Wall clock time and date at job start Mon Mar 8 2021 06:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35253 * 116.99811 * 2 1 4 4 O 1.21775 * 119.99820 * 0.02562 * 3 2 1 5 5 C 1.40015 * 119.99890 * 179.97438 * 3 2 1 6 6 S 1.55354 * 119.99723 * 179.97438 * 5 3 2 7 7 O 1.52203 * 102.99887 * 73.13726 * 6 5 3 8 8 C 1.76208 * 102.99815 * 180.02562 * 6 5 3 9 9 C 1.38318 * 119.87885 * 90.00431 * 8 6 5 10 10 C 1.38018 * 120.12397 * 180.02562 * 9 8 6 11 11 C 1.39340 * 119.87458 * 359.97438 * 10 9 8 12 12 C 1.48389 * 120.12100 * 179.97438 * 11 10 9 13 13 C 1.39320 * 120.11633 * 64.99810 * 12 11 10 14 14 C 1.50699 * 120.06324 * 359.97438 * 13 12 11 15 15 O 1.42905 * 109.46972 * 180.02562 * 14 13 12 16 16 C 1.38048 * 119.87312 * 180.25515 * 13 12 11 17 17 C 1.38298 * 120.12091 * 359.44626 * 16 13 12 18 18 C 1.38345 * 120.24173 * 0.55604 * 17 16 13 19 19 C 1.37994 * 120.12325 * 359.72223 * 18 17 16 20 20 C 1.50704 * 120.06063 * 180.02562 * 19 18 17 21 21 O 1.42897 * 109.47265 * 254.97590 * 20 19 18 22 22 Si 1.86299 * 109.47008 * 14.97885 * 20 19 18 23 23 H 1.48504 * 109.47150 * 60.00277 * 22 20 19 24 24 H 1.48499 * 109.46987 * 179.97438 * 22 20 19 25 25 H 1.48487 * 109.47206 * 299.99777 * 22 20 19 26 26 C 1.39340 * 119.75754 * 0.24700 * 11 10 9 27 27 C 1.38011 * 119.87678 * 359.54251 * 26 11 10 28 28 H 1.09005 * 109.47159 * 60.00326 * 1 2 3 29 29 H 1.09004 * 109.46693 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47601 * 299.99785 * 1 2 3 31 31 H 1.07998 * 120.00247 * 0.02562 * 5 3 2 32 32 H 1.08005 * 119.93557 * 359.97438 * 9 8 6 33 33 H 1.07994 * 120.06438 * 179.97438 * 10 9 8 34 34 H 1.09000 * 109.47247 * 60.00131 * 14 13 12 35 35 H 1.09001 * 109.47358 * 299.99557 * 14 13 12 36 36 H 0.96696 * 114.00036 * 179.97438 * 15 14 13 37 37 H 1.08005 * 119.93635 * 179.72276 * 16 13 12 38 38 H 1.08001 * 119.87789 * 180.25335 * 17 16 13 39 39 H 1.08004 * 119.93831 * 179.69741 * 18 17 16 40 40 H 1.09005 * 109.46712 * 134.98090 * 20 19 18 41 41 H 0.96703 * 114.00099 * 60.00138 * 21 20 19 42 42 H 1.08000 * 120.05716 * 179.72445 * 26 11 10 43 43 H 1.08010 * 119.93853 * 180.20565 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0429 1.2051 0.0000 4 8 1.3796 2.2264 0.0005 5 6 3.4412 1.2784 0.0005 6 16 4.1464 2.6627 -0.0001 7 8 3.9179 3.1639 1.4188 8 6 5.8561 2.2365 0.0002 9 6 6.5248 2.0693 -1.1991 10 6 7.8638 1.7350 -1.2048 11 6 8.5422 1.5663 0.0006 12 6 9.9818 1.2062 0.0008 13 6 10.9249 2.0957 -0.5093 14 6 10.4853 3.4264 -1.0635 15 8 11.6277 4.1521 -1.5224 16 6 12.2623 1.7535 -0.5115 17 6 12.6676 0.5350 0.0020 18 6 11.7353 -0.3521 0.5097 19 6 10.3953 -0.0226 0.5116 20 6 9.3809 -0.9897 1.0656 21 8 8.6712 -1.6047 -0.0115 22 14 10.2522 -2.2997 2.0634 23 1 10.9896 -1.6606 3.1828 24 1 9.2526 -3.2523 2.6098 25 1 11.2087 -3.0300 1.1935 26 6 7.8625 1.7313 1.2057 27 6 6.5246 2.0700 1.1996 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0294 0.3727 0.0005 32 1 5.9978 2.1999 -2.1327 33 1 8.3848 1.6043 -2.1417 34 1 9.9817 3.9966 -0.2829 35 1 9.7997 3.2650 -1.8954 36 1 11.4191 5.0204 -1.8933 37 1 12.9938 2.4404 -0.9108 38 1 13.7154 0.2729 0.0021 39 1 12.0568 -1.3044 0.9050 40 1 8.6787 -0.4536 1.7041 41 1 9.2345 -2.1003 -0.6215 42 1 8.3825 1.5974 2.1428 43 1 5.9976 2.2014 2.1332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13205920_11652898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:57:00 Heat of formation + Delta-G solvation = -200.639089 kcal Electronic energy + Delta-G solvation = -29960.524425 eV Core-core repulsion = 25640.796269 eV Total energy + Delta-G solvation = -4319.728156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.095 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.32814 -38.42335 -38.03694 -37.25672 -36.27402 -34.63846 -32.81042 -32.03751 -31.76003 -30.34067 -29.13123 -28.48862 -26.29192 -25.92953 -25.79845 -23.05421 -22.05125 -20.85779 -20.77297 -19.88585 -17.71428 -17.55171 -17.12132 -16.38558 -15.82782 -15.76343 -15.46192 -15.21384 -14.97817 -14.84794 -14.82381 -14.59796 -14.39040 -14.11396 -14.07538 -13.76382 -13.33063 -12.92740 -12.63978 -12.62868 -12.45910 -12.13763 -11.99276 -11.85155 -11.82042 -11.40873 -11.28334 -11.06890 -10.99833 -10.71955 -10.58234 -10.50077 -10.36993 -10.20092 -9.46632 -9.32266 -8.99024 -8.81705 -8.61383 -8.40407 -8.31053 -8.11372 -7.08810 -5.71639 1.01989 1.13696 1.72992 1.92629 1.95872 2.14827 2.28489 2.68214 3.49610 3.62090 3.95518 4.17749 4.46545 4.58699 4.59609 4.65706 4.75374 4.80425 4.85699 5.21077 5.24067 5.33252 5.36633 5.38475 5.42810 5.44187 5.58423 5.74162 5.86886 5.91455 6.02996 6.04881 6.08961 6.18963 6.26681 6.28976 6.31503 6.36890 6.45071 6.63319 6.70112 6.86969 6.92809 7.17554 7.40781 7.49196 7.52512 7.58431 7.70997 8.37996 9.92357 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.011826 B = 0.003119 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.090123 B = 8976.466685 C =10680.713784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.383 6.383 3 C 0.538 3.462 4 O -0.622 6.622 5 C -1.030 5.030 6 S 1.461 4.539 7 O -0.930 6.930 8 C -0.414 4.414 9 C -0.054 4.054 10 C -0.124 4.124 11 C -0.039 4.039 12 C -0.006 4.006 13 C -0.078 4.078 14 C 0.116 3.884 15 O -0.573 6.573 16 C -0.092 4.092 17 C -0.120 4.120 18 C -0.129 4.129 19 C -0.106 4.106 20 C -0.084 4.084 21 O -0.525 6.525 22 Si 0.951 3.049 23 H -0.250 1.250 24 H -0.254 1.254 25 H -0.253 1.253 26 C -0.128 4.128 27 C -0.052 4.052 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.383 0.617 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.368 0.632 42 H 0.113 0.887 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.764 -2.240 -5.992 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.302 6.302 3 C 0.403 3.597 4 O -0.527 6.527 5 C -1.157 5.157 6 S 1.663 4.337 7 O -0.926 6.926 8 C -0.506 4.506 9 C -0.073 4.073 10 C -0.143 4.143 11 C -0.039 4.039 12 C -0.007 4.007 13 C -0.078 4.078 14 C 0.039 3.961 15 O -0.379 6.379 16 C -0.110 4.110 17 C -0.138 4.138 18 C -0.147 4.147 19 C -0.107 4.107 20 C -0.195 4.195 21 O -0.328 6.328 22 Si 0.774 3.226 23 H -0.174 1.174 24 H -0.178 1.178 25 H -0.177 1.177 26 C -0.147 4.147 27 C -0.071 4.071 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.231 0.769 37 H 0.152 0.848 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.214 0.786 42 H 0.131 0.869 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.400 -2.071 -4.960 20.131 hybrid contribution 0.383 -1.703 0.939 1.982 sum 19.783 -3.774 -4.021 20.537 Atomic orbital electron populations 1.22387 0.81319 1.00588 1.00768 1.86279 1.19738 1.36559 1.87659 1.17883 0.87878 0.79586 0.74325 1.90670 1.67664 1.35000 1.59392 1.26220 0.99504 1.19330 1.70694 1.66540 0.75777 0.85172 1.06254 1.94463 1.82459 1.79070 1.36639 1.28719 1.21907 1.04411 0.95576 1.20769 0.93251 0.96002 0.97252 1.21046 0.95039 1.01921 0.96258 1.18541 0.90986 1.00365 0.93990 1.18448 0.92192 0.92722 0.97293 1.19767 0.93445 0.95043 0.99574 1.20945 0.87174 0.89816 0.98207 1.86371 1.33766 1.34465 1.83344 1.20953 0.95480 0.96308 0.98271 1.21103 0.99322 0.94189 0.99182 1.21022 0.92597 0.99892 1.01157 1.20274 0.94100 0.95520 1.00771 1.25106 0.98980 1.00062 0.95335 1.86665 1.35949 1.70254 1.39967 0.85745 0.78758 0.78672 0.79453 1.17371 1.17765 1.17737 1.21132 0.94952 1.02242 0.96400 1.21141 0.93301 0.93819 0.98854 0.93854 0.90686 0.94011 0.87331 0.85184 0.86629 0.91795 0.91461 0.76909 0.84807 0.85807 0.86060 0.86389 0.78572 0.86912 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.98 10.45 101.05 1.06 2.04 16 2 O -0.38 -10.63 10.47 -42.04 -0.44 -11.07 16 3 C 0.54 16.51 7.63 31.40 0.24 16.75 16 4 O -0.62 -19.81 16.06 -19.47 -0.31 -20.12 16 5 C -1.03 -30.27 8.93 31.40 0.28 -29.99 16 6 S 1.46 37.08 12.78 -107.50 -1.37 35.71 16 7 O -0.93 -29.77 17.06 -35.23 -0.60 -30.37 16 8 C -0.41 -8.93 5.35 -39.52 -0.21 -9.14 16 9 C -0.05 -0.94 9.74 -39.63 -0.39 -1.32 16 10 C -0.12 -1.94 8.42 -39.25 -0.33 -2.27 16 11 C -0.04 -0.62 3.98 -104.90 -0.42 -1.04 16 12 C -0.01 -0.09 5.32 -104.90 -0.56 -0.65 16 13 C -0.08 -0.99 5.90 -104.29 -0.62 -1.60 16 14 C 0.12 1.28 6.29 36.01 0.23 1.51 16 15 O -0.57 -5.52 12.14 -35.23 -0.43 -5.94 16 16 C -0.09 -1.05 9.37 -39.63 -0.37 -1.42 16 17 C -0.12 -1.23 10.04 -39.52 -0.40 -1.62 16 18 C -0.13 -1.40 8.65 -39.63 -0.34 -1.74 16 19 C -0.11 -1.36 5.28 -104.29 -0.55 -1.91 16 20 C -0.08 -1.09 2.11 36.01 0.08 -1.01 16 21 O -0.52 -7.28 12.83 -35.23 -0.45 -7.73 16 22 Si 0.95 9.94 25.50 -169.99 -4.33 5.61 16 23 H -0.25 -2.63 7.11 56.52 0.40 -2.23 16 24 H -0.25 -3.03 7.11 56.52 0.40 -2.63 16 25 H -0.25 -2.31 6.73 56.52 0.38 -1.93 16 26 C -0.13 -2.30 8.06 -39.25 -0.32 -2.62 16 27 C -0.05 -1.13 9.45 -39.63 -0.37 -1.51 16 28 H 0.04 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.04 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.11 3.28 7.87 -45.46 -0.36 2.92 16 32 H 0.13 1.86 8.06 -52.48 -0.42 1.43 16 33 H 0.12 1.52 7.66 -52.49 -0.40 1.12 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.71 6.72 -51.93 -0.35 0.36 16 36 H 0.38 1.95 9.12 45.56 0.42 2.36 16 37 H 0.13 1.42 7.00 -52.48 -0.37 1.05 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.09 4.89 -52.48 -0.26 0.84 16 40 H 0.12 1.71 5.68 -51.93 -0.30 1.41 16 41 H 0.37 3.51 8.70 45.56 0.40 3.90 16 42 H 0.11 1.79 7.67 -52.49 -0.40 1.39 16 43 H 0.13 3.09 7.22 -52.48 -0.38 2.71 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -41.83 373.94 -8.65 -50.48 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -3.35 Total: 15.36 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: -2.99 Total: -37.55 kcal Atomic # 8 Polarization: -73.01 SS G_CDS: -2.23 Total: -75.24 kcal Atomic # 14 Polarization: 9.94 SS G_CDS: -4.33 Total: 5.61 kcal Atomic # 16 Polarization: 37.08 SS G_CDS: -1.37 Total: 35.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -41.83 -8.65 -50.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13205920_11652898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.162 kcal (2) G-P(sol) polarization free energy of solvation -41.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds