Wall clock time and date at job start Mon Mar 8 2021 06:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99963 * 2 1 4 4 O 1.20829 * 119.99988 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00423 * 180.02562 * 3 2 1 6 6 S 1.81395 * 109.47766 * 180.02562 * 5 3 2 7 7 O 1.42105 * 109.46783 * 289.05702 * 6 5 3 8 8 C 1.76193 * 103.00259 * 179.97438 * 6 5 3 9 9 C 1.38321 * 119.87994 * 269.72489 * 8 6 5 10 10 C 1.38025 * 120.12097 * 179.72483 * 9 8 6 11 11 C 1.39333 * 119.87710 * 0.54763 * 10 9 8 12 12 C 1.48394 * 120.12065 * 179.75088 * 11 10 9 13 13 C 1.39320 * 120.11627 * 244.97729 * 12 11 10 14 14 C 1.50702 * 120.06505 * 359.97438 * 13 12 11 15 15 O 1.42895 * 109.47233 * 179.97438 * 14 13 12 16 16 C 1.38041 * 119.87361 * 179.97438 * 13 12 11 17 17 C 1.38299 * 120.12044 * 0.02613 * 16 13 12 18 18 C 1.38341 * 120.24594 * 359.95108 * 17 16 13 19 19 C 1.37996 * 120.12141 * 359.77016 * 18 17 16 20 20 C 1.50696 * 120.06418 * 180.27844 * 19 18 17 21 21 O 1.42904 * 109.47171 * 255.24833 * 20 19 18 22 22 Si 1.86294 * 109.47121 * 15.24759 * 20 19 18 23 23 H 1.48503 * 109.47465 * 300.00144 * 22 20 19 24 24 H 1.48499 * 109.47177 * 60.00131 * 22 20 19 25 25 H 1.48504 * 109.47346 * 180.02562 * 22 20 19 26 26 C 1.39345 * 119.75883 * 359.72747 * 11 10 9 27 27 C 1.38015 * 119.87726 * 0.02562 * 26 11 10 28 28 H 1.09004 * 109.46856 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47028 * 299.99908 * 1 2 3 30 30 H 1.09000 * 109.46974 * 60.00080 * 1 2 3 31 31 H 1.09000 * 109.46984 * 60.00013 * 5 3 2 32 32 H 1.09001 * 109.46992 * 300.00582 * 5 3 2 33 33 H 1.07999 * 119.93998 * 0.02562 * 9 8 6 34 34 H 1.07997 * 120.05621 * 180.27753 * 10 9 8 35 35 H 1.09000 * 109.46798 * 299.99379 * 14 13 12 36 36 H 1.08998 * 109.47134 * 59.99270 * 14 13 12 37 37 H 0.96699 * 113.99974 * 179.97438 * 15 14 13 38 38 H 1.08003 * 119.93881 * 180.02562 * 16 13 12 39 39 H 1.08008 * 119.87483 * 179.97438 * 17 16 13 40 40 H 1.08001 * 119.94028 * 180.02562 * 18 17 16 41 41 H 1.08997 * 109.47475 * 135.24952 * 20 19 18 42 42 H 0.96700 * 113.99985 * 179.97438 * 21 20 19 43 43 H 1.08000 * 120.05919 * 179.97438 * 26 11 10 44 44 H 1.07995 * 119.93925 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 16 4.0807 3.0145 0.0003 7 8 3.7949 3.5935 -1.2656 8 6 5.8393 2.9078 0.0003 9 6 6.5275 2.8712 1.1996 10 6 7.9049 2.7820 1.2054 11 6 8.6028 2.7402 0.0002 12 6 10.0840 2.6499 0.0001 13 6 10.8482 3.6977 -0.5089 14 6 10.1724 4.9260 -1.0616 15 8 11.1624 5.8496 -1.5184 16 6 12.2257 3.6085 -0.5060 17 6 12.8472 2.4816 0.0005 18 6 12.0932 1.4385 0.5075 19 6 10.7156 1.5194 0.5149 20 6 9.8957 0.3850 1.0733 21 8 9.3102 -0.3534 -0.0010 22 14 10.9925 -0.7398 2.0746 23 1 12.0663 -1.2858 1.2062 24 1 11.6010 0.0275 3.1909 25 1 10.1847 -1.8580 2.6244 26 6 7.9048 2.7832 -1.2051 27 6 6.5272 2.8673 -1.1992 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9557 0.7811 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 5.9858 2.9077 2.1332 34 1 8.4408 2.7490 2.1424 35 1 9.5278 4.6427 -1.8937 36 1 9.5728 5.3934 -0.2804 37 1 10.7983 6.6655 -1.8883 38 1 12.8192 4.4203 -0.8999 39 1 13.9253 2.4159 0.0004 40 1 12.5837 0.5609 0.9022 41 1 9.1076 0.7857 1.7107 42 1 8.7675 -1.1008 0.2853 43 1 8.4409 2.7516 -2.1421 44 1 5.9852 2.9002 -2.1327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13205920_11652898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:56:46 Heat of formation + Delta-G solvation = -153.351462 kcal Electronic energy + Delta-G solvation = -30200.648222 eV Core-core repulsion = 25869.314872 eV Total energy + Delta-G solvation = -4331.333350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54863 -41.41288 -39.50536 -38.11512 -37.72391 -37.24155 -37.08229 -34.07257 -33.13572 -31.98166 -31.76724 -30.46652 -28.19260 -27.29344 -26.87306 -24.38651 -23.68263 -22.55986 -22.03109 -21.61464 -19.37280 -18.87621 -18.56761 -18.48392 -18.18846 -17.77780 -17.69387 -17.28162 -16.68147 -16.53716 -16.29154 -15.95899 -15.75390 -15.69778 -15.44242 -15.15596 -15.09263 -14.85961 -14.55415 -14.44109 -14.38471 -14.00903 -13.82893 -13.62661 -13.48827 -13.23640 -13.14105 -13.04646 -12.82316 -12.21869 -12.17816 -12.10290 -11.93645 -11.90075 -11.87740 -11.73709 -11.45517 -11.35932 -10.36315 -10.32495 -9.94908 -9.76883 -9.67921 -9.42071 -0.40283 0.17581 0.20536 0.37321 0.63955 0.97319 1.14635 1.45923 1.50811 1.59514 1.79771 1.90934 2.46888 2.59118 2.82192 3.10546 3.42228 3.50754 3.62930 3.80379 3.84321 3.90765 3.97809 4.01467 4.04123 4.24057 4.24721 4.25968 4.30305 4.37506 4.38361 4.40109 4.45969 4.53982 4.60748 4.69343 4.72921 4.75149 4.92727 5.00237 5.19582 5.23498 5.24533 5.29948 5.39928 5.42014 5.51400 5.84664 5.89719 6.47958 6.75269 6.80306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.359 6.359 3 C 0.487 3.513 4 O -0.538 6.538 5 C -0.472 4.472 6 S 1.433 4.567 7 O -0.901 6.901 8 C -0.477 4.477 9 C -0.020 4.020 10 C -0.130 4.130 11 C 0.001 3.999 12 C -0.041 4.041 13 C -0.089 4.089 14 C 0.119 3.881 15 O -0.583 6.583 16 C -0.104 4.104 17 C -0.113 4.113 18 C -0.135 4.135 19 C -0.068 4.068 20 C -0.083 4.083 21 O -0.558 6.558 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.253 1.253 25 H -0.249 1.249 26 C -0.128 4.128 27 C -0.066 4.066 28 H 0.130 0.870 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.205 0.795 33 H 0.194 0.806 34 H 0.155 0.845 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.135 0.865 39 H 0.147 0.853 40 H 0.135 0.865 41 H 0.099 0.901 42 H 0.395 0.605 43 H 0.112 0.888 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.232 -3.048 8.844 9.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.275 6.275 3 C 0.331 3.669 4 O -0.428 6.428 5 C -0.604 4.604 6 S 1.628 4.372 7 O -0.897 6.897 8 C -0.574 4.574 9 C -0.038 4.038 10 C -0.148 4.148 11 C 0.001 3.999 12 C -0.041 4.041 13 C -0.089 4.089 14 C 0.042 3.958 15 O -0.393 6.393 16 C -0.122 4.122 17 C -0.131 4.131 18 C -0.152 4.152 19 C -0.068 4.068 20 C -0.193 4.193 21 O -0.367 6.367 22 Si 0.796 3.204 23 H -0.197 1.197 24 H -0.177 1.177 25 H -0.172 1.172 26 C -0.147 4.147 27 C -0.085 4.085 28 H 0.148 0.852 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.222 0.778 33 H 0.211 0.789 34 H 0.173 0.827 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.253 0.747 38 H 0.153 0.847 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.116 0.884 42 H 0.245 0.755 43 H 0.130 0.870 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.169 -2.558 9.154 9.506 hybrid contribution 0.050 -0.731 -2.787 2.882 sum 0.219 -3.290 6.366 7.169 Atomic orbital electron populations 1.23624 0.74513 1.05868 1.02884 1.86501 1.25114 1.32552 1.83331 1.23055 0.91182 0.81528 0.71116 1.90741 1.67964 1.36943 1.47197 1.28204 0.92260 1.26527 1.13401 1.69729 0.79603 0.81968 1.05868 1.93017 1.81264 1.68206 1.47202 1.27819 1.19087 1.13053 0.97463 1.21350 0.93463 0.91410 0.97606 1.21667 0.95045 1.00739 0.97382 1.18900 0.91008 0.95812 0.94175 1.18446 0.92025 0.93818 0.99824 1.19969 0.94339 0.95186 0.99435 1.20872 0.89326 0.87720 0.97929 1.86365 1.36062 1.33243 1.83582 1.21115 0.94080 0.98480 0.98524 1.21470 1.01355 0.92905 0.97357 1.21287 0.93349 0.99738 1.00852 1.19463 0.93296 0.94331 0.99714 1.24871 1.02704 0.96522 0.95219 1.86506 1.69939 1.47328 1.32918 0.85391 0.78749 0.78721 0.77566 1.19695 1.17676 1.17245 1.21139 0.93989 1.01968 0.97645 1.20991 0.94402 0.95243 0.97851 0.85183 0.90717 0.92576 0.85476 0.77833 0.78918 0.82692 0.92154 0.91335 0.74705 0.84672 0.83512 0.84733 0.88376 0.75483 0.86993 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.61 10.57 -51.40 -0.54 -1.15 16 3 C 0.49 1.34 7.98 71.24 0.57 1.90 16 4 O -0.54 -4.80 15.61 21.95 0.34 -4.45 16 5 C -0.47 2.20 6.48 71.24 0.46 2.66 16 6 S 1.43 -2.42 12.68 -56.49 -0.72 -3.13 16 7 O -0.90 -12.28 16.89 -148.98 -2.52 -14.80 16 8 C -0.48 1.02 5.62 22.31 0.13 1.14 16 9 C -0.02 0.16 9.74 22.24 0.22 0.38 16 10 C -0.13 0.62 8.06 22.48 0.18 0.80 16 11 C 0.00 0.00 3.99 -20.04 -0.08 -0.08 16 12 C -0.04 -0.15 5.32 -20.04 -0.11 -0.26 16 13 C -0.09 -0.44 5.90 -19.65 -0.12 -0.56 16 14 C 0.12 0.29 6.29 71.24 0.45 0.73 16 15 O -0.58 -1.23 12.14 -148.98 -1.81 -3.04 16 16 C -0.10 -0.52 9.37 22.24 0.21 -0.32 16 17 C -0.11 -0.33 10.04 22.31 0.22 -0.11 16 18 C -0.13 -0.40 8.65 22.24 0.19 -0.21 16 19 C -0.07 -0.20 5.31 -19.65 -0.10 -0.30 16 20 C -0.08 0.18 2.10 71.23 0.15 0.33 16 21 O -0.56 0.26 12.80 -148.98 -1.91 -1.65 16 22 Si 0.97 -2.74 25.51 68.60 1.75 -0.99 16 23 H -0.27 -0.30 6.73 99.48 0.67 0.37 16 24 H -0.25 0.47 7.11 99.48 0.71 1.17 16 25 H -0.25 0.95 7.11 99.48 0.71 1.66 16 26 C -0.13 -0.52 8.42 22.48 0.19 -0.34 16 27 C -0.07 -0.28 9.43 22.24 0.21 -0.07 16 28 H 0.13 -1.00 8.14 -2.38 -0.02 -1.02 16 29 H 0.07 -0.24 8.13 -2.39 -0.02 -0.26 16 30 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 31 H 0.13 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.20 -3.02 8.14 -2.39 -0.02 -3.04 16 33 H 0.19 -3.66 8.06 -2.91 -0.02 -3.69 16 34 H 0.16 -1.45 7.67 -2.91 -0.02 -1.48 16 35 H 0.06 0.14 6.72 -2.39 -0.02 0.12 16 36 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.40 -2.60 9.12 -74.06 -0.68 -3.27 16 38 H 0.14 0.66 7.00 -2.91 -0.02 0.64 16 39 H 0.15 -0.24 8.06 -2.91 -0.02 -0.26 16 40 H 0.14 0.05 4.89 -2.91 -0.01 0.03 16 41 H 0.10 -0.68 5.68 -2.39 -0.01 -0.70 16 42 H 0.40 -3.72 8.74 -74.06 -0.65 -4.37 16 43 H 0.11 0.62 7.66 -2.91 -0.02 0.60 16 44 H 0.11 0.87 7.44 -2.91 -0.02 0.85 16 Total: 0.00 -34.47 380.24 -0.97 -35.44 By element: Atomic # 1 Polarization: -13.55 SS G_CDS: 0.47 Total: -13.08 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 3.96 Total: 6.86 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -6.43 Total: -25.10 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 1.75 Total: -0.99 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -0.72 Total: -3.13 kcal Total: -34.47 -0.97 -35.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13205920_11652898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.913 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds