Wall clock time and date at job start Mon Mar 8 2021 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99963 * 2 1 4 4 O 1.20829 * 119.99988 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00423 * 180.02562 * 3 2 1 6 6 S 1.81395 * 109.47766 * 180.02562 * 5 3 2 7 7 O 1.42105 * 109.46783 * 289.05702 * 6 5 3 8 8 C 1.76193 * 103.00259 * 179.97438 * 6 5 3 9 9 C 1.38321 * 119.87994 * 269.72489 * 8 6 5 10 10 C 1.38025 * 120.12097 * 179.72483 * 9 8 6 11 11 C 1.39333 * 119.87710 * 0.54763 * 10 9 8 12 12 C 1.48394 * 120.12065 * 179.75088 * 11 10 9 13 13 C 1.39320 * 120.11627 * 244.97729 * 12 11 10 14 14 C 1.50702 * 120.06505 * 359.97438 * 13 12 11 15 15 O 1.42895 * 109.47233 * 179.97438 * 14 13 12 16 16 C 1.38041 * 119.87361 * 179.97438 * 13 12 11 17 17 C 1.38299 * 120.12044 * 0.02613 * 16 13 12 18 18 C 1.38341 * 120.24594 * 359.95108 * 17 16 13 19 19 C 1.37996 * 120.12141 * 359.77016 * 18 17 16 20 20 C 1.50696 * 120.06418 * 180.27844 * 19 18 17 21 21 O 1.42904 * 109.47171 * 255.24833 * 20 19 18 22 22 Si 1.86294 * 109.47121 * 15.24759 * 20 19 18 23 23 H 1.48503 * 109.47465 * 300.00144 * 22 20 19 24 24 H 1.48499 * 109.47177 * 60.00131 * 22 20 19 25 25 H 1.48504 * 109.47346 * 180.02562 * 22 20 19 26 26 C 1.39345 * 119.75883 * 359.72747 * 11 10 9 27 27 C 1.38015 * 119.87726 * 0.02562 * 26 11 10 28 28 H 1.09004 * 109.46856 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47028 * 299.99908 * 1 2 3 30 30 H 1.09000 * 109.46974 * 60.00080 * 1 2 3 31 31 H 1.09000 * 109.46984 * 60.00013 * 5 3 2 32 32 H 1.09001 * 109.46992 * 300.00582 * 5 3 2 33 33 H 1.07999 * 119.93998 * 0.02562 * 9 8 6 34 34 H 1.07997 * 120.05621 * 180.27753 * 10 9 8 35 35 H 1.09000 * 109.46798 * 299.99379 * 14 13 12 36 36 H 1.08998 * 109.47134 * 59.99270 * 14 13 12 37 37 H 0.96699 * 113.99974 * 179.97438 * 15 14 13 38 38 H 1.08003 * 119.93881 * 180.02562 * 16 13 12 39 39 H 1.08008 * 119.87483 * 179.97438 * 17 16 13 40 40 H 1.08001 * 119.94028 * 180.02562 * 18 17 16 41 41 H 1.08997 * 109.47475 * 135.24952 * 20 19 18 42 42 H 0.96700 * 113.99985 * 179.97438 * 21 20 19 43 43 H 1.08000 * 120.05919 * 179.97438 * 26 11 10 44 44 H 1.07995 * 119.93925 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 16 4.0807 3.0145 0.0003 7 8 3.7949 3.5935 -1.2656 8 6 5.8393 2.9078 0.0003 9 6 6.5275 2.8712 1.1996 10 6 7.9049 2.7820 1.2054 11 6 8.6028 2.7402 0.0002 12 6 10.0840 2.6499 0.0001 13 6 10.8482 3.6977 -0.5089 14 6 10.1724 4.9260 -1.0616 15 8 11.1624 5.8496 -1.5184 16 6 12.2257 3.6085 -0.5060 17 6 12.8472 2.4816 0.0005 18 6 12.0932 1.4385 0.5075 19 6 10.7156 1.5194 0.5149 20 6 9.8957 0.3850 1.0733 21 8 9.3102 -0.3534 -0.0010 22 14 10.9925 -0.7398 2.0746 23 1 12.0663 -1.2858 1.2062 24 1 11.6010 0.0275 3.1909 25 1 10.1847 -1.8580 2.6244 26 6 7.9048 2.7832 -1.2051 27 6 6.5272 2.8673 -1.1992 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9557 0.7811 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 5.9858 2.9077 2.1332 34 1 8.4408 2.7490 2.1424 35 1 9.5278 4.6427 -1.8937 36 1 9.5728 5.3934 -0.2804 37 1 10.7983 6.6655 -1.8883 38 1 12.8192 4.4203 -0.8999 39 1 13.9253 2.4159 0.0004 40 1 12.5837 0.5609 0.9022 41 1 9.1076 0.7857 1.7107 42 1 8.7675 -1.1008 0.2853 43 1 8.4409 2.7516 -2.1421 44 1 5.9852 2.9002 -2.1327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13205920_11652898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:56:47 Heat of formation + Delta-G solvation = -147.237674 kcal Electronic energy + Delta-G solvation = -30200.383108 eV Core-core repulsion = 25869.314872 eV Total energy + Delta-G solvation = -4331.068236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.46008 -41.40659 -39.53259 -38.13763 -37.61805 -37.26366 -36.86995 -34.07343 -33.11548 -32.03837 -31.79795 -30.47325 -28.26332 -27.26697 -26.89179 -24.39840 -23.74329 -22.50752 -22.02681 -21.59056 -19.38158 -18.82063 -18.56706 -18.55059 -18.17952 -17.72924 -17.65087 -17.26679 -16.70296 -16.54613 -16.30445 -15.97760 -15.72737 -15.70761 -15.45407 -15.17657 -15.14723 -14.86416 -14.60340 -14.50994 -14.40630 -13.94487 -13.81727 -13.61315 -13.47952 -13.22099 -13.13509 -13.07484 -12.84355 -12.26816 -12.24097 -12.11484 -11.95004 -11.86113 -11.76957 -11.72568 -11.40100 -11.34041 -10.41902 -10.35530 -10.00416 -9.71908 -9.63606 -9.41497 -0.43229 0.23351 0.24348 0.31436 0.61445 1.05089 1.05428 1.35719 1.41612 1.53220 1.76009 1.82377 2.47256 2.59927 2.79688 3.05188 3.36103 3.45964 3.62381 3.76827 3.81697 3.85140 3.87832 3.89321 4.00520 4.12244 4.18951 4.22170 4.23400 4.25914 4.31652 4.38307 4.40450 4.48800 4.56560 4.58836 4.68544 4.75725 4.92681 4.95690 5.14627 5.18665 5.27006 5.31678 5.40434 5.46823 5.53552 5.81626 5.89409 6.50585 6.55153 6.57262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.492 3.508 4 O -0.505 6.505 5 C -0.478 4.478 6 S 1.389 4.611 7 O -0.827 6.827 8 C -0.479 4.479 9 C -0.037 4.037 10 C -0.129 4.129 11 C 0.007 3.993 12 C -0.033 4.033 13 C -0.075 4.075 14 C 0.116 3.884 15 O -0.569 6.569 16 C -0.089 4.089 17 C -0.108 4.108 18 C -0.122 4.122 19 C -0.057 4.057 20 C -0.083 4.083 21 O -0.538 6.538 22 Si 0.941 3.059 23 H -0.247 1.247 24 H -0.246 1.246 25 H -0.254 1.254 26 C -0.116 4.116 27 C -0.045 4.045 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.156 0.844 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.387 0.613 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.077 0.923 42 H 0.378 0.622 43 H 0.126 0.874 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 -1.984 6.322 6.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.334 3.666 4 O -0.393 6.393 5 C -0.610 4.610 6 S 1.582 4.418 7 O -0.822 6.822 8 C -0.576 4.576 9 C -0.056 4.056 10 C -0.148 4.148 11 C 0.007 3.993 12 C -0.033 4.033 13 C -0.075 4.075 14 C 0.038 3.962 15 O -0.375 6.375 16 C -0.107 4.107 17 C -0.126 4.126 18 C -0.140 4.140 19 C -0.058 4.058 20 C -0.193 4.193 21 O -0.344 6.344 22 Si 0.763 3.237 23 H -0.170 1.170 24 H -0.170 1.170 25 H -0.178 1.178 26 C -0.135 4.135 27 C -0.064 4.064 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.174 0.826 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.234 0.766 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.095 0.905 42 H 0.225 0.775 43 H 0.143 0.857 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.508 -1.502 6.637 6.824 hybrid contribution -0.053 -0.992 -2.010 2.242 sum 0.455 -2.493 4.627 5.276 Atomic orbital electron populations 1.23398 0.75420 1.04227 1.03065 1.86503 1.24063 1.32792 1.83638 1.22510 0.90090 0.81875 0.72102 1.90748 1.66993 1.35967 1.45581 1.28232 0.94198 1.27395 1.11127 1.70644 0.80516 0.82271 1.08394 1.93122 1.79632 1.65013 1.44477 1.27881 1.19530 1.12812 0.97333 1.20783 0.93832 0.94373 0.96602 1.21313 0.94345 1.01708 0.97385 1.18860 0.91465 0.95303 0.93654 1.18287 0.91388 0.93820 0.99817 1.19717 0.94069 0.94461 0.99218 1.20908 0.89495 0.87903 0.97855 1.86402 1.35457 1.32299 1.83382 1.21031 0.93841 0.98073 0.97752 1.21235 1.00358 0.93211 0.97801 1.21063 0.92989 0.99361 1.00568 1.19135 0.92919 0.93755 0.99944 1.24801 1.02115 0.96998 0.95404 1.86544 1.69413 1.46355 1.32088 0.85826 0.79881 0.79236 0.78724 1.17028 1.16958 1.17835 1.21251 0.94039 1.00654 0.97543 1.21080 0.94284 0.93442 0.97622 0.87689 0.91274 0.91571 0.85370 0.82615 0.84106 0.85030 0.91944 0.91999 0.76551 0.84325 0.85158 0.85603 0.90516 0.77504 0.85654 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.35 -0.43 10.57 -39.25 -0.41 -0.84 16 3 C 0.49 0.77 7.98 36.01 0.29 1.06 16 4 O -0.50 -2.10 15.61 -18.75 -0.29 -2.40 16 5 C -0.48 0.79 6.48 36.01 0.23 1.02 16 6 S 1.39 -0.99 12.68 -107.50 -1.36 -2.35 16 7 O -0.83 -4.82 16.89 -35.23 -0.60 -5.42 16 8 C -0.48 0.31 5.62 -39.52 -0.22 0.09 16 9 C -0.04 0.10 9.74 -39.63 -0.39 -0.29 16 10 C -0.13 0.16 8.06 -39.25 -0.32 -0.16 16 11 C 0.01 0.01 3.99 -104.90 -0.42 -0.41 16 12 C -0.03 -0.06 5.32 -104.90 -0.56 -0.61 16 13 C -0.07 -0.14 5.90 -104.29 -0.62 -0.76 16 14 C 0.12 0.07 6.29 36.01 0.23 0.29 16 15 O -0.57 -0.29 12.14 -35.23 -0.43 -0.72 16 16 C -0.09 -0.17 9.37 -39.63 -0.37 -0.54 16 17 C -0.11 -0.12 10.04 -39.52 -0.40 -0.51 16 18 C -0.12 -0.16 8.65 -39.63 -0.34 -0.50 16 19 C -0.06 -0.08 5.31 -104.30 -0.55 -0.64 16 20 C -0.08 0.04 2.10 36.00 0.08 0.12 16 21 O -0.54 -0.07 12.80 -35.23 -0.45 -0.52 16 22 Si 0.94 -0.89 25.51 -169.99 -4.34 -5.22 16 23 H -0.25 -0.10 6.73 56.52 0.38 0.28 16 24 H -0.25 0.10 7.11 56.52 0.40 0.51 16 25 H -0.25 0.25 7.11 56.52 0.40 0.65 16 26 C -0.12 -0.16 8.42 -39.25 -0.33 -0.49 16 27 C -0.05 -0.07 9.43 -39.63 -0.37 -0.44 16 28 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 29 H 0.07 -0.10 8.13 -51.93 -0.42 -0.53 16 30 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 31 H 0.13 -0.16 8.14 -51.92 -0.42 -0.58 16 32 H 0.16 -0.86 8.14 -51.92 -0.42 -1.28 16 33 H 0.14 -0.96 8.06 -52.49 -0.42 -1.38 16 34 H 0.13 -0.38 7.67 -52.49 -0.40 -0.79 16 35 H 0.06 0.01 6.72 -51.93 -0.35 -0.34 16 36 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 37 H 0.39 -1.42 9.12 45.56 0.42 -1.01 16 38 H 0.14 0.23 7.00 -52.48 -0.37 -0.14 16 39 H 0.13 -0.13 8.06 -52.48 -0.42 -0.56 16 40 H 0.13 0.00 4.89 -52.49 -0.26 -0.26 16 41 H 0.08 -0.17 5.68 -51.93 -0.30 -0.47 16 42 H 0.38 -1.54 8.74 45.56 0.40 -1.14 16 43 H 0.13 0.16 7.66 -52.49 -0.40 -0.24 16 44 H 0.13 0.32 7.44 -52.49 -0.39 -0.07 16 LS Contribution 380.24 15.07 5.73 5.73 Total: 0.00 -13.46 380.24 -8.99 -22.45 By element: Atomic # 1 Polarization: -5.13 SS G_CDS: -3.85 Total: -8.98 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.99 Total: -1.74 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -2.18 Total: -9.89 kcal Atomic # 14 Polarization: -0.89 SS G_CDS: -4.34 Total: -5.22 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -1.36 Total: -2.35 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -13.46 -8.99 -22.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13205920_11652898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.789 kcal (2) G-P(sol) polarization free energy of solvation -13.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds