Wall clock time and date at job start Mon Mar 8 2021 08:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86300 * 109.47057 * 2 1 4 4 C 1.50692 * 109.47409 * 119.99872 * 2 1 3 5 5 C 1.39321 * 120.06211 * 75.00372 * 4 2 1 6 6 C 1.48387 * 120.11856 * 359.97438 * 5 4 2 7 7 C 1.39339 * 120.12263 * 244.73045 * 6 5 4 8 8 C 1.38021 * 119.87474 * 180.02562 * 7 6 5 9 9 C 1.38319 * 120.12474 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.87663 * 179.97438 * 9 8 7 11 11 H 1.08993 * 112.91004 * 11.24832 * 10 9 8 12 12 C 1.53962 * 113.66521 * 142.55243 * 10 9 8 13 13 C 1.53782 * 87.11063 * 139.88647 * 12 10 9 14 14 H 1.08996 * 113.68722 * 89.19879 * 13 12 10 15 15 O 1.42901 * 113.61110 * 220.08969 * 13 12 10 16 16 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 17 17 C 1.38318 * 120.24030 * 0.25764 * 9 8 7 18 18 C 1.38015 * 120.12549 * 359.49238 * 17 9 8 19 19 C 1.39355 * 119.76169 * 179.72919 * 5 4 2 20 20 C 1.50697 * 120.06233 * 180.27137 * 19 5 4 21 21 O 1.42905 * 109.47253 * 179.97438 * 20 19 5 22 22 C 1.38005 * 119.87694 * 0.24713 * 19 5 4 23 23 C 1.38339 * 120.11882 * 0.02562 * 22 19 5 24 24 C 1.38048 * 120.06624 * 255.23489 * 4 2 1 25 25 H 0.96702 * 114.00626 * 59.99867 * 1 2 3 26 26 H 1.08999 * 109.47211 * 240.00301 * 2 1 3 27 27 H 1.48502 * 110.00132 * 60.00084 * 3 2 1 28 28 H 1.48501 * 110.00123 * 181.32353 * 3 2 1 29 29 H 1.07999 * 120.05949 * 0.03918 * 7 6 5 30 30 H 1.08006 * 119.93443 * 179.97438 * 8 7 6 31 31 H 1.08997 * 113.53543 * 25.33321 * 12 10 9 32 32 H 1.08994 * 113.66446 * 254.45524 * 12 10 9 33 33 H 0.96705 * 113.99992 * 277.49360 * 15 13 12 34 34 H 1.09002 * 113.61445 * 139.98212 * 16 13 12 35 35 H 1.09002 * 113.61408 * 270.79943 * 16 13 12 36 36 H 1.08005 * 119.93635 * 179.74636 * 17 9 8 37 37 H 1.07997 * 120.06609 * 180.25413 * 18 17 9 38 38 H 1.09000 * 109.47199 * 299.99686 * 20 19 5 39 39 H 1.08996 * 109.47132 * 59.99859 * 20 19 5 40 40 H 0.96700 * 114.00144 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.94102 * 179.97438 * 22 19 5 42 42 H 1.08007 * 119.87617 * 180.02562 * 23 22 19 43 43 H 1.08000 * 119.93417 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.8698 -2.1000 1.3080 6 6 1.3092 -2.8847 0.1802 7 6 0.1392 -3.6211 0.3540 8 6 -0.3774 -4.3495 -0.6983 9 6 0.2637 -4.3490 -1.9240 10 6 -0.3050 -5.1468 -3.0690 11 1 -1.3109 -5.5162 -2.8704 12 6 -0.1612 -4.4540 -4.4364 13 6 0.1769 -5.8382 -5.0149 14 1 -0.6962 -6.3980 -5.3498 15 8 1.2254 -5.8124 -5.9855 16 6 0.6526 -6.2244 -3.6044 17 6 1.4281 -3.6235 -2.1007 18 6 1.9508 -2.8874 -1.0568 19 6 2.3414 -2.7508 2.4464 20 6 2.2838 -4.2541 2.5350 21 8 2.8227 -4.6784 3.7886 22 6 2.8617 -2.0162 3.4924 23 6 2.9151 -0.6361 3.4124 24 6 2.4490 0.0149 2.2848 25 1 -0.3934 0.4417 -0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5614 2.4679 1.2085 28 1 3.5345 1.7703 -0.0322 29 1 -0.3625 -3.6217 1.3104 30 1 -1.2841 -4.9210 -0.5645 31 1 0.6677 -3.7476 -4.4814 32 1 -1.0942 -4.0381 -4.8164 33 1 0.9324 -5.5701 -6.8746 34 1 0.3765 -7.2378 -3.3127 35 1 1.7044 -6.0034 -3.4225 36 1 1.9269 -3.6298 -3.0586 37 1 2.8577 -2.3181 -1.1971 38 1 1.2478 -4.5834 2.4543 39 1 2.8673 -4.6885 1.7233 40 1 2.8178 -5.6372 3.9146 41 1 3.2271 -2.5194 4.3753 42 1 3.3235 -0.0650 4.2331 43 1 2.4933 1.0925 2.2274 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13205920_13419902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:54 Heat of formation + Delta-G solvation = -49.033807 kcal Electronic energy + Delta-G solvation = -25989.260505 eV Core-core repulsion = 22352.544725 eV Total energy + Delta-G solvation = -3636.715780 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51043 -40.69274 -38.94671 -38.04911 -37.16910 -36.11318 -33.65751 -33.03477 -31.85726 -30.43016 -27.32892 -26.85305 -26.74890 -25.61839 -23.65755 -23.16322 -21.77521 -21.48097 -20.28590 -18.82019 -18.46998 -18.33659 -18.04843 -16.95417 -16.66687 -16.41472 -16.20814 -16.06036 -15.69191 -15.49738 -15.30451 -15.09265 -14.70111 -14.53795 -14.21915 -14.11751 -13.80948 -13.64803 -13.49315 -13.43737 -13.10764 -12.98630 -12.62609 -12.42355 -12.22734 -12.03499 -11.84191 -11.71306 -11.63829 -11.38467 -11.30226 -10.79010 -10.26807 -9.93345 -9.81477 -9.65225 -9.17782 -4.98279 0.03117 0.28964 0.49853 0.55844 1.28751 1.63884 1.97360 2.59020 2.77162 3.10560 3.17819 3.46693 3.51501 3.57279 3.63869 3.85500 3.86599 3.88595 3.96600 4.00326 4.04339 4.07009 4.09958 4.28374 4.31871 4.40882 4.46122 4.48982 4.51867 4.64904 4.66469 4.73521 4.75978 4.85792 4.92016 4.99384 5.01485 5.04138 5.15704 5.28498 5.39363 5.46815 5.51241 5.54556 5.66876 5.72033 5.94535 6.05311 6.60653 6.66486 6.66764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.069 4.069 3 Si 0.677 3.323 4 C -0.060 4.060 5 C -0.020 4.020 6 C -0.040 4.040 7 C -0.097 4.097 8 C -0.111 4.111 9 C -0.066 4.066 10 C -0.073 4.073 11 H 0.101 0.899 12 C -0.162 4.162 13 C 0.074 3.926 14 H 0.083 0.917 15 O -0.560 6.560 16 C -0.120 4.120 17 C -0.112 4.112 18 C -0.105 4.105 19 C -0.078 4.078 20 C 0.118 3.882 21 O -0.570 6.570 22 C -0.089 4.089 23 C -0.113 4.113 24 C -0.123 4.123 25 H 0.379 0.621 26 H 0.074 0.926 27 H -0.249 1.249 28 H -0.254 1.254 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.379 0.621 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.386 0.614 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 -0.576 -3.981 4.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.180 4.180 3 Si 0.578 3.422 4 C -0.060 4.060 5 C -0.021 4.021 6 C -0.040 4.040 7 C -0.115 4.115 8 C -0.129 4.129 9 C -0.066 4.066 10 C -0.092 4.092 11 H 0.119 0.881 12 C -0.200 4.200 13 C 0.015 3.985 14 H 0.101 0.899 15 O -0.366 6.366 16 C -0.157 4.157 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.078 4.078 20 C 0.041 3.959 21 O -0.376 6.376 22 C -0.107 4.107 23 C -0.131 4.131 24 C -0.140 4.140 25 H 0.226 0.774 26 H 0.092 0.908 27 H -0.174 1.174 28 H -0.179 1.179 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.227 0.773 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.233 0.767 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.109 0.171 -2.406 2.655 hybrid contribution -0.424 -0.857 -0.282 0.997 sum -1.533 -0.686 -2.689 3.170 Atomic orbital electron populations 1.86516 1.16891 1.81747 1.49292 1.24699 0.86059 1.09777 0.97428 0.95452 0.81084 0.78428 0.87192 1.19250 0.99625 0.92348 0.94773 1.18306 0.98636 0.91888 0.93238 1.18578 0.95470 0.97255 0.92722 1.21093 0.94963 0.96308 0.99090 1.20958 0.99989 0.99567 0.92405 1.19631 0.95184 0.97448 0.94324 1.21329 0.99451 0.96233 0.92142 0.88114 1.23855 1.02780 0.97961 0.95366 1.23358 0.90421 0.96055 0.88642 0.89925 1.86537 1.35852 1.92382 1.21803 1.23172 1.00595 0.98884 0.93077 1.20920 0.95929 0.97235 0.98903 1.21104 0.99740 0.99385 0.92046 1.19748 0.99516 0.94704 0.93795 1.20885 0.97991 0.91021 0.85996 1.86410 1.85817 1.28334 1.37059 1.21017 0.97708 0.93262 0.98728 1.21193 0.99521 0.94704 0.97684 1.20966 1.00014 0.99215 0.93818 0.77389 0.90818 1.17421 1.17854 0.86109 0.85875 0.88781 0.90911 0.77339 0.90579 0.88912 0.85691 0.86094 0.91866 0.92047 0.76663 0.84360 0.85346 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.75 12.80 -35.23 -0.45 -1.20 16 2 C -0.07 -0.08 2.10 36.00 0.08 -0.01 16 3 Si 0.68 -0.05 30.21 -169.99 -5.14 -5.18 16 4 C -0.06 -0.21 5.31 -104.29 -0.55 -0.77 16 5 C -0.02 -0.07 5.32 -104.90 -0.56 -0.63 16 6 C -0.04 -0.09 3.98 -104.90 -0.42 -0.51 16 7 C -0.10 -0.16 8.41 -39.25 -0.33 -0.49 16 8 C -0.11 -0.07 9.69 -39.63 -0.38 -0.45 16 9 C -0.07 -0.03 5.30 -104.56 -0.55 -0.58 16 10 C -0.07 0.07 3.99 -90.86 -0.36 -0.29 16 11 H 0.10 -0.19 8.09 -51.93 -0.42 -0.61 16 12 C -0.16 0.20 7.29 -25.82 -0.19 0.01 16 13 C 0.07 -0.07 5.22 -25.92 -0.14 -0.20 16 14 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 15 O -0.56 -0.22 13.67 -35.23 -0.48 -0.70 16 16 C -0.12 0.05 7.37 -25.92 -0.19 -0.15 16 17 C -0.11 -0.07 8.58 -39.63 -0.34 -0.41 16 18 C -0.10 -0.14 8.06 -39.25 -0.32 -0.46 16 19 C -0.08 -0.26 5.90 -104.29 -0.62 -0.87 16 20 C 0.12 0.16 6.29 36.00 0.23 0.38 16 21 O -0.57 -0.64 12.14 -35.23 -0.43 -1.07 16 22 C -0.09 -0.30 9.37 -39.63 -0.37 -0.67 16 23 C -0.11 -0.34 10.04 -39.52 -0.40 -0.74 16 24 C -0.12 -0.44 8.65 -39.63 -0.34 -0.79 16 25 H 0.38 -1.27 8.74 45.56 0.40 -0.88 16 26 H 0.07 0.01 5.68 -51.93 -0.30 -0.28 16 27 H -0.25 -0.68 6.74 56.52 0.38 -0.30 16 28 H -0.25 -0.61 7.11 56.52 0.40 -0.21 16 29 H 0.12 0.16 7.67 -52.49 -0.40 -0.24 16 30 H 0.12 -0.12 8.05 -52.48 -0.42 -0.54 16 31 H 0.09 -0.06 6.31 -51.93 -0.33 -0.39 16 32 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 33 H 0.38 -1.37 9.12 45.56 0.42 -0.96 16 34 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.09 0.07 7.71 -51.93 -0.40 -0.33 16 36 H 0.13 -0.03 6.66 -52.48 -0.35 -0.38 16 37 H 0.12 0.07 7.67 -52.49 -0.40 -0.33 16 38 H 0.06 0.03 6.72 -51.93 -0.35 -0.32 16 39 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 40 H 0.39 -1.28 9.12 45.56 0.42 -0.86 16 41 H 0.14 0.40 7.00 -52.49 -0.37 0.03 16 42 H 0.13 0.11 8.06 -52.48 -0.42 -0.31 16 43 H 0.12 0.36 4.90 -52.49 -0.26 0.10 16 LS Contribution 347.60 15.07 5.24 5.24 Total: 0.00 -8.24 347.60 -11.11 -19.35 By element: Atomic # 1 Polarization: -4.74 SS G_CDS: -4.10 Total: -8.84 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -5.75 Total: -7.60 kcal Atomic # 8 Polarization: -1.60 SS G_CDS: -1.36 Total: -2.96 kcal Atomic # 14 Polarization: -0.05 SS G_CDS: -5.14 Total: -5.18 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -8.24 -11.11 -19.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13205920_13419902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.686 kcal (2) G-P(sol) polarization free energy of solvation -8.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds