Wall clock time and date at job start Mon Mar 8 2021 05:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35868 * 117.00123 * 2 1 4 4 C 1.38815 * 119.93903 * 180.27402 * 3 2 1 5 5 C 1.50693 * 119.96519 * 0.02562 * 4 3 2 6 6 O 1.42892 * 109.47332 * 285.27346 * 5 4 3 7 7 Si 1.86303 * 109.47231 * 165.27269 * 5 4 3 8 8 C 1.37930 * 120.06331 * 180.27407 * 4 3 2 9 9 C 1.39349 * 119.93625 * 359.73192 * 8 4 3 10 10 C 1.48360 * 120.06358 * 180.02562 * 9 8 4 11 11 C 1.39352 * 120.12494 * 359.70364 * 10 9 8 12 12 C 1.38013 * 119.87437 * 179.74638 * 11 10 9 13 13 C 1.38317 * 120.12710 * 0.52766 * 12 11 10 14 14 C 1.50696 * 119.88177 * 179.76718 * 13 12 11 15 15 H 1.08999 * 112.85287 * 168.78193 * 14 13 12 16 16 C 1.53791 * 113.61350 * 299.97770 * 14 13 12 17 17 C 1.53782 * 87.07797 * 139.97958 * 16 14 13 18 18 H 1.08992 * 113.61629 * 89.12325 * 17 16 14 19 19 O 1.42909 * 113.61046 * 219.93644 * 17 16 14 20 20 C 1.53781 * 87.08407 * 334.56692 * 17 16 14 21 21 C 1.38333 * 120.24470 * 359.74715 * 13 12 11 22 22 C 1.38006 * 120.12127 * 359.97390 * 21 13 12 23 23 C 1.39406 * 119.87063 * 359.97438 * 9 8 4 24 24 C 1.37883 * 119.93367 * 359.97438 * 23 9 8 25 25 H 1.08996 * 109.47071 * 299.99321 * 1 2 3 26 26 H 1.09005 * 109.47128 * 60.00147 * 1 2 3 27 27 H 1.09006 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47488 * 45.27436 * 5 4 3 29 29 H 0.96704 * 114.00257 * 179.97438 * 6 5 4 30 30 H 1.48496 * 109.99767 * 60.00005 * 7 5 4 31 31 H 1.48502 * 110.00176 * 181.32051 * 7 5 4 32 32 H 1.07997 * 120.02644 * 179.74670 * 8 4 3 33 33 H 1.08002 * 120.05631 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.93630 * 180.27122 * 12 11 10 35 35 H 1.08996 * 113.61250 * 254.52858 * 16 14 13 36 36 H 1.09005 * 113.60922 * 25.42865 * 16 14 13 37 37 H 0.96696 * 113.99945 * 180.02562 * 19 17 16 38 38 H 1.08999 * 113.61663 * 270.88455 * 20 17 16 39 39 H 1.08994 * 113.61144 * 139.98437 * 20 17 16 40 40 H 1.07998 * 119.93587 * 180.02562 * 21 13 12 41 41 H 1.08000 * 120.06378 * 180.02562 * 22 21 13 42 42 H 1.07999 * 120.03227 * 180.02562 * 23 9 8 43 43 H 1.08002 * 119.96348 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 3.4322 1.2817 -0.0058 5 6 4.2507 0.0165 -0.0126 6 8 4.2171 -0.5796 1.2856 7 14 6.0124 0.4191 -0.4656 8 6 4.0611 2.5093 -0.0001 9 6 3.3034 3.6788 0.0058 10 6 3.9769 5.0007 0.0114 11 6 5.3684 5.0767 0.0170 12 6 5.9896 6.3091 0.0168 13 6 5.2337 7.4675 0.0222 14 6 5.9178 8.8102 0.0273 15 1 5.2319 9.6354 -0.1642 16 6 6.8256 9.0344 1.2483 17 6 7.8204 9.7055 0.2866 18 1 7.6558 10.7761 0.1651 19 8 9.1857 9.3813 0.5573 20 6 7.1932 8.8551 -0.8306 21 6 3.8522 7.3980 0.0224 22 6 3.2204 6.1711 0.0168 23 6 1.9113 3.6042 0.0054 24 6 1.2882 2.3742 -0.0014 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8378 -0.6795 -0.7428 29 1 4.7239 -1.4003 1.3549 30 1 6.5869 1.3673 0.5224 31 1 6.8231 -0.8244 -0.5069 32 1 5.1397 2.5639 -0.0004 33 1 5.9595 4.1727 0.0177 34 1 7.0679 6.3691 0.0167 35 1 6.4040 9.7166 1.9864 36 1 7.2001 8.1106 1.6893 37 1 9.8162 9.8007 -0.0440 38 1 7.6683 7.8823 -0.9579 39 1 7.0685 9.3925 -1.7706 40 1 3.2669 8.3057 0.0262 41 1 2.1417 6.1179 0.0166 42 1 1.3216 4.5090 0.0095 43 1 0.2098 2.3159 -0.0013 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13569776_13419902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:35:40 Heat of formation + Delta-G solvation = -32.328723 kcal Electronic energy + Delta-G solvation = -25093.152472 eV Core-core repulsion = 21457.161079 eV Total energy + Delta-G solvation = -3635.991393 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.58561 -40.99036 -39.53728 -38.41400 -37.64736 -36.00400 -33.38465 -32.86395 -31.77354 -29.94951 -28.27714 -26.87215 -26.66388 -25.74050 -24.06478 -23.30736 -22.29717 -21.51139 -20.18268 -19.26352 -18.70437 -18.60705 -17.72121 -17.48458 -16.72035 -16.63460 -16.45018 -15.88867 -15.67390 -15.58253 -15.34043 -15.12431 -14.75525 -14.44712 -14.33394 -14.11649 -13.98279 -13.77926 -13.59199 -13.46083 -13.31657 -12.87304 -12.74672 -12.61283 -12.32259 -12.12001 -11.97287 -11.87761 -11.77981 -11.47320 -11.29774 -10.70786 -10.47766 -10.12296 -10.01447 -9.87788 -8.63770 -5.00513 -0.30421 0.15342 0.48103 0.85593 1.23041 1.51561 1.84924 2.29813 2.45216 2.96922 3.30371 3.34428 3.59048 3.60434 3.68670 3.72578 3.74079 3.96420 3.97770 3.99518 4.05261 4.11933 4.12471 4.23999 4.29075 4.35525 4.37326 4.45028 4.49636 4.59393 4.69875 4.71543 4.78412 4.81486 4.85227 4.95125 5.00191 5.09176 5.16178 5.17348 5.20684 5.27057 5.38003 5.48284 5.66019 5.72540 5.73965 6.04797 6.33688 6.57940 6.90559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.138 3.862 4 C -0.124 4.124 5 C -0.075 4.075 6 O -0.555 6.555 7 Si 0.757 3.243 8 C -0.080 4.080 9 C -0.088 4.088 10 C -0.054 4.054 11 C -0.126 4.126 12 C -0.119 4.119 13 C -0.076 4.076 14 C -0.068 4.068 15 H 0.118 0.882 16 C -0.127 4.127 17 C 0.074 3.926 18 H 0.101 0.899 19 O -0.583 6.583 20 C -0.160 4.160 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.064 4.064 24 C -0.207 4.207 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.391 0.609 30 H -0.289 1.289 31 H -0.278 1.278 32 H 0.139 0.861 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.394 0.606 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 2.942 -4.352 5.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.092 3.908 4 C -0.124 4.124 5 C -0.183 4.183 6 O -0.365 6.365 7 Si 0.661 3.339 8 C -0.097 4.097 9 C -0.088 4.088 10 C -0.054 4.054 11 C -0.143 4.143 12 C -0.137 4.137 13 C -0.076 4.076 14 C -0.086 4.086 15 H 0.136 0.864 16 C -0.165 4.165 17 C 0.016 3.984 18 H 0.119 0.881 19 O -0.392 6.392 20 C -0.197 4.197 21 C -0.133 4.133 22 C -0.133 4.133 23 C -0.082 4.082 24 C -0.225 4.225 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.241 0.759 30 H -0.216 1.216 31 H -0.205 1.205 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.244 0.756 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.172 0.828 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.383 2.870 -3.519 5.128 hybrid contribution -0.024 -0.844 0.564 1.015 sum -2.407 2.027 -2.955 4.316 Atomic orbital electron populations 1.23361 0.76531 1.05501 1.02378 1.86090 1.23237 1.26688 1.87929 1.19115 0.91742 0.85105 0.94860 1.18712 0.91134 0.94339 1.08252 1.24847 1.10786 0.94891 0.87814 1.86567 1.75138 1.44033 1.30728 0.94257 0.72044 0.79653 0.87935 1.21087 1.00185 0.90714 0.97727 1.18724 0.93538 0.91816 1.04760 1.18801 0.93194 0.92082 1.01297 1.21338 0.93995 0.98255 1.00753 1.21060 1.00312 0.91883 1.00431 1.19886 0.93804 0.94665 0.99235 1.21342 0.95419 0.94772 0.97049 0.86423 1.23191 0.95179 1.01290 0.96815 1.23467 0.80849 0.98380 0.95730 0.88147 1.86496 1.17101 1.75027 1.60559 1.23779 0.95820 1.01590 0.98521 1.21258 0.93950 0.98352 0.99744 1.21433 1.00761 0.91357 0.99745 1.21343 0.93300 0.98216 0.95329 1.21484 1.01403 0.91495 1.08123 0.91937 0.91066 0.86780 0.89993 0.75874 1.21596 1.20493 0.84416 0.85709 0.85526 0.90029 0.90768 0.75559 0.89810 0.89832 0.83769 0.83876 0.82827 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.33 -2.04 9.82 -92.07 -0.90 -2.94 16 3 C 0.14 0.94 6.66 22.56 0.15 1.09 16 4 C -0.12 -0.92 5.30 -19.80 -0.10 -1.02 16 5 C -0.08 -0.38 2.36 71.23 0.17 -0.21 16 6 O -0.56 -4.20 12.85 -148.98 -1.92 -6.12 16 7 Si 0.76 1.29 30.19 68.60 2.07 3.36 16 8 C -0.08 -0.50 8.03 22.46 0.18 -0.32 16 9 C -0.09 -0.46 5.88 -20.03 -0.12 -0.58 16 10 C -0.05 -0.25 5.88 -20.04 -0.12 -0.37 16 11 C -0.13 -0.62 9.43 22.48 0.21 -0.41 16 12 C -0.12 -0.45 8.59 22.23 0.19 -0.26 16 13 C -0.08 -0.14 5.29 -19.82 -0.10 -0.25 16 14 C -0.07 0.10 3.98 -11.01 -0.04 0.05 16 15 H 0.12 -0.56 8.09 -2.39 -0.02 -0.58 16 16 C -0.13 -0.08 7.38 31.12 0.23 0.15 16 17 C 0.07 -0.09 5.21 31.12 0.16 0.07 16 18 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 19 O -0.58 -1.12 13.67 -148.98 -2.04 -3.15 16 20 C -0.16 0.28 7.29 31.12 0.23 0.51 16 21 C -0.12 -0.08 9.69 22.24 0.22 0.14 16 22 C -0.12 -0.19 9.43 22.48 0.21 0.02 16 23 C -0.06 -0.14 9.42 22.47 0.21 0.07 16 24 C -0.21 -0.55 9.02 22.33 0.20 -0.35 16 25 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 26 H 0.07 -0.36 7.65 -2.38 -0.02 -0.37 16 27 H 0.11 -0.57 8.14 -2.38 -0.02 -0.59 16 28 H 0.08 0.25 7.83 -2.38 -0.02 0.23 16 29 H 0.39 -0.34 8.74 -74.05 -0.65 -0.99 16 30 H -0.29 -2.13 6.75 99.48 0.67 -1.46 16 31 H -0.28 -1.32 7.11 99.48 0.71 -0.61 16 32 H 0.14 0.62 3.03 -2.91 -0.01 0.61 16 33 H 0.13 0.42 6.20 -2.91 -0.02 0.40 16 34 H 0.13 0.33 6.64 -2.91 -0.02 0.31 16 35 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.07 0.33 7.72 -2.38 -0.02 0.31 16 37 H 0.39 -2.55 9.12 -74.06 -0.68 -3.22 16 38 H 0.08 0.04 6.30 -2.39 -0.02 0.03 16 39 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.14 -0.58 8.05 -2.91 -0.02 -0.60 16 41 H 0.14 -0.43 6.20 -2.91 -0.02 -0.45 16 42 H 0.15 -0.49 6.20 -2.91 -0.02 -0.51 16 43 H 0.16 -0.41 6.28 -2.91 -0.02 -0.43 16 Total: 0.00 -18.49 347.31 -0.06 -18.55 By element: Atomic # 1 Polarization: -8.86 SS G_CDS: -0.25 Total: -9.11 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 2.98 Total: -0.58 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -4.86 Total: -12.22 kcal Atomic # 14 Polarization: 1.29 SS G_CDS: 2.07 Total: 3.36 kcal Total: -18.49 -0.06 -18.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13569776_13419902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.781 kcal (2) G-P(sol) polarization free energy of solvation -18.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds