Wall clock time and date at job start Mon Mar 8 2021 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35868 * 117.00123 * 2 1 4 4 C 1.38815 * 119.93903 * 180.27402 * 3 2 1 5 5 C 1.50693 * 119.96519 * 0.02562 * 4 3 2 6 6 O 1.42892 * 109.47332 * 285.27346 * 5 4 3 7 7 Si 1.86303 * 109.47231 * 165.27269 * 5 4 3 8 8 C 1.37930 * 120.06331 * 180.27407 * 4 3 2 9 9 C 1.39349 * 119.93625 * 359.73192 * 8 4 3 10 10 C 1.48360 * 120.06358 * 180.02562 * 9 8 4 11 11 C 1.39352 * 120.12494 * 359.70364 * 10 9 8 12 12 C 1.38013 * 119.87437 * 179.74638 * 11 10 9 13 13 C 1.38317 * 120.12710 * 0.52766 * 12 11 10 14 14 C 1.50696 * 119.88177 * 179.76718 * 13 12 11 15 15 H 1.08999 * 112.85287 * 168.78193 * 14 13 12 16 16 C 1.53791 * 113.61350 * 299.97770 * 14 13 12 17 17 C 1.53782 * 87.07797 * 139.97958 * 16 14 13 18 18 H 1.08992 * 113.61629 * 89.12325 * 17 16 14 19 19 O 1.42909 * 113.61046 * 219.93644 * 17 16 14 20 20 C 1.53781 * 87.08407 * 334.56692 * 17 16 14 21 21 C 1.38333 * 120.24470 * 359.74715 * 13 12 11 22 22 C 1.38006 * 120.12127 * 359.97390 * 21 13 12 23 23 C 1.39406 * 119.87063 * 359.97438 * 9 8 4 24 24 C 1.37883 * 119.93367 * 359.97438 * 23 9 8 25 25 H 1.08996 * 109.47071 * 299.99321 * 1 2 3 26 26 H 1.09005 * 109.47128 * 60.00147 * 1 2 3 27 27 H 1.09006 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47488 * 45.27436 * 5 4 3 29 29 H 0.96704 * 114.00257 * 179.97438 * 6 5 4 30 30 H 1.48496 * 109.99767 * 60.00005 * 7 5 4 31 31 H 1.48502 * 110.00176 * 181.32051 * 7 5 4 32 32 H 1.07997 * 120.02644 * 179.74670 * 8 4 3 33 33 H 1.08002 * 120.05631 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.93630 * 180.27122 * 12 11 10 35 35 H 1.08996 * 113.61250 * 254.52858 * 16 14 13 36 36 H 1.09005 * 113.60922 * 25.42865 * 16 14 13 37 37 H 0.96696 * 113.99945 * 180.02562 * 19 17 16 38 38 H 1.08999 * 113.61663 * 270.88455 * 20 17 16 39 39 H 1.08994 * 113.61144 * 139.98437 * 20 17 16 40 40 H 1.07998 * 119.93587 * 180.02562 * 21 13 12 41 41 H 1.08000 * 120.06378 * 180.02562 * 22 21 13 42 42 H 1.07999 * 120.03227 * 180.02562 * 23 9 8 43 43 H 1.08002 * 119.96348 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 3.4322 1.2817 -0.0058 5 6 4.2507 0.0165 -0.0126 6 8 4.2171 -0.5796 1.2856 7 14 6.0124 0.4191 -0.4656 8 6 4.0611 2.5093 -0.0001 9 6 3.3034 3.6788 0.0058 10 6 3.9769 5.0007 0.0114 11 6 5.3684 5.0767 0.0170 12 6 5.9896 6.3091 0.0168 13 6 5.2337 7.4675 0.0222 14 6 5.9178 8.8102 0.0273 15 1 5.2319 9.6354 -0.1642 16 6 6.8256 9.0344 1.2483 17 6 7.8204 9.7055 0.2866 18 1 7.6558 10.7761 0.1651 19 8 9.1857 9.3813 0.5573 20 6 7.1932 8.8551 -0.8306 21 6 3.8522 7.3980 0.0224 22 6 3.2204 6.1711 0.0168 23 6 1.9113 3.6042 0.0054 24 6 1.2882 2.3742 -0.0014 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8378 -0.6795 -0.7428 29 1 4.7239 -1.4003 1.3549 30 1 6.5869 1.3673 0.5224 31 1 6.8231 -0.8244 -0.5069 32 1 5.1397 2.5639 -0.0004 33 1 5.9595 4.1727 0.0177 34 1 7.0679 6.3691 0.0167 35 1 6.4040 9.7166 1.9864 36 1 7.2001 8.1106 1.6893 37 1 9.8162 9.8007 -0.0440 38 1 7.6683 7.8823 -0.9579 39 1 7.0685 9.3925 -1.7706 40 1 3.2669 8.3057 0.0262 41 1 2.1417 6.1179 0.0166 42 1 1.3216 4.5090 0.0095 43 1 0.2098 2.3159 -0.0013 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13569776_13419902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:35:42 Heat of formation + Delta-G solvation = -34.789766 kcal Electronic energy + Delta-G solvation = -25093.259191 eV Core-core repulsion = 21457.161079 eV Total energy + Delta-G solvation = -3636.098112 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52146 -40.98117 -39.51401 -38.33141 -37.51940 -35.99788 -33.29784 -32.80130 -31.72148 -29.90749 -28.31081 -26.79241 -26.67890 -25.73195 -24.00435 -23.27597 -22.23170 -21.45163 -20.20698 -19.20421 -18.70768 -18.44557 -17.67401 -17.40596 -16.68138 -16.60566 -16.48808 -15.81230 -15.64230 -15.54533 -15.26711 -15.06095 -14.74233 -14.41366 -14.26528 -14.07890 -13.88792 -13.71705 -13.55374 -13.46021 -13.27760 -12.84587 -12.72663 -12.62178 -12.31993 -12.10145 -11.93577 -11.80637 -11.69744 -11.43665 -11.35229 -10.75538 -10.35264 -10.04729 -9.91411 -9.82133 -8.54504 -4.94789 -0.21154 0.26016 0.53783 0.94784 1.31385 1.59796 1.95321 2.31459 2.53401 3.03613 3.21906 3.40668 3.55269 3.60453 3.71058 3.76097 3.80063 3.90278 3.93322 4.02480 4.05188 4.10393 4.13015 4.21777 4.25098 4.29751 4.40151 4.46562 4.48899 4.56633 4.60769 4.71941 4.77108 4.79315 4.89510 4.96377 4.99873 5.07935 5.19037 5.22513 5.26341 5.33899 5.37945 5.54181 5.73082 5.75857 5.80685 6.08499 6.38495 6.56702 6.69966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.156 3.844 4 C -0.103 4.103 5 C -0.063 4.063 6 O -0.531 6.531 7 Si 0.679 3.321 8 C -0.069 4.069 9 C -0.079 4.079 10 C -0.040 4.040 11 C -0.112 4.112 12 C -0.109 4.109 13 C -0.070 4.070 14 C -0.073 4.073 15 H 0.101 0.899 16 C -0.120 4.120 17 C 0.074 3.926 18 H 0.083 0.917 19 O -0.560 6.560 20 C -0.163 4.163 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.062 4.062 24 C -0.206 4.206 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.377 0.623 30 H -0.253 1.253 31 H -0.259 1.259 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.379 0.621 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 1.817 -3.759 4.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.109 3.891 4 C -0.104 4.104 5 C -0.173 4.173 6 O -0.338 6.338 7 Si 0.580 3.420 8 C -0.086 4.086 9 C -0.079 4.079 10 C -0.040 4.040 11 C -0.129 4.129 12 C -0.127 4.127 13 C -0.070 4.070 14 C -0.091 4.091 15 H 0.119 0.881 16 C -0.157 4.157 17 C 0.015 3.985 18 H 0.101 0.899 19 O -0.366 6.366 20 C -0.200 4.200 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.080 4.080 24 C -0.225 4.225 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.225 0.775 30 H -0.178 1.178 31 H -0.184 1.184 32 H 0.153 0.847 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.226 0.774 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.380 1.756 -2.910 3.668 hybrid contribution -0.324 -0.494 0.342 0.683 sum -1.704 1.262 -2.567 3.330 Atomic orbital electron populations 1.23127 0.78162 1.04299 1.01468 1.86125 1.21411 1.26484 1.87825 1.18873 0.91439 0.84445 0.94298 1.18463 0.90494 0.93819 1.07622 1.24592 1.09523 0.94985 0.88156 1.86618 1.74378 1.42935 1.29892 0.95201 0.74648 0.82541 0.89593 1.20982 0.99876 0.90516 0.97236 1.18546 0.92864 0.91805 1.04697 1.18671 0.93029 0.91698 1.00567 1.21194 0.93633 0.97864 1.00254 1.20951 1.00041 0.91644 1.00092 1.19660 0.93401 0.94238 0.99711 1.21299 0.95271 0.95019 0.97530 0.88103 1.23179 0.94412 1.01874 0.96274 1.23367 0.81480 0.97482 0.96157 0.89945 1.86540 1.16129 1.74327 1.59560 1.23831 0.96096 1.02005 0.98094 1.20969 0.93885 0.97626 1.00332 1.21171 0.99767 0.91615 1.00319 1.21058 0.93522 0.97333 0.96071 1.21215 1.00327 0.91984 1.08961 0.92485 0.92425 0.88008 0.90592 0.77533 1.17782 1.18361 0.84678 0.85869 0.85656 0.90553 0.88878 0.77366 0.88735 0.90927 0.85829 0.85714 0.85069 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.31 -0.87 9.82 -19.33 -0.19 -1.06 16 3 C 0.16 0.48 6.66 -39.14 -0.26 0.22 16 4 C -0.10 -0.32 5.30 -104.52 -0.55 -0.87 16 5 C -0.06 -0.12 2.36 36.00 0.08 -0.03 16 6 O -0.53 -1.65 12.85 -35.23 -0.45 -2.10 16 7 Si 0.68 0.18 30.19 -169.99 -5.13 -4.95 16 8 C -0.07 -0.17 8.03 -39.28 -0.32 -0.48 16 9 C -0.08 -0.18 5.88 -104.88 -0.62 -0.80 16 10 C -0.04 -0.08 5.88 -104.90 -0.62 -0.70 16 11 C -0.11 -0.20 9.43 -39.25 -0.37 -0.57 16 12 C -0.11 -0.14 8.59 -39.63 -0.34 -0.48 16 13 C -0.07 -0.06 5.29 -104.56 -0.55 -0.62 16 14 C -0.07 0.03 3.98 -90.96 -0.36 -0.33 16 15 H 0.10 -0.16 8.09 -51.93 -0.42 -0.58 16 16 C -0.12 -0.03 7.38 -25.91 -0.19 -0.22 16 17 C 0.07 -0.03 5.21 -25.92 -0.14 -0.16 16 18 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 19 O -0.56 -0.49 13.67 -35.23 -0.48 -0.97 16 20 C -0.16 0.12 7.29 -25.92 -0.19 -0.07 16 21 C -0.11 -0.08 9.69 -39.63 -0.38 -0.46 16 22 C -0.11 -0.12 9.43 -39.25 -0.37 -0.49 16 23 C -0.06 -0.08 9.42 -39.28 -0.37 -0.45 16 24 C -0.21 -0.30 9.02 -39.48 -0.36 -0.65 16 25 H 0.06 -0.08 7.66 -51.93 -0.40 -0.48 16 26 H 0.06 -0.12 7.65 -51.93 -0.40 -0.52 16 27 H 0.10 -0.24 8.14 -51.93 -0.42 -0.66 16 28 H 0.08 0.07 7.83 -51.93 -0.41 -0.33 16 29 H 0.38 -0.39 8.74 45.56 0.40 0.00 16 30 H -0.25 -0.67 6.75 56.52 0.38 -0.29 16 31 H -0.26 -0.51 7.11 56.52 0.40 -0.11 16 32 H 0.14 0.17 3.03 -52.49 -0.16 0.01 16 33 H 0.12 0.07 6.20 -52.49 -0.33 -0.25 16 34 H 0.13 0.05 6.64 -52.49 -0.35 -0.30 16 35 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 36 H 0.09 0.14 7.72 -51.93 -0.40 -0.26 16 37 H 0.38 -1.21 9.12 45.56 0.42 -0.80 16 38 H 0.09 -0.01 6.30 -51.93 -0.33 -0.34 16 39 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 40 H 0.12 -0.14 8.05 -52.49 -0.42 -0.56 16 41 H 0.13 -0.10 6.20 -52.49 -0.33 -0.43 16 42 H 0.13 -0.12 6.20 -52.49 -0.33 -0.45 16 43 H 0.13 -0.11 6.28 -52.49 -0.33 -0.44 16 LS Contribution 347.31 15.07 5.23 5.23 Total: 0.00 -7.75 347.31 -10.61 -18.36 By element: Atomic # 1 Polarization: -3.64 SS G_CDS: -4.68 Total: -8.32 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -4.91 Total: -6.19 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -1.12 Total: -4.13 kcal Atomic # 14 Polarization: 0.18 SS G_CDS: -5.13 Total: -4.95 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -7.75 -10.61 -18.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13569776_13419902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.432 kcal (2) G-P(sol) polarization free energy of solvation -7.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds