Wall clock time and date at job start Mon Mar 8 2021 08:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86300 * 109.47057 * 2 1 4 4 C 1.50692 * 109.47409 * 119.99872 * 2 1 3 5 5 C 1.39321 * 120.06211 * 75.00372 * 4 2 1 6 6 C 1.48387 * 120.11856 * 359.97438 * 5 4 2 7 7 C 1.39339 * 120.12263 * 244.73045 * 6 5 4 8 8 C 1.38021 * 119.87474 * 180.02562 * 7 6 5 9 9 C 1.38319 * 120.12474 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.87663 * 179.97438 * 9 8 7 11 11 H 1.08993 * 112.91004 * 11.24832 * 10 9 8 12 12 C 1.53962 * 113.66521 * 142.55243 * 10 9 8 13 13 C 1.53782 * 87.11063 * 139.88647 * 12 10 9 14 14 H 1.08996 * 113.68722 * 89.19879 * 13 12 10 15 15 O 1.42901 * 113.61110 * 220.08969 * 13 12 10 16 16 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 17 17 C 1.38318 * 120.24030 * 0.25764 * 9 8 7 18 18 C 1.38015 * 120.12549 * 359.49238 * 17 9 8 19 19 C 1.39355 * 119.76169 * 179.72919 * 5 4 2 20 20 C 1.50697 * 120.06233 * 180.27137 * 19 5 4 21 21 O 1.42905 * 109.47253 * 179.97438 * 20 19 5 22 22 C 1.38005 * 119.87694 * 0.24713 * 19 5 4 23 23 C 1.38339 * 120.11882 * 0.02562 * 22 19 5 24 24 C 1.38048 * 120.06624 * 255.23489 * 4 2 1 25 25 H 0.96702 * 114.00626 * 59.99867 * 1 2 3 26 26 H 1.08999 * 109.47211 * 240.00301 * 2 1 3 27 27 H 1.48502 * 110.00132 * 60.00084 * 3 2 1 28 28 H 1.48501 * 110.00123 * 181.32353 * 3 2 1 29 29 H 1.07999 * 120.05949 * 0.03918 * 7 6 5 30 30 H 1.08006 * 119.93443 * 179.97438 * 8 7 6 31 31 H 1.08997 * 113.53543 * 25.33321 * 12 10 9 32 32 H 1.08994 * 113.66446 * 254.45524 * 12 10 9 33 33 H 0.96705 * 113.99992 * 277.49360 * 15 13 12 34 34 H 1.09002 * 113.61445 * 139.98212 * 16 13 12 35 35 H 1.09002 * 113.61408 * 270.79943 * 16 13 12 36 36 H 1.08005 * 119.93635 * 179.74636 * 17 9 8 37 37 H 1.07997 * 120.06609 * 180.25413 * 18 17 9 38 38 H 1.09000 * 109.47199 * 299.99686 * 20 19 5 39 39 H 1.08996 * 109.47132 * 59.99859 * 20 19 5 40 40 H 0.96700 * 114.00144 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.94102 * 179.97438 * 22 19 5 42 42 H 1.08007 * 119.87617 * 180.02562 * 23 22 19 43 43 H 1.08000 * 119.93417 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.8698 -2.1000 1.3080 6 6 1.3092 -2.8847 0.1802 7 6 0.1392 -3.6211 0.3540 8 6 -0.3774 -4.3495 -0.6983 9 6 0.2637 -4.3490 -1.9240 10 6 -0.3050 -5.1468 -3.0690 11 1 -1.3109 -5.5162 -2.8704 12 6 -0.1612 -4.4540 -4.4364 13 6 0.1769 -5.8382 -5.0149 14 1 -0.6962 -6.3980 -5.3498 15 8 1.2254 -5.8124 -5.9855 16 6 0.6526 -6.2244 -3.6044 17 6 1.4281 -3.6235 -2.1007 18 6 1.9508 -2.8874 -1.0568 19 6 2.3414 -2.7508 2.4464 20 6 2.2838 -4.2541 2.5350 21 8 2.8227 -4.6784 3.7886 22 6 2.8617 -2.0162 3.4924 23 6 2.9151 -0.6361 3.4124 24 6 2.4490 0.0149 2.2848 25 1 -0.3934 0.4417 -0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5614 2.4679 1.2085 28 1 3.5345 1.7703 -0.0322 29 1 -0.3625 -3.6217 1.3104 30 1 -1.2841 -4.9210 -0.5645 31 1 0.6677 -3.7476 -4.4814 32 1 -1.0942 -4.0381 -4.8164 33 1 0.9324 -5.5701 -6.8746 34 1 0.3765 -7.2378 -3.3127 35 1 1.7044 -6.0034 -3.4225 36 1 1.9269 -3.6298 -3.0586 37 1 2.8577 -2.3181 -1.1971 38 1 1.2478 -4.5834 2.4543 39 1 2.8673 -4.6885 1.7233 40 1 2.8178 -5.6372 3.9146 41 1 3.2271 -2.5194 4.3753 42 1 3.3235 -0.0650 4.2331 43 1 2.4933 1.0925 2.2274 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13205920_13419902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:53 Heat of formation + Delta-G solvation = -49.069491 kcal Electronic energy + Delta-G solvation = -25989.262052 eV Core-core repulsion = 22352.544725 eV Total energy + Delta-G solvation = -3636.717327 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.58774 -40.71133 -38.96724 -38.12077 -37.24887 -36.07859 -33.76056 -33.18425 -31.90899 -30.51061 -27.43229 -26.98016 -26.65707 -25.63400 -23.69052 -23.23893 -21.85945 -21.63433 -20.21723 -18.79383 -18.54012 -18.38431 -18.16360 -17.00508 -16.65749 -16.48351 -16.28588 -16.11021 -15.77523 -15.53945 -15.40705 -15.13400 -14.77934 -14.55066 -14.28967 -14.22068 -13.86440 -13.67753 -13.61626 -13.38958 -13.24027 -13.07653 -12.60341 -12.44255 -12.26306 -12.15738 -11.95821 -11.73953 -11.67769 -11.39095 -11.27772 -10.69373 -10.32880 -10.08184 -9.91083 -9.80764 -9.27225 -5.01769 -0.11553 0.06669 0.44326 0.44820 1.23858 1.57998 1.90525 2.40965 2.71108 3.08142 3.30510 3.39834 3.49416 3.61787 3.67972 3.71937 3.83910 3.93550 3.95173 3.97251 4.03554 4.04942 4.14783 4.17535 4.22540 4.33278 4.38427 4.44484 4.53048 4.54536 4.67876 4.70762 4.82287 4.84471 4.84958 4.94208 5.01833 5.05750 5.18390 5.22325 5.26981 5.33626 5.38870 5.44828 5.57995 5.71936 5.76718 6.00943 6.76234 6.85508 6.91786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.077 4.077 3 Si 0.771 3.229 4 C -0.077 4.077 5 C -0.030 4.030 6 C -0.048 4.048 7 C -0.105 4.105 8 C -0.113 4.113 9 C -0.067 4.067 10 C -0.069 4.069 11 H 0.115 0.885 12 C -0.158 4.158 13 C 0.074 3.926 14 H 0.099 0.901 15 O -0.583 6.583 16 C -0.126 4.126 17 C -0.113 4.113 18 C -0.111 4.111 19 C -0.089 4.089 20 C 0.123 3.877 21 O -0.584 6.584 22 C -0.102 4.102 23 C -0.119 4.119 24 C -0.142 4.142 25 H 0.399 0.601 26 H 0.084 0.916 27 H -0.289 1.289 28 H -0.289 1.289 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.394 0.606 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.403 0.597 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.033 -1.126 -5.028 5.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.186 4.186 3 Si 0.676 3.324 4 C -0.077 4.077 5 C -0.030 4.030 6 C -0.048 4.048 7 C -0.123 4.123 8 C -0.130 4.130 9 C -0.067 4.067 10 C -0.087 4.087 11 H 0.133 0.867 12 C -0.195 4.195 13 C 0.015 3.985 14 H 0.117 0.883 15 O -0.391 6.391 16 C -0.163 4.163 17 C -0.131 4.131 18 C -0.129 4.129 19 C -0.089 4.089 20 C 0.046 3.954 21 O -0.394 6.394 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.160 4.160 25 H 0.249 0.751 26 H 0.102 0.898 27 H -0.217 1.217 28 H -0.216 1.216 29 H 0.137 0.863 30 H 0.158 0.842 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.244 0.756 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.254 0.746 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.041 -0.401 -3.488 4.062 hybrid contribution -0.128 -0.716 0.061 0.730 sum -2.170 -1.118 -3.428 4.208 Atomic orbital electron populations 1.86465 1.16839 1.82328 1.50844 1.24859 0.86251 1.10659 0.96850 0.94511 0.77571 0.75618 0.84689 1.19639 0.99566 0.92885 0.95614 1.18511 0.98665 0.92086 0.93730 1.18562 0.95920 0.97655 0.92627 1.21150 0.94979 0.96693 0.99449 1.21157 1.00478 0.99308 0.92099 1.19816 0.94955 0.97196 0.94728 1.21362 0.99820 0.95811 0.91697 0.86734 1.23806 1.02950 0.97710 0.95070 1.23453 0.90529 0.96353 0.88163 0.88349 1.86492 1.36964 1.92553 1.23116 1.23183 0.99860 0.99339 0.93945 1.21030 0.96096 0.97011 0.98943 1.21173 0.99947 0.99755 0.92017 1.20074 0.99147 0.95915 0.93789 1.20838 0.98499 0.89902 0.86180 1.86367 1.85839 1.30231 1.36921 1.21139 0.98303 0.93533 0.99055 1.21428 0.99278 0.94887 0.98073 1.21136 1.00918 0.99436 0.94468 0.75081 0.89799 1.21670 1.21597 0.86304 0.84222 0.89537 0.89907 0.75566 0.90121 0.90458 0.85067 0.85851 0.91050 0.91728 0.74580 0.84204 0.83718 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.55 12.80 -148.98 -1.91 -3.46 16 2 C -0.08 -0.22 2.10 71.23 0.15 -0.07 16 3 Si 0.77 0.33 30.21 68.60 2.07 2.40 16 4 C -0.08 -0.64 5.31 -19.65 -0.10 -0.74 16 5 C -0.03 -0.23 5.32 -20.04 -0.11 -0.34 16 6 C -0.05 -0.23 3.98 -20.04 -0.08 -0.31 16 7 C -0.10 -0.36 8.41 22.48 0.19 -0.17 16 8 C -0.11 -0.07 9.69 22.24 0.22 0.14 16 9 C -0.07 -0.01 5.30 -19.83 -0.11 -0.12 16 10 C -0.07 0.21 3.99 -10.95 -0.04 0.16 16 11 H 0.11 -0.64 8.09 -2.39 -0.02 -0.66 16 12 C -0.16 0.56 7.29 31.18 0.23 0.79 16 13 C 0.07 -0.20 5.22 31.12 0.16 -0.04 16 14 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 15 O -0.58 -0.17 13.67 -148.98 -2.04 -2.21 16 16 C -0.13 0.16 7.37 31.12 0.23 0.39 16 17 C -0.11 -0.14 8.58 22.24 0.19 0.06 16 18 C -0.11 -0.34 8.06 22.48 0.18 -0.16 16 19 C -0.09 -0.69 5.90 -19.65 -0.12 -0.81 16 20 C 0.12 0.40 6.29 71.23 0.45 0.85 16 21 O -0.58 -1.51 12.14 -148.98 -1.81 -3.32 16 22 C -0.10 -0.83 9.37 22.24 0.21 -0.62 16 23 C -0.12 -0.88 10.04 22.31 0.22 -0.66 16 24 C -0.14 -1.25 8.65 22.24 0.19 -1.06 16 25 H 0.40 -2.92 8.74 -74.06 -0.65 -3.57 16 26 H 0.08 0.04 5.68 -2.39 -0.01 0.03 16 27 H -0.29 -1.98 6.74 99.48 0.67 -1.31 16 28 H -0.29 -1.73 7.11 99.48 0.71 -1.03 16 29 H 0.12 0.38 7.67 -2.91 -0.02 0.36 16 30 H 0.14 -0.44 8.05 -2.91 -0.02 -0.47 16 31 H 0.09 -0.16 6.31 -2.39 -0.02 -0.18 16 32 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.39 -3.10 9.12 -74.05 -0.68 -3.77 16 34 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.08 0.15 7.71 -2.39 -0.02 0.13 16 36 H 0.13 -0.06 6.66 -2.91 -0.02 -0.08 16 37 H 0.12 0.23 7.67 -2.91 -0.02 0.21 16 38 H 0.07 0.09 6.72 -2.39 -0.02 0.08 16 39 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.40 -2.68 9.12 -74.06 -0.68 -3.36 16 41 H 0.14 0.98 7.00 -2.91 -0.02 0.96 16 42 H 0.15 0.40 8.06 -2.91 -0.02 0.38 16 43 H 0.12 0.93 4.90 -2.91 -0.01 0.92 16 Total: 0.00 -19.27 347.60 -2.54 -21.81 By element: Atomic # 1 Polarization: -11.60 SS G_CDS: -0.93 Total: -12.53 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 2.06 Total: -2.70 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: -5.75 Total: -8.99 kcal Atomic # 14 Polarization: 0.33 SS G_CDS: 2.07 Total: 2.40 kcal Total: -19.27 -2.54 -21.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13205920_13419902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.259 kcal (2) G-P(sol) polarization free energy of solvation -19.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds