179 1.30265 1.36499 1.17827 1.02724 0.91848 0.91722 1.18667 0.92434 0.93668 0.94222 1.21893 1.05189 0.94354 0.92114 1.27542 0.74040 0.80199 0.85812 2.00000 1.96100 1.55547 1.69912 1.99920 1.74751 1.67762 1.73086 1.99920 1.92127 1.32385 1.92359 1.99921 1.98601 1.49354 1.67674 1.99918 1.96257 1.80968 1.39647 1.22472 0.85558 1.00520 1.04056 1.22050 1.00889 0.90001 0.91749 1.22518 0.93205 0.95553 0.95216 0.75437 0.86229 0.84057 0.83585 0.84845 0.90221 0.92281 0.74652 0.81250 0.79262 0.75595 0.78036 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 703. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 7.58 10.11 -148.98 -1.51 6.07 16 2 C -0.07 0.72 1.99 71.23 0.14 0.86 16 3 Si 0.97 -6.79 25.51 68.60 1.75 -5.04 16 4 H -0.24 2.08 6.72 99.48 0.67 2.75 16 5 H -0.27 0.75 7.11 99.48 0.71 1.45 16 6 H -0.28 0.71 7.11 99.48 0.71 1.41 16 7 C -0.09 0.70 5.27 -19.65 -0.10 0.60 16 8 C -0.13 0.94 8.65 22.24 0.19 1.13 16 9 C -0.10 0.55 10.04 22.31 0.22 0.77 16 10 C -0.10 0.30 9.37 22.24 0.21 0.51 16 11 C -0.07 0.29 5.90 -19.65 -0.12 0.18 16 12 C 0.11 -0.51 6.29 71.24 0.45 -0.06 16 13 O -0.58 1.72 12.14 -148.98 -1.81 -0.09 16 14 C -0.04 0.29 5.32 -20.04 -0.11 0.18 16 15 C 0.01 -0.09 3.73 -20.04 -0.07 -0.17 16 16 C -0.12 0.43 6.98 22.48 0.16 0.59 16 17 C 0.33 -0.01 4.82 22.24 0.11 0.10 16 18 F -0.22 -5.80 16.66 44.97 0.75 -5.05 16 19 F -0.16 -2.36 15.30 44.97 0.69 -1.67 16 20 F -0.17 -2.93 15.30 44.97 0.69 -2.24 16 21 F -0.16 -2.45 15.30 44.97 0.69 -1.76 16 22 F -0.17 -2.74 15.31 44.97 0.69 -2.06 16 23 C -0.11 0.93 8.61 22.31 0.19 1.13 16 24 C -0.03 0.52 10.03 22.24 0.22 0.74 16 25 C -0.05 0.73 8.15 22.48 0.18 0.92 16 26 H 0.40 -8.04 8.70 -74.06 -0.64 -8.68 16 27 H 0.12 -1.21 7.49 -2.39 -0.02 -1.22 16 28 H 0.14 -1.38 4.89 -2.91 -0.01 -1.39 16 29 H 0.15 -1.30 8.06 -2.91 -0.02 -1.32 16 30 H 0.13 -0.20 7.00 -2.91 -0.02 -0.22 16 31 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.06 -0.24 6.71 -2.39 -0.02 -0.25 16 33 H 0.40 -4.12 9.12 -74.06 -0.68 -4.79 16 34 H 0.17 -0.20 6.99 -2.91 -0.02 -0.22 16 35 H 0.19 -1.75 7.38 -2.91 -0.02 -1.77 16 36 H 0.23 -5.72 8.06 -2.91 -0.02 -5.75 16 37 H 0.20 -3.99 6.64 -2.91 -0.02 -4.00 16 Total: 0.00 -33.24 330.90 4.18 -29.06 By element: Atomic # 1 Polarization: -25.27 SS G_CDS: 0.57 Total: -24.70 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 1.68 Total: 7.48 kcal Atomic # 8 Polarization: 9.30 SS G_CDS: -3.32 Total: 5.98 kcal Atomic # 9 Polarization: -16.28 SS G_CDS: 3.50 Total: -12.78 kcal Atomic # 14 Polarization: -6.79 SS G_CDS: 1.75 Total: -5.04 kcal Total: -33.24 4.18 -29.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13205920_11652148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 372.045 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 338.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 342.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.74 seconds