Wall clock time and date at job start Mon Mar 8 2021 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34224 * 117.00262 * 2 1 4 4 O 1.20827 * 119.99948 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00107 * 180.02562 * 3 2 1 6 6 S 1.81400 * 109.47023 * 180.02562 * 5 3 2 7 7 O 1.42098 * 109.46987 * 289.05243 * 6 5 3 8 8 C 1.76197 * 102.99997 * 179.97438 * 6 5 3 9 9 C 1.38323 * 119.88087 * 269.72927 * 8 6 5 10 10 C 1.38016 * 120.11929 * 179.72524 * 9 8 6 11 11 C 1.39335 * 119.88270 * 0.56349 * 10 9 8 12 12 C 1.48386 * 120.12450 * 179.72868 * 11 10 9 13 13 C 1.39327 * 120.11171 * 123.64710 * 12 11 10 14 14 C 1.38044 * 119.93201 * 179.76983 * 13 12 11 15 15 C 1.38258 * 120.14687 * 0.50721 * 14 13 12 16 16 C 1.38569 * 120.21867 * 359.74455 * 15 14 13 17 17 F 1.35101 * 119.96682 * 179.97438 * 16 15 14 18 18 C 1.38223 * 120.06828 * 359.97438 * 16 15 14 19 19 C 1.50707 * 120.07375 * 179.97438 * 18 16 15 20 20 O 1.42901 * 109.46929 * 293.70154 * 19 18 16 21 21 Si 1.86294 * 109.46846 * 53.70141 * 19 18 16 22 22 H 1.48497 * 109.47433 * 53.94499 * 21 19 18 23 23 H 1.48498 * 109.47160 * 173.94668 * 21 19 18 24 24 H 1.48501 * 109.47356 * 293.94053 * 21 19 18 25 25 C 1.39334 * 119.75443 * 359.70616 * 11 10 9 26 26 C 1.38020 * 119.87892 * 0.02562 * 25 11 10 27 27 H 1.09004 * 109.47143 * 299.99907 * 1 2 3 28 28 H 1.09004 * 109.46951 * 59.99388 * 1 2 3 29 29 H 1.08997 * 109.47380 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46755 * 60.00237 * 5 3 2 31 31 H 1.09005 * 109.46583 * 300.00258 * 5 3 2 32 32 H 1.07998 * 119.93609 * 359.97275 * 9 8 6 33 33 H 1.08007 * 120.06073 * 180.29227 * 10 9 8 34 34 H 1.08009 * 120.03124 * 0.02562 * 13 12 11 35 35 H 1.07992 * 119.92796 * 180.25068 * 14 13 12 36 36 H 1.07997 * 119.89235 * 179.72666 * 15 14 13 37 37 H 1.09000 * 109.46600 * 173.70098 * 19 18 16 38 38 H 0.96700 * 114.00015 * 65.85907 * 20 19 18 39 39 H 1.08000 * 120.06524 * 180.02562 * 25 11 10 40 40 H 1.08002 * 119.93835 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 16 4.0807 3.0143 0.0003 7 8 3.7951 3.5933 -1.2655 8 6 5.8394 2.9076 0.0003 9 6 6.5276 2.8709 1.1996 10 6 7.9049 2.7816 1.2053 11 6 8.6029 2.7403 0.0001 12 6 10.0840 2.6504 0.0001 13 6 10.7210 1.6072 -0.6686 14 6 12.0992 1.5298 -0.6703 15 6 12.8488 2.4794 -0.0011 16 6 12.2216 3.5167 0.6704 17 9 12.9590 4.4415 1.3232 18 6 10.8423 3.6061 0.6731 19 6 10.1600 4.7338 1.4038 20 8 10.3842 4.5959 2.8083 21 14 10.8543 6.3613 0.8209 22 1 10.7534 6.4412 -0.6585 23 1 10.0838 7.4749 1.4304 24 1 12.2791 6.4653 1.2263 25 6 7.9049 2.7832 -1.2050 26 6 6.5273 2.8669 -1.1991 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9556 0.7809 -0.8908 31 1 3.9564 0.7804 0.8892 32 1 5.9859 2.9081 2.1332 33 1 8.4410 2.7483 2.1424 34 1 10.1370 0.8621 -1.1886 35 1 12.5930 0.7234 -1.1920 36 1 13.9267 2.4124 -0.0013 37 1 9.0893 4.7023 1.2019 38 1 11.3084 4.7044 3.0716 39 1 8.4409 2.7511 -2.1421 40 1 5.9853 2.9007 -2.1327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13569790_11652898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:26:08 Heat of formation + Delta-G solvation = -141.694891 kcal Electronic energy + Delta-G solvation = -28004.244867 eV Core-core repulsion = 23678.182819 eV Total energy + Delta-G solvation = -4326.062048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.078 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.24169 -41.45668 -41.25563 -39.44704 -37.76728 -37.62037 -36.89371 -34.12018 -32.52639 -31.95632 -31.79015 -30.30384 -28.26234 -27.09901 -25.04578 -23.82584 -22.83794 -22.55818 -22.27391 -19.40718 -18.90928 -18.82569 -18.53618 -17.85012 -17.73944 -17.65831 -17.34104 -17.23358 -16.79680 -16.35136 -16.34524 -15.76267 -15.69343 -15.49027 -15.21943 -15.15933 -14.74521 -14.62980 -14.56703 -14.44904 -13.92559 -13.79498 -13.63825 -13.42742 -13.25929 -13.12209 -12.96254 -12.74731 -12.38094 -12.25441 -12.11740 -11.86010 -11.76993 -11.59833 -11.40977 -10.81595 -10.54982 -10.07964 -9.81385 -9.74901 -9.47668 -0.61906 -0.10188 0.04496 0.25828 0.56498 1.05207 1.06984 1.44951 1.48381 1.50264 1.75208 1.90274 2.28267 2.50926 2.76188 2.94071 3.26048 3.36325 3.51476 3.61801 3.70554 3.75001 3.81676 3.86695 3.89944 4.11544 4.12498 4.22438 4.22978 4.25428 4.36055 4.41382 4.48955 4.56850 4.60327 4.73745 4.88856 4.94184 5.06401 5.07906 5.13718 5.18749 5.26957 5.36532 5.64363 5.75467 6.37939 6.54938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.492 3.508 4 O -0.504 6.504 5 C -0.479 4.479 6 S 1.391 4.609 7 O -0.826 6.826 8 C -0.475 4.475 9 C -0.038 4.038 10 C -0.117 4.117 11 C -0.016 4.016 12 C -0.013 4.013 13 C -0.109 4.109 14 C -0.087 4.087 15 C -0.141 4.141 16 C 0.096 3.904 17 F -0.131 7.131 18 C -0.131 4.131 19 C -0.085 4.085 20 O -0.530 6.530 21 Si 0.930 3.070 22 H -0.249 1.249 23 H -0.245 1.245 24 H -0.235 1.235 25 C -0.118 4.118 26 C -0.049 4.049 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.157 0.843 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.127 0.873 38 H 0.376 0.624 39 H 0.130 0.870 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -4.190 3.524 5.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.334 3.666 4 O -0.393 6.393 5 C -0.610 4.610 6 S 1.583 4.417 7 O -0.821 6.821 8 C -0.571 4.571 9 C -0.057 4.057 10 C -0.136 4.136 11 C -0.017 4.017 12 C -0.013 4.013 13 C -0.127 4.127 14 C -0.105 4.105 15 C -0.160 4.160 16 C 0.076 3.924 17 F -0.109 7.109 18 C -0.132 4.132 19 C -0.195 4.195 20 O -0.335 6.335 21 Si 0.749 3.251 22 H -0.172 1.172 23 H -0.168 1.168 24 H -0.158 1.158 25 C -0.137 4.137 26 C -0.068 4.068 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.146 0.854 31 H 0.175 0.825 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.145 0.855 38 H 0.223 0.777 39 H 0.148 0.852 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.593 -2.402 3.243 4.079 hybrid contribution 1.494 -1.525 -1.691 2.724 sum 2.087 -3.927 1.552 4.710 Atomic orbital electron populations 1.23399 0.75395 1.04237 1.03079 1.86500 1.24082 1.32777 1.83630 1.22494 0.90067 0.81889 0.72126 1.90750 1.66983 1.35958 1.45561 1.28231 0.94278 1.27313 1.11162 1.70737 0.80339 0.82258 1.08334 1.93122 1.79513 1.64996 1.44483 1.27997 1.19826 1.11894 0.97365 1.20860 0.93909 0.94232 0.96734 1.21538 0.94436 0.99749 0.97830 1.18891 0.91136 0.97707 0.93926 1.18412 0.91667 0.94091 0.97155 1.21332 0.94706 0.97729 0.98936 1.21039 0.93484 0.98250 0.97679 1.21273 1.01520 0.94360 0.98839 1.17428 0.88276 0.89677 0.96994 1.91491 1.76838 1.63548 1.79067 1.20295 0.91875 0.99299 1.01758 1.24994 1.05745 1.04159 0.84614 1.86521 1.32287 1.95063 1.19637 0.86072 0.81519 0.76210 0.81266 1.17226 1.16817 1.15795 1.21326 0.94202 1.00746 0.97445 1.21117 0.94295 0.93672 0.97752 0.91254 0.91568 0.87680 0.85390 0.82529 0.83818 0.84065 0.84710 0.84258 0.84071 0.85517 0.77677 0.85216 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.35 -0.44 10.56 -39.24 -0.41 -0.85 16 3 C 0.49 0.77 7.98 36.01 0.29 1.06 16 4 O -0.50 -2.11 15.61 -18.75 -0.29 -2.40 16 5 C -0.48 0.81 6.48 36.01 0.23 1.04 16 6 S 1.39 -1.01 12.68 -107.50 -1.36 -2.38 16 7 O -0.83 -4.71 16.89 -35.23 -0.59 -5.31 16 8 C -0.47 0.36 5.62 -39.52 -0.22 0.14 16 9 C -0.04 0.09 9.74 -39.63 -0.39 -0.29 16 10 C -0.12 0.12 7.64 -39.25 -0.30 -0.18 16 11 C -0.02 0.00 4.59 -104.90 -0.48 -0.48 16 12 C -0.01 0.00 5.40 -104.91 -0.57 -0.57 16 13 C -0.11 0.12 9.62 -39.25 -0.38 -0.26 16 14 C -0.09 0.15 10.03 -39.64 -0.40 -0.25 16 15 C -0.14 0.11 10.02 -39.45 -0.40 -0.28 16 16 C 0.10 0.05 6.58 -39.47 -0.26 -0.21 16 17 F -0.13 -0.13 12.93 2.25 0.03 -0.11 16 18 C -0.13 -0.07 4.65 -104.22 -0.48 -0.56 16 19 C -0.09 -0.02 2.03 36.01 0.07 0.05 16 20 O -0.53 -0.10 12.94 -35.23 -0.46 -0.56 16 21 Si 0.93 0.80 26.21 -169.99 -4.46 -3.65 16 22 H -0.25 -0.49 7.11 56.52 0.40 -0.09 16 23 H -0.24 -0.39 7.11 56.52 0.40 0.01 16 24 H -0.24 -0.29 5.94 56.52 0.34 0.05 16 25 C -0.12 -0.02 9.62 -39.25 -0.38 -0.40 16 26 C -0.05 -0.04 9.43 -39.63 -0.37 -0.42 16 27 H 0.07 -0.10 8.13 -51.93 -0.42 -0.52 16 28 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 29 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 30 H 0.13 -0.19 8.14 -51.93 -0.42 -0.62 16 31 H 0.16 -0.84 8.14 -51.92 -0.42 -1.27 16 32 H 0.14 -0.90 8.06 -52.49 -0.42 -1.32 16 33 H 0.14 -0.20 7.74 -52.48 -0.41 -0.60 16 34 H 0.14 -0.35 8.06 -52.48 -0.42 -0.78 16 35 H 0.14 -0.55 8.06 -52.49 -0.42 -0.97 16 36 H 0.14 -0.34 8.06 -52.49 -0.42 -0.77 16 37 H 0.13 -0.02 5.06 -51.93 -0.26 -0.28 16 38 H 0.38 -0.73 7.57 45.56 0.34 -0.38 16 39 H 0.13 -0.13 8.06 -52.49 -0.42 -0.55 16 40 H 0.13 0.22 7.44 -52.49 -0.39 -0.17 16 LS Contribution 356.74 15.07 5.38 5.38 Total: 0.00 -10.97 356.74 -8.94 -19.90 By element: Atomic # 1 Polarization: -5.66 SS G_CDS: -3.80 Total: -9.46 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.96 Total: -0.56 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -1.76 Total: -9.12 kcal Atomic # 9 Polarization: -0.13 SS G_CDS: 0.03 Total: -0.11 kcal Atomic # 14 Polarization: 0.80 SS G_CDS: -4.46 Total: -3.65 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -1.36 Total: -2.38 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -10.97 -8.94 -19.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13569790_11652898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.792 kcal (2) G-P(sol) polarization free energy of solvation -10.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds