Wall clock time and date at job start Mon Mar 8 2021 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35926 * 116.99938 * 2 1 4 4 C 1.38784 * 119.93262 * 0.02562 * 3 2 1 5 5 C 1.37957 * 120.06721 * 179.97438 * 4 3 2 6 6 C 1.39339 * 119.93593 * 0.02562 * 5 4 3 7 7 C 1.48403 * 120.07221 * 180.02562 * 6 5 4 8 8 C 1.34534 * 122.76593 * 129.70271 * 7 6 5 9 9 S 1.75859 * 109.54481 * 179.90663 * 8 7 6 10 10 C 1.75804 * 91.14734 * 0.30710 * 9 8 7 11 11 C 1.33076 * 109.92533 * 359.82642 * 10 9 8 12 12 C 1.50702 * 122.54432 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.47164 * 0.02705 * 12 11 10 14 14 Si 1.63102 * 113.99918 * 180.02562 * 13 12 11 15 15 C 1.86302 * 109.47029 * 299.99465 * 14 13 12 16 16 C 1.86296 * 109.47163 * 59.99685 * 14 13 12 17 17 C 1.86302 * 109.46968 * 179.97438 * 14 13 12 18 18 C 1.53007 * 109.47018 * 60.00204 * 17 14 13 19 19 C 1.53002 * 109.46946 * 179.97438 * 17 14 13 20 20 C 1.52996 * 109.47313 * 299.99809 * 17 14 13 21 21 C 1.39381 * 119.86496 * 359.72537 * 6 5 4 22 22 C 1.37933 * 119.92719 * 0.52640 * 21 6 5 23 23 C 1.50699 * 119.96322 * 179.77027 * 22 21 6 24 24 O 1.42903 * 109.47294 * 254.72598 * 23 22 21 25 25 Si 1.86301 * 109.47146 * 14.72554 * 23 22 21 26 26 H 1.48506 * 109.47302 * 299.99754 * 25 23 22 27 27 H 1.48503 * 109.47334 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47376 * 59.99883 * 25 23 22 29 29 H 1.09002 * 109.47023 * 300.00065 * 1 2 3 30 30 H 1.09001 * 109.47195 * 59.99682 * 1 2 3 31 31 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.96415 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.03444 * 179.97438 * 5 4 3 34 34 H 1.08004 * 125.22947 * 0.02803 * 8 7 6 35 35 H 1.08008 * 125.03659 * 179.79348 * 10 9 8 36 36 H 1.09002 * 109.46665 * 120.02348 * 12 11 10 37 37 H 1.08995 * 109.47149 * 240.02224 * 12 11 10 38 38 H 1.09005 * 109.46943 * 60.00205 * 15 14 13 39 39 H 1.08996 * 109.47367 * 179.97438 * 15 14 13 40 40 H 1.09001 * 109.47268 * 300.00283 * 15 14 13 41 41 H 1.08997 * 109.47204 * 60.00185 * 16 14 13 42 42 H 1.09007 * 109.46707 * 180.02562 * 16 14 13 43 43 H 1.08997 * 109.46948 * 299.99942 * 16 14 13 44 44 H 1.08997 * 109.47351 * 59.99582 * 18 17 14 45 45 H 1.08997 * 109.46879 * 179.97438 * 18 17 14 46 46 H 1.08997 * 109.46626 * 299.99618 * 18 17 14 47 47 H 1.09001 * 109.47026 * 60.00338 * 19 17 14 48 48 H 1.08997 * 109.47120 * 179.97438 * 19 17 14 49 49 H 1.08997 * 109.47232 * 300.00301 * 19 17 14 50 50 H 1.08998 * 109.46785 * 60.00412 * 20 17 14 51 51 H 1.09005 * 109.47097 * 180.02562 * 20 17 14 52 52 H 1.09001 * 109.47195 * 299.99990 * 20 17 14 53 53 H 1.07992 * 120.03847 * 180.30097 * 21 6 5 54 54 H 1.09002 * 109.47485 * 134.72507 * 23 22 21 55 55 H 0.96701 * 113.99613 * 299.99750 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2888 2.3742 0.0005 5 6 1.9122 3.6048 0.0011 6 6 3.3036 3.6795 0.0005 7 6 3.9773 5.0018 0.0017 8 6 4.9522 5.3215 0.8720 9 16 5.5022 6.9629 0.5624 10 6 4.3505 7.1382 -0.7542 11 6 3.6481 6.0166 -0.8947 12 6 2.5776 5.8565 -1.9433 13 8 2.4725 7.0612 -2.7046 14 14 1.3393 7.0086 -3.8765 15 6 1.7444 5.6373 -5.0708 16 6 -0.3302 6.6936 -3.1124 17 6 1.3092 8.6350 -4.7846 18 6 2.6803 8.8942 -5.4122 19 6 0.2467 8.5854 -5.8844 20 6 0.9762 9.7608 -3.8036 21 6 4.0614 2.5097 0.0052 22 6 3.4323 1.2822 -0.0006 23 6 4.2509 0.0169 -0.0007 24 8 4.2169 -0.5723 -1.3021 25 14 6.0127 0.4171 0.4539 26 1 6.5751 1.3705 -0.5361 27 1 6.8193 -0.8298 0.4543 28 1 6.0482 1.0294 1.8063 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2104 2.3157 0.0014 33 1 1.3224 4.5096 0.0011 34 1 5.3391 4.6695 1.6412 35 1 4.2303 8.0250 -1.3590 36 1 2.8379 5.0302 -2.6049 37 1 1.6235 5.6479 -1.4595 38 1 1.7618 4.6858 -4.5392 39 1 0.9869 5.6018 -5.8538 40 1 2.7213 5.8216 -5.5179 41 1 -0.5672 7.4959 -2.4137 42 1 -1.0874 6.6580 -3.8957 43 1 -0.3128 5.7422 -2.5808 44 1 2.9175 8.0921 -6.1111 45 1 2.6625 9.8455 -5.9439 46 1 3.4375 8.9294 -4.6290 47 1 -0.7303 8.4006 -5.4377 48 1 0.2287 9.5371 -6.4154 49 1 0.4842 7.7834 -6.5832 50 1 1.7335 9.7960 -3.0204 51 1 0.9582 10.7124 -4.3350 52 1 -0.0006 9.5761 -3.3565 53 1 5.1399 2.5643 0.0098 54 1 3.8382 -0.6830 0.7259 55 1 3.3288 -0.8070 -1.6044 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13569776_15607708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:25:11 Heat of formation + Delta-G solvation = -104.204021 kcal Electronic energy + Delta-G solvation = -33483.069959 eV Core-core repulsion = 29314.520627 eV Total energy + Delta-G solvation = -4168.549332 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 394.159 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.56327 -40.04218 -38.42833 -37.61588 -36.87873 -36.79923 -32.86599 -32.06414 -30.13765 -29.39042 -29.05785 -28.49059 -27.83336 -27.44272 -27.37257 -26.53666 -24.38132 -22.93610 -22.22748 -20.41947 -19.56202 -19.12510 -18.90617 -18.07950 -17.50726 -17.28265 -16.88935 -16.58349 -16.33332 -16.25834 -15.87128 -15.57299 -15.46523 -15.04622 -14.85245 -14.78727 -14.70663 -14.41899 -14.23278 -13.97540 -13.85754 -13.64325 -13.60710 -13.36803 -13.34343 -13.23467 -13.16748 -13.07522 -12.94856 -12.91654 -12.65626 -12.41274 -12.38156 -12.26656 -12.03576 -11.94122 -11.85591 -11.81508 -11.66346 -11.58284 -11.32110 -11.17918 -11.03244 -10.37284 -10.06405 -10.03732 -9.87160 -9.41861 -8.83824 -0.13478 0.17150 0.35119 0.71682 1.04719 1.17533 1.44794 1.47518 1.49191 1.63902 1.78916 1.92741 2.12376 2.28583 2.46502 2.61420 3.53935 3.67115 3.79328 3.95006 3.96979 4.07369 4.12829 4.13191 4.15828 4.23523 4.31832 4.37828 4.41854 4.42155 4.46867 4.47050 4.57553 4.66111 4.71489 4.73898 4.77408 4.78281 4.80204 4.82207 4.83022 4.84371 4.93611 5.00884 5.09940 5.10432 5.12583 5.12977 5.20479 5.24350 5.35897 5.41911 5.43847 5.44901 5.47869 5.58926 5.61768 5.65081 5.70472 6.33392 6.65404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.137 3.863 4 C -0.198 4.198 5 C -0.067 4.067 6 C -0.066 4.066 7 C -0.063 4.063 8 C -0.213 4.213 9 S 0.108 5.892 10 C -0.188 4.188 11 C -0.112 4.112 12 C 0.142 3.858 13 O -0.633 6.633 14 Si 1.316 2.684 15 C -0.521 4.521 16 C -0.515 4.515 17 C -0.380 4.380 18 C -0.138 4.138 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.083 4.083 22 C -0.154 4.154 23 C -0.081 4.081 24 O -0.552 6.552 25 Si 1.023 2.977 26 H -0.264 1.264 27 H -0.271 1.271 28 H -0.237 1.237 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.178 0.822 35 H 0.180 0.820 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.050 0.950 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.047 0.953 52 H 0.061 0.939 53 H 0.131 0.869 54 H 0.085 0.915 55 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 -0.643 1.086 5.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.091 3.909 4 C -0.216 4.216 5 C -0.085 4.085 6 C -0.068 4.068 7 C -0.076 4.076 8 C -0.349 4.349 9 S 0.374 5.626 10 C -0.323 4.323 11 C -0.124 4.124 12 C 0.064 3.936 13 O -0.593 6.593 14 Si 1.446 2.554 15 C -0.622 4.622 16 C -0.618 4.618 17 C -0.422 4.422 18 C -0.195 4.195 19 C -0.198 4.198 20 C -0.194 4.194 21 C -0.101 4.101 22 C -0.155 4.155 23 C -0.190 4.190 24 O -0.359 6.359 25 Si 0.844 3.156 26 H -0.188 1.188 27 H -0.196 1.196 28 H -0.160 1.160 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.175 0.825 33 H 0.164 0.836 34 H 0.195 0.805 35 H 0.197 0.803 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.066 0.934 52 H 0.080 0.920 53 H 0.149 0.851 54 H 0.103 0.897 55 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.157 0.607 2.140 3.098 hybrid contribution -2.562 -0.968 -1.226 3.000 sum -4.718 -0.361 0.914 4.819 Atomic orbital electron populations 1.23376 0.76216 1.05645 1.02502 1.86039 1.23467 1.26371 1.88205 1.18970 0.91279 0.85203 0.95442 1.21464 1.01457 0.91288 1.07434 1.21284 0.93027 0.98193 0.96018 1.18280 0.93231 0.90514 1.04817 1.17538 0.98637 0.94124 0.97330 1.25948 1.02957 1.00364 1.05611 1.84371 1.38208 1.09770 1.30222 1.25485 1.00637 1.03364 1.02796 1.18884 1.00952 0.93334 0.99213 1.20695 0.96714 0.85026 0.91123 1.85281 1.73975 1.41170 1.58833 0.76204 0.57716 0.63749 0.57739 1.27155 1.05569 1.15714 1.13787 1.27042 1.21144 1.05367 1.08210 1.25888 0.97789 1.15269 1.03302 1.21548 0.95827 1.01574 1.00535 1.21607 0.98196 1.02149 0.97894 1.21542 1.01625 0.97696 0.98516 1.21078 1.00013 0.90860 0.98119 1.19592 0.91798 0.95961 1.08173 1.25169 1.12181 0.92985 0.88646 1.86656 1.34635 1.82201 1.32366 0.84372 0.72144 0.79301 0.79790 1.18840 1.19606 1.15994 0.91598 0.91294 0.86623 0.82482 0.83566 0.80495 0.80303 0.91012 0.89743 0.91324 0.90282 0.91491 0.90847 0.90219 0.90718 0.92361 0.93313 0.92470 0.91634 0.93120 0.91963 0.92412 0.93387 0.91964 0.85147 0.89737 0.77375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.12 9.81 113.37 1.11 0.99 16 2 O -0.33 0.17 9.38 -92.71 -0.87 -0.69 16 3 C 0.14 0.16 6.62 22.54 0.15 0.31 16 4 C -0.20 0.37 9.02 22.33 0.20 0.57 16 5 C -0.07 0.06 8.57 22.47 0.19 0.25 16 6 C -0.07 -0.16 5.31 -20.03 -0.11 -0.27 16 7 C -0.06 -0.21 5.36 -21.15 -0.11 -0.32 16 8 C -0.21 -0.54 10.84 66.97 0.73 0.19 16 9 S 0.11 0.24 23.32 -56.49 -1.32 -1.08 16 10 C -0.19 -0.59 10.41 66.66 0.69 0.10 16 11 C -0.11 -0.34 5.79 -20.75 -0.12 -0.46 16 12 C 0.14 0.00 4.45 71.24 0.32 0.32 16 13 O -0.63 -0.11 7.42 -148.98 -1.11 -1.22 16 14 Si 1.32 -3.76 8.45 68.60 0.58 -3.18 16 15 C -0.52 0.65 8.50 113.37 0.96 1.62 16 16 C -0.52 1.86 8.50 113.37 0.96 2.82 16 17 C -0.38 0.39 0.53 -10.79 -0.01 0.38 16 18 C -0.14 -0.06 7.85 71.98 0.56 0.50 16 19 C -0.14 0.24 7.85 71.98 0.56 0.81 16 20 C -0.14 0.05 7.85 71.98 0.56 0.62 16 21 C -0.08 -0.31 8.20 22.47 0.18 -0.12 16 22 C -0.15 -0.52 5.28 -19.80 -0.10 -0.62 16 23 C -0.08 -0.25 2.33 71.24 0.17 -0.09 16 24 O -0.55 -2.69 12.65 -148.98 -1.89 -4.58 16 25 Si 1.02 3.20 25.73 68.60 1.77 4.97 16 26 H -0.26 -1.34 6.74 99.48 0.67 -0.67 16 27 H -0.27 -1.49 7.11 99.48 0.71 -0.78 16 28 H -0.24 -0.26 7.11 99.48 0.71 0.44 16 29 H 0.07 -0.57 7.65 -2.39 -0.02 -0.59 16 30 H 0.07 -0.63 7.66 -2.39 -0.02 -0.65 16 31 H 0.12 -1.14 8.14 -2.39 -0.02 -1.15 16 32 H 0.16 -1.11 6.28 -2.91 -0.02 -1.13 16 33 H 0.15 -0.66 6.51 -2.91 -0.02 -0.68 16 34 H 0.18 -0.11 8.06 -2.91 -0.02 -0.13 16 35 H 0.18 0.32 7.48 -2.91 -0.02 0.30 16 36 H 0.07 -0.05 7.21 -2.39 -0.02 -0.07 16 37 H 0.08 -0.33 5.19 -2.39 -0.01 -0.34 16 38 H 0.07 -0.10 7.48 -2.38 -0.02 -0.12 16 39 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 40 H 0.07 0.01 7.79 -2.39 -0.02 -0.01 16 41 H 0.07 -0.23 7.79 -2.39 -0.02 -0.25 16 42 H 0.08 -0.34 7.79 -2.38 -0.02 -0.36 16 43 H 0.07 -0.37 7.48 -2.39 -0.02 -0.39 16 44 H 0.06 -0.02 7.80 -2.39 -0.02 -0.04 16 45 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 47 H 0.06 -0.23 7.79 -2.39 -0.02 -0.25 16 48 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 49 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 50 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 51 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 52 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 53 H 0.13 0.41 4.88 -2.91 -0.01 0.40 16 54 H 0.08 0.09 7.82 -2.39 -0.02 0.07 16 55 H 0.38 0.07 8.59 -74.06 -0.64 -0.57 16 Total: 0.00 -10.72 444.09 5.05 -5.68 By element: Atomic # 1 Polarization: -8.46 SS G_CDS: 0.97 Total: -7.49 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.91 Total: 7.60 kcal Atomic # 8 Polarization: -2.63 SS G_CDS: -3.86 Total: -6.49 kcal Atomic # 14 Polarization: -0.56 SS G_CDS: 2.35 Total: 1.78 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.32 Total: -1.08 kcal Total: -10.72 5.05 -5.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13569776_15607708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.528 kcal (2) G-P(sol) polarization free energy of solvation -10.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds