Wall clock time and date at job start Mon Mar 8 2021 06:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47118 * 2 1 4 4 C 1.53008 * 109.47258 * 240.00106 * 2 1 3 5 5 Si 1.86304 * 109.47264 * 120.00318 * 2 1 3 6 6 C 1.86299 * 109.46655 * 299.99812 * 5 2 1 7 7 C 1.86295 * 109.47009 * 180.02562 * 5 2 1 8 8 O 1.63091 * 109.47128 * 59.99678 * 5 2 1 9 9 C 1.42902 * 114.00019 * 179.97438 * 8 5 2 10 10 C 1.50701 * 109.47292 * 179.97438 * 9 8 5 11 11 C 1.33729 * 122.07471 * 359.97438 * 10 9 8 12 12 S 1.76258 * 108.21264 * 179.77541 * 11 10 9 13 13 C 1.76167 * 89.83850 * 0.30125 * 12 11 10 14 14 C 1.47880 * 125.46937 * 179.97438 * 13 12 11 15 15 C 1.39526 * 120.13767 * 185.82797 * 14 13 12 16 16 C 1.50702 * 120.07702 * 0.02562 * 15 14 13 17 17 O 1.42900 * 109.47367 * 179.72072 * 16 15 14 18 18 C 1.37989 * 119.85356 * 179.72672 * 15 14 13 19 19 C 1.38332 * 120.14178 * 0.27933 * 18 15 14 20 20 C 1.38381 * 120.28711 * 359.97438 * 19 18 15 21 21 C 1.37951 * 120.14182 * 0.02562 * 20 19 18 22 22 C 1.50691 * 120.07233 * 179.97438 * 21 20 19 23 23 O 1.42905 * 109.47065 * 104.60611 * 22 21 20 24 24 Si 1.86306 * 109.47076 * 344.61025 * 22 21 20 25 25 H 1.48493 * 109.47146 * 59.99829 * 24 22 21 26 26 H 1.48502 * 109.47101 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47015 * 299.99464 * 24 22 21 28 28 N 1.30221 * 109.06007 * 359.69547 * 13 12 11 29 29 H 1.08994 * 109.46763 * 299.99931 * 1 2 3 30 30 H 1.08996 * 109.46828 * 59.99819 * 1 2 3 31 31 H 1.08999 * 109.46808 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47225 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47419 * 299.99819 * 3 2 1 34 34 H 1.08994 * 109.47247 * 60.00365 * 3 2 1 35 35 H 1.08997 * 109.46861 * 300.00390 * 4 2 1 36 36 H 1.09005 * 109.46731 * 59.99548 * 4 2 1 37 37 H 1.08993 * 109.47471 * 179.97438 * 4 2 1 38 38 H 1.09005 * 109.46576 * 180.02562 * 6 5 2 39 39 H 1.08997 * 109.47143 * 299.99622 * 6 5 2 40 40 H 1.08998 * 109.47465 * 60.00136 * 6 5 2 41 41 H 1.09005 * 109.47263 * 299.99431 * 7 5 2 42 42 H 1.08997 * 109.47712 * 59.99813 * 7 5 2 43 43 H 1.09000 * 109.47164 * 180.02562 * 7 5 2 44 44 H 1.09004 * 109.46323 * 60.00628 * 9 8 5 45 45 H 1.08996 * 109.47392 * 300.00155 * 9 8 5 46 46 H 1.07998 * 125.89339 * 0.05334 * 11 10 9 47 47 H 1.09002 * 109.47057 * 299.72735 * 16 15 14 48 48 H 1.09005 * 109.46916 * 59.72603 * 16 15 14 49 49 H 0.96692 * 114.00110 * 179.97438 * 17 16 15 50 50 H 1.07995 * 119.93185 * 180.30328 * 18 15 14 51 51 H 1.08001 * 119.85880 * 180.02562 * 19 18 15 52 52 H 1.07997 * 119.93100 * 180.02562 * 20 19 18 53 53 H 1.08999 * 109.47530 * 224.60986 * 22 21 20 54 54 H 0.96696 * 114.00377 * 300.00482 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 14 2.1511 -0.8783 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0140 -0.8776 1.5214 8 8 1.6074 -2.4159 1.5211 9 6 2.0296 -3.1817 2.6513 10 6 1.4721 -4.5781 2.5486 11 6 0.7057 -4.9631 1.5226 12 16 0.2658 -6.6523 1.7670 13 6 1.1776 -6.6665 3.2743 14 6 1.3224 -7.8275 4.1786 15 6 1.9699 -7.6829 5.4061 16 6 2.5234 -6.3420 5.8147 17 8 3.1285 -6.4495 7.1048 18 6 2.0968 -8.7688 6.2479 19 6 1.5888 -10.0002 5.8746 20 6 0.9503 -10.1515 4.6563 21 6 0.8169 -9.0737 3.8056 22 6 0.1218 -9.2403 2.4790 23 8 -1.1841 -8.6642 2.5498 24 14 -0.0206 -11.0537 2.0759 25 1 -0.8059 -11.7361 3.1355 26 1 -0.7061 -11.2179 0.7689 27 1 1.3364 -11.6523 2.0023 28 7 1.7085 -5.4922 3.4612 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 1.8938 -0.5137 3.9322 39 1 1.8935 1.0275 3.0422 40 1 0.4401 0.0000 3.0423 41 1 4.3778 -1.3912 0.6314 42 1 4.3771 0.1501 1.5217 43 1 4.3774 -1.3919 2.4111 44 1 1.6654 -2.7118 3.5650 45 1 3.1184 -3.2256 2.6743 46 1 0.4112 -4.3468 0.6860 47 1 3.2703 -6.0208 5.0886 48 1 1.7153 -5.6115 5.8521 49 1 3.5072 -5.6221 7.4317 50 1 2.5933 -8.6572 7.2004 51 1 1.6903 -10.8470 6.5372 52 1 0.5556 -11.1153 4.3708 53 1 0.6982 -8.7394 1.7012 54 1 -1.7536 -9.0621 3.2224 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13205920_12621894.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:55:21 Heat of formation + Delta-G solvation = -92.998249 kcal Electronic energy + Delta-G solvation = -33281.584604 eV Core-core repulsion = 29048.095280 eV Total energy + Delta-G solvation = -4233.489324 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 395.155 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.34600 -40.37742 -38.20108 -37.77642 -37.19217 -36.83840 -33.70893 -32.98161 -30.67714 -29.45267 -29.07143 -28.04936 -27.84172 -27.42691 -27.38528 -27.02189 -25.23446 -22.52893 -21.86683 -20.51499 -20.25671 -19.24078 -18.48838 -18.11001 -17.60776 -16.93025 -16.85489 -16.62302 -16.53687 -16.25465 -15.93165 -15.80053 -15.72870 -15.12371 -15.01859 -14.93794 -14.82500 -14.72185 -14.51341 -14.02124 -13.98661 -13.76726 -13.58509 -13.53624 -13.40813 -13.35009 -13.19415 -12.98357 -12.95838 -12.92187 -12.42388 -12.39336 -12.24638 -12.07190 -12.02428 -11.88500 -11.71923 -11.61994 -11.50183 -11.32632 -11.25239 -10.75511 -10.66738 -10.61679 -10.36149 -10.07519 -9.90545 -9.76290 -9.05667 -0.75285 0.16758 0.39467 0.51799 0.82272 1.14320 1.38135 1.47363 1.56912 1.76805 1.80578 1.92318 2.10313 2.39226 2.63399 2.94609 3.15996 3.47266 3.57651 3.83704 3.89318 4.05047 4.11272 4.12122 4.20800 4.24998 4.30068 4.39596 4.40518 4.46988 4.48044 4.56944 4.59728 4.62823 4.73164 4.75499 4.77031 4.78168 4.78730 4.82710 4.82848 4.93956 5.00067 5.08472 5.09176 5.09659 5.18015 5.26071 5.34685 5.38737 5.40882 5.42233 5.46596 5.49192 5.58884 5.63522 5.82744 6.64960 6.67783 6.86969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.379 4.379 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.322 2.678 6 C -0.519 4.519 7 C -0.519 4.519 8 O -0.635 6.635 9 C 0.160 3.840 10 C 0.033 3.967 11 C -0.261 4.261 12 S 0.193 5.807 13 C 0.077 3.923 14 C -0.017 4.017 15 C -0.064 4.064 16 C 0.132 3.868 17 O -0.588 6.588 18 C -0.105 4.105 19 C -0.095 4.095 20 C -0.127 4.127 21 C -0.102 4.102 22 C -0.106 4.106 23 O -0.535 6.535 24 Si 0.994 3.006 25 H -0.231 1.231 26 H -0.267 1.267 27 H -0.256 1.256 28 N -0.473 5.473 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.188 0.812 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.401 0.599 50 H 0.140 0.860 51 H 0.157 0.843 52 H 0.151 0.849 53 H 0.114 0.886 54 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 -1.492 1.056 1.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.422 4.422 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.453 2.547 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.593 6.593 9 C 0.082 3.918 10 C -0.099 4.099 11 C -0.399 4.399 12 S 0.452 5.548 13 C -0.196 4.196 14 C -0.021 4.021 15 C -0.067 4.067 16 C 0.055 3.945 17 O -0.397 6.397 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.144 4.144 21 C -0.105 4.105 22 C -0.216 4.216 23 O -0.343 6.343 24 Si 0.814 3.186 25 H -0.154 1.154 26 H -0.192 1.192 27 H -0.180 1.180 28 N -0.190 5.190 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.205 0.795 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.251 0.749 50 H 0.158 0.842 51 H 0.175 0.825 52 H 0.168 0.832 53 H 0.131 0.869 54 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.457 -3.338 -0.028 3.370 hybrid contribution 0.591 2.433 0.535 2.561 sum 0.135 -0.905 0.507 1.046 Atomic orbital electron populations 1.21544 0.94240 1.01786 1.01861 1.25876 1.00370 1.03013 1.12918 1.21603 1.01324 0.94621 1.02275 1.21546 1.01018 1.00019 0.96846 0.76108 0.62424 0.52003 0.64196 1.27104 1.06857 1.09978 1.18099 1.27103 1.25240 1.05122 1.04561 1.85226 1.79806 1.46707 1.47591 1.20243 0.98282 0.85752 0.87549 1.20103 1.00954 0.96986 0.91829 1.27653 1.05193 1.01708 1.05379 1.85777 1.46899 1.04335 1.17742 1.25790 1.00660 0.94628 0.98553 1.17480 1.01709 0.89975 0.92922 1.20032 0.97098 0.96589 0.93011 1.20835 0.96670 0.92777 0.84247 1.86319 1.78530 1.40351 1.34526 1.21182 0.99086 0.91918 1.00097 1.21626 0.95461 0.97963 0.96350 1.21273 1.00141 0.98497 0.94504 1.20342 1.00072 0.92440 0.97628 1.25369 0.86294 1.14191 0.95779 1.86574 1.21925 1.63650 1.62193 0.85027 0.81418 0.71512 0.80595 1.15375 1.19191 1.17959 1.66268 1.23331 1.00152 1.29255 0.92148 0.93273 0.92524 0.91764 0.93056 0.91779 0.92505 0.93278 0.92130 0.91075 0.90162 0.91218 0.91195 0.90158 0.91083 0.89853 0.89794 0.79503 0.91215 0.92073 0.74904 0.84193 0.82538 0.83165 0.86867 0.75840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 2 C -0.38 0.28 0.53 -10.79 -0.01 0.27 16 3 C -0.14 0.22 7.85 71.98 0.56 0.78 16 4 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 5 Si 1.32 -3.10 8.45 68.60 0.58 -2.52 16 6 C -0.52 0.90 8.50 113.37 0.96 1.87 16 7 C -0.52 0.93 8.50 113.37 0.96 1.89 16 8 O -0.63 -0.68 7.41 -148.98 -1.10 -1.79 16 9 C 0.16 0.26 5.72 71.24 0.41 0.66 16 10 C 0.03 0.20 6.69 41.61 0.28 0.48 16 11 C -0.26 -1.43 10.53 66.80 0.70 -0.73 16 12 S 0.19 0.88 16.96 -56.49 -0.96 -0.08 16 13 C 0.08 0.53 7.18 87.49 0.63 1.16 16 14 C -0.02 -0.10 5.87 -20.09 -0.12 -0.21 16 15 C -0.06 -0.37 5.91 -19.61 -0.12 -0.49 16 16 C 0.13 0.61 5.71 71.24 0.41 1.02 16 17 O -0.59 -1.58 12.14 -148.98 -1.81 -3.39 16 18 C -0.10 -0.35 9.37 22.23 0.21 -0.14 16 19 C -0.10 0.07 10.04 22.33 0.22 0.30 16 20 C -0.13 0.16 8.65 22.24 0.19 0.35 16 21 C -0.10 -0.15 5.29 -19.61 -0.10 -0.25 16 22 C -0.11 0.10 1.62 71.23 0.12 0.22 16 23 O -0.53 0.79 10.47 -148.98 -1.56 -0.77 16 24 Si 0.99 -3.35 25.51 68.60 1.75 -1.60 16 25 H -0.23 1.35 6.72 99.48 0.67 2.02 16 26 H -0.27 0.07 7.11 99.48 0.71 0.77 16 27 H -0.26 0.44 7.11 99.48 0.71 1.15 16 28 N -0.47 -3.49 7.29 -177.79 -1.30 -4.79 16 29 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 30 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.06 0.05 7.97 -2.39 -0.02 0.03 16 32 H 0.06 -0.20 7.79 -2.39 -0.02 -0.21 16 33 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 35 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 36 H 0.05 0.05 8.14 -2.38 -0.02 0.04 16 37 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 38 H 0.07 -0.16 7.48 -2.38 -0.02 -0.18 16 39 H 0.08 -0.22 7.79 -2.39 -0.02 -0.23 16 40 H 0.07 -0.05 7.79 -2.39 -0.02 -0.07 16 41 H 0.07 -0.06 7.79 -2.38 -0.02 -0.08 16 42 H 0.08 -0.22 7.79 -2.39 -0.02 -0.24 16 43 H 0.07 -0.16 7.48 -2.39 -0.02 -0.18 16 44 H 0.08 -0.08 7.21 -2.38 -0.02 -0.09 16 45 H 0.08 -0.08 7.21 -2.39 -0.02 -0.10 16 46 H 0.19 0.65 7.51 -2.91 -0.02 0.63 16 47 H 0.07 0.37 7.26 -2.39 -0.02 0.35 16 48 H 0.06 0.34 7.54 -2.38 -0.02 0.32 16 49 H 0.40 -2.32 9.12 -74.06 -0.68 -2.99 16 50 H 0.14 0.43 7.00 -2.91 -0.02 0.41 16 51 H 0.16 -0.96 8.06 -2.91 -0.02 -0.99 16 52 H 0.15 -0.88 4.89 -2.91 -0.01 -0.90 16 53 H 0.11 0.01 5.33 -15.34 -0.08 -0.07 16 54 H 0.39 -3.25 8.70 -74.06 -0.64 -3.90 16 Total: 0.00 -13.86 430.30 2.29 -11.57 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: 0.25 Total: -4.85 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 6.44 Total: 8.22 kcal Atomic # 7 Polarization: -3.49 SS G_CDS: -1.30 Total: -4.79 kcal Atomic # 8 Polarization: -1.47 SS G_CDS: -4.47 Total: -5.94 kcal Atomic # 14 Polarization: -6.45 SS G_CDS: 2.33 Total: -4.12 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -0.96 Total: -0.08 kcal Total: -13.86 2.29 -11.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13205920_12621894.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.429 kcal (2) G-P(sol) polarization free energy of solvation -13.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds