Wall clock time and date at job start Mon Mar 8 2021 06:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35253 * 116.99811 * 2 1 4 4 O 1.21775 * 119.99820 * 0.02562 * 3 2 1 5 5 C 1.40015 * 119.99890 * 179.97438 * 3 2 1 6 6 S 1.55354 * 119.99723 * 179.97438 * 5 3 2 7 7 O 1.52203 * 102.99887 * 73.13726 * 6 5 3 8 8 C 1.76208 * 102.99815 * 180.02562 * 6 5 3 9 9 C 1.38318 * 119.87885 * 90.00431 * 8 6 5 10 10 C 1.38018 * 120.12397 * 180.02562 * 9 8 6 11 11 C 1.39340 * 119.87458 * 359.97438 * 10 9 8 12 12 C 1.48389 * 120.12100 * 179.97438 * 11 10 9 13 13 C 1.39320 * 120.11633 * 64.99810 * 12 11 10 14 14 C 1.50699 * 120.06324 * 359.97438 * 13 12 11 15 15 O 1.42905 * 109.46972 * 180.02562 * 14 13 12 16 16 C 1.38048 * 119.87312 * 180.25515 * 13 12 11 17 17 C 1.38298 * 120.12091 * 359.44626 * 16 13 12 18 18 C 1.38345 * 120.24173 * 0.55604 * 17 16 13 19 19 C 1.37994 * 120.12325 * 359.72223 * 18 17 16 20 20 C 1.50704 * 120.06063 * 180.02562 * 19 18 17 21 21 O 1.42897 * 109.47265 * 254.97590 * 20 19 18 22 22 Si 1.86299 * 109.47008 * 14.97885 * 20 19 18 23 23 H 1.48504 * 109.47150 * 60.00277 * 22 20 19 24 24 H 1.48499 * 109.46987 * 179.97438 * 22 20 19 25 25 H 1.48487 * 109.47206 * 299.99777 * 22 20 19 26 26 C 1.39340 * 119.75754 * 0.24700 * 11 10 9 27 27 C 1.38011 * 119.87678 * 359.54251 * 26 11 10 28 28 H 1.09005 * 109.47159 * 60.00326 * 1 2 3 29 29 H 1.09004 * 109.46693 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47601 * 299.99785 * 1 2 3 31 31 H 1.07998 * 120.00247 * 0.02562 * 5 3 2 32 32 H 1.08005 * 119.93557 * 359.97438 * 9 8 6 33 33 H 1.07994 * 120.06438 * 179.97438 * 10 9 8 34 34 H 1.09000 * 109.47247 * 60.00131 * 14 13 12 35 35 H 1.09001 * 109.47358 * 299.99557 * 14 13 12 36 36 H 0.96696 * 114.00036 * 179.97438 * 15 14 13 37 37 H 1.08005 * 119.93635 * 179.72276 * 16 13 12 38 38 H 1.08001 * 119.87789 * 180.25335 * 17 16 13 39 39 H 1.08004 * 119.93831 * 179.69741 * 18 17 16 40 40 H 1.09005 * 109.46712 * 134.98090 * 20 19 18 41 41 H 0.96703 * 114.00099 * 60.00138 * 21 20 19 42 42 H 1.08000 * 120.05716 * 179.72445 * 26 11 10 43 43 H 1.08010 * 119.93853 * 180.20565 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0429 1.2051 0.0000 4 8 1.3796 2.2264 0.0005 5 6 3.4412 1.2784 0.0005 6 16 4.1464 2.6627 -0.0001 7 8 3.9179 3.1639 1.4188 8 6 5.8561 2.2365 0.0002 9 6 6.5248 2.0693 -1.1991 10 6 7.8638 1.7350 -1.2048 11 6 8.5422 1.5663 0.0006 12 6 9.9818 1.2062 0.0008 13 6 10.9249 2.0957 -0.5093 14 6 10.4853 3.4264 -1.0635 15 8 11.6277 4.1521 -1.5224 16 6 12.2623 1.7535 -0.5115 17 6 12.6676 0.5350 0.0020 18 6 11.7353 -0.3521 0.5097 19 6 10.3953 -0.0226 0.5116 20 6 9.3809 -0.9897 1.0656 21 8 8.6712 -1.6047 -0.0115 22 14 10.2522 -2.2997 2.0634 23 1 10.9896 -1.6606 3.1828 24 1 9.2526 -3.2523 2.6098 25 1 11.2087 -3.0300 1.1935 26 6 7.8625 1.7313 1.2057 27 6 6.5246 2.0700 1.1996 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0294 0.3727 0.0005 32 1 5.9978 2.1999 -2.1327 33 1 8.3848 1.6043 -2.1417 34 1 9.9817 3.9966 -0.2829 35 1 9.7997 3.2650 -1.8954 36 1 11.4191 5.0204 -1.8933 37 1 12.9938 2.4404 -0.9108 38 1 13.7154 0.2729 0.0021 39 1 12.0568 -1.3044 0.9050 40 1 8.6787 -0.4536 1.7041 41 1 9.2345 -2.1003 -0.6215 42 1 8.3825 1.5974 2.1428 43 1 5.9976 2.2014 2.1332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13205920_11652898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:56:59 Heat of formation + Delta-G solvation = -234.901806 kcal Electronic energy + Delta-G solvation = -29962.010168 eV Core-core repulsion = 25640.796269 eV Total energy + Delta-G solvation = -4321.213899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.095 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35198 -40.67960 -39.37379 -38.11731 -37.14130 -36.91493 -34.15808 -33.83552 -32.95421 -31.82657 -30.86565 -30.21665 -27.77892 -27.15604 -26.85861 -24.27115 -23.50951 -22.27233 -21.83208 -21.66167 -19.02464 -18.58690 -18.40095 -18.06602 -17.50072 -16.96565 -16.90192 -16.63569 -16.48668 -16.35995 -15.94505 -15.83613 -15.72319 -15.53578 -15.03120 -14.82331 -14.51775 -14.46173 -14.35458 -14.11013 -13.87947 -13.67648 -13.42849 -13.26620 -12.90903 -12.72557 -12.64736 -12.44293 -12.21569 -12.10687 -12.02709 -11.89930 -11.47047 -11.45850 -11.23556 -11.01843 -10.58126 -10.41953 -10.12778 -9.86008 -9.69541 -9.46075 -9.25499 -8.00642 -0.11230 0.26328 0.42605 0.47584 1.08327 1.35911 1.47345 1.69372 1.86708 2.21900 2.57035 2.69268 2.82308 3.20786 3.28734 3.52605 3.61281 3.71847 3.86184 3.94775 4.03981 4.09314 4.12386 4.33848 4.37000 4.39500 4.41653 4.49392 4.53246 4.54490 4.55377 4.67744 4.71077 4.83647 4.85925 5.02354 5.10284 5.22225 5.29875 5.39008 5.41072 5.45919 5.48938 5.56620 5.61323 5.94873 6.03217 6.07527 6.74930 6.88244 7.57250 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.011826 B = 0.003119 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.090123 B = 8976.466685 C =10680.713784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.397 6.397 3 C 0.519 3.481 4 O -0.642 6.642 5 C -1.041 5.041 6 S 1.501 4.499 7 O -1.004 7.004 8 C -0.440 4.440 9 C -0.045 4.045 10 C -0.116 4.116 11 C -0.014 4.014 12 C -0.035 4.035 13 C -0.084 4.084 14 C 0.117 3.883 15 O -0.579 6.579 16 C -0.098 4.098 17 C -0.107 4.107 18 C -0.129 4.129 19 C -0.110 4.110 20 C -0.104 4.104 21 O -0.551 6.551 22 Si 0.994 3.006 23 H -0.249 1.249 24 H -0.284 1.284 25 H -0.218 1.218 26 C -0.130 4.130 27 C -0.080 4.080 28 H 0.053 0.947 29 H 0.126 0.874 30 H 0.035 0.965 31 H 0.092 0.908 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.386 0.614 42 H 0.125 0.875 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.669 -3.710 -8.134 25.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.316 6.316 3 C 0.385 3.615 4 O -0.550 6.550 5 C -1.167 5.167 6 S 1.706 4.294 7 O -1.000 7.000 8 C -0.537 4.537 9 C -0.064 4.064 10 C -0.134 4.134 11 C -0.014 4.014 12 C -0.036 4.036 13 C -0.084 4.084 14 C 0.039 3.961 15 O -0.388 6.388 16 C -0.116 4.116 17 C -0.125 4.125 18 C -0.146 4.146 19 C -0.110 4.110 20 C -0.212 4.212 21 O -0.357 6.357 22 Si 0.815 3.185 23 H -0.173 1.173 24 H -0.210 1.210 25 H -0.141 1.141 26 C -0.149 4.149 27 C -0.100 4.100 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.053 0.947 31 H 0.110 0.890 32 H 0.184 0.816 33 H 0.172 0.828 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.253 0.747 37 H 0.161 0.839 38 H 0.175 0.825 39 H 0.163 0.837 40 H 0.108 0.892 41 H 0.235 0.765 42 H 0.143 0.857 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 23.258 -3.528 -7.135 24.582 hybrid contribution -0.640 -1.337 1.541 2.138 sum 22.618 -4.864 -5.594 23.802 Atomic orbital electron populations 1.22841 0.78054 1.04084 1.01007 1.86219 1.23129 1.34953 1.87318 1.18194 0.88539 0.80242 0.74492 1.90632 1.68155 1.35790 1.60395 1.26706 0.99709 1.19911 1.70394 1.65402 0.77030 0.83402 1.03573 1.94360 1.85282 1.80544 1.39848 1.27961 1.19210 1.09011 0.97525 1.21163 0.94231 0.94213 0.96814 1.21457 0.94193 1.00035 0.97735 1.18817 0.92416 0.97076 0.93125 1.18375 0.90783 0.94226 1.00170 1.19935 0.93875 0.95312 0.99272 1.20861 0.87643 0.89394 0.98158 1.86322 1.33248 1.35817 1.83436 1.21153 0.94979 0.97086 0.98338 1.21514 1.00899 0.93121 0.96924 1.21261 0.91564 1.01032 1.00788 1.20333 0.95046 0.95026 1.00625 1.25422 0.98823 1.01555 0.95447 1.86609 1.37532 1.70783 1.40813 0.85140 0.77939 0.76583 0.78887 1.17256 1.21021 1.14076 1.21195 0.93486 1.01959 0.98299 1.20939 0.95114 0.96477 0.97423 0.92778 0.85568 0.94665 0.88975 0.81634 0.82810 0.92837 0.90701 0.74670 0.83867 0.82465 0.83737 0.89204 0.76505 0.85682 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.48 10.45 113.37 1.19 2.66 16 2 O -0.40 -22.27 10.47 -61.85 -0.65 -22.92 16 3 C 0.52 32.78 7.63 68.25 0.52 33.30 16 4 O -0.64 -42.10 16.06 18.92 0.30 -41.79 16 5 C -1.04 -63.71 8.93 68.25 0.61 -63.10 16 6 S 1.50 79.97 12.78 -56.49 -0.72 79.25 16 7 O -1.00 -68.46 17.06 -148.98 -2.54 -71.00 16 8 C -0.44 -19.69 5.35 22.31 0.12 -19.57 16 9 C -0.05 -1.53 9.74 22.24 0.22 -1.31 16 10 C -0.12 -3.37 8.42 22.48 0.19 -3.18 16 11 C -0.01 -0.44 3.98 -20.04 -0.08 -0.52 16 12 C -0.04 -0.91 5.32 -20.04 -0.11 -1.02 16 13 C -0.08 -1.88 5.90 -19.65 -0.12 -2.00 16 14 C 0.12 2.30 6.29 71.24 0.45 2.75 16 15 O -0.58 -9.42 12.14 -148.98 -1.81 -11.23 16 16 C -0.10 -1.85 9.37 22.24 0.21 -1.64 16 17 C -0.11 -1.67 10.04 22.31 0.22 -1.45 16 18 C -0.13 -2.26 8.65 22.24 0.19 -2.06 16 19 C -0.11 -2.54 5.28 -19.65 -0.10 -2.64 16 20 C -0.10 -2.59 2.11 71.24 0.15 -2.44 16 21 O -0.55 -14.69 12.83 -148.98 -1.91 -16.60 16 22 Si 0.99 18.43 25.50 68.60 1.75 20.18 16 23 H -0.25 -4.55 7.11 99.48 0.71 -3.84 16 24 H -0.28 -6.67 7.11 99.48 0.71 -5.96 16 25 H -0.22 -2.86 6.73 99.48 0.67 -2.19 16 26 C -0.13 -4.83 8.06 22.48 0.18 -4.65 16 27 C -0.08 -3.71 9.45 22.24 0.21 -3.50 16 28 H 0.05 2.17 8.13 -2.38 -0.02 2.15 16 29 H 0.13 4.02 8.14 -2.38 -0.02 4.00 16 30 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.09 5.80 7.87 -7.38 -0.06 5.74 16 32 H 0.17 4.32 8.06 -2.91 -0.02 4.30 16 33 H 0.15 3.39 7.66 -2.91 -0.02 3.37 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.33 6.72 -2.39 -0.02 1.32 16 36 H 0.40 2.95 9.12 -74.06 -0.68 2.27 16 37 H 0.14 2.45 7.00 -2.91 -0.02 2.43 16 38 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.15 1.84 4.89 -2.91 -0.01 1.82 16 40 H 0.09 2.68 5.68 -2.38 -0.01 2.66 16 41 H 0.39 6.55 8.70 -74.06 -0.64 5.91 16 42 H 0.13 4.18 7.67 -2.91 -0.02 4.16 16 43 H 0.09 4.69 7.22 -2.91 -0.02 4.67 16 Total: -1.00 -96.53 373.94 -1.08 -97.61 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.45 Total: 36.87 kcal Atomic # 6 Polarization: -74.42 SS G_CDS: 4.05 Total: -70.37 kcal Atomic # 8 Polarization: -156.93 SS G_CDS: -6.61 Total: -163.53 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: 1.75 Total: 20.18 kcal Atomic # 16 Polarization: 79.97 SS G_CDS: -0.72 Total: 79.25 kcal Total: -96.53 -1.08 -97.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13205920_11652898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.295 kcal (2) G-P(sol) polarization free energy of solvation -96.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds