Wall clock time and date at job start Mon Mar 8 2021 06:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34224 * 117.00262 * 2 1 4 4 O 1.20827 * 119.99948 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00107 * 180.02562 * 3 2 1 6 6 S 1.81400 * 109.47023 * 180.02562 * 5 3 2 7 7 O 1.42098 * 109.46987 * 289.05243 * 6 5 3 8 8 C 1.76197 * 102.99997 * 179.97438 * 6 5 3 9 9 C 1.38323 * 119.88087 * 269.72927 * 8 6 5 10 10 C 1.38016 * 120.11929 * 179.72524 * 9 8 6 11 11 C 1.39335 * 119.88270 * 0.56349 * 10 9 8 12 12 C 1.48386 * 120.12450 * 179.72868 * 11 10 9 13 13 C 1.39327 * 120.11171 * 123.64710 * 12 11 10 14 14 C 1.38044 * 119.93201 * 179.76983 * 13 12 11 15 15 C 1.38258 * 120.14687 * 0.50721 * 14 13 12 16 16 C 1.38569 * 120.21867 * 359.74455 * 15 14 13 17 17 F 1.35101 * 119.96682 * 179.97438 * 16 15 14 18 18 C 1.38223 * 120.06828 * 359.97438 * 16 15 14 19 19 C 1.50707 * 120.07375 * 179.97438 * 18 16 15 20 20 O 1.42901 * 109.46929 * 293.70154 * 19 18 16 21 21 Si 1.86294 * 109.46846 * 53.70141 * 19 18 16 22 22 H 1.48497 * 109.47433 * 53.94499 * 21 19 18 23 23 H 1.48498 * 109.47160 * 173.94668 * 21 19 18 24 24 H 1.48501 * 109.47356 * 293.94053 * 21 19 18 25 25 C 1.39334 * 119.75443 * 359.70616 * 11 10 9 26 26 C 1.38020 * 119.87892 * 0.02562 * 25 11 10 27 27 H 1.09004 * 109.47143 * 299.99907 * 1 2 3 28 28 H 1.09004 * 109.46951 * 59.99388 * 1 2 3 29 29 H 1.08997 * 109.47380 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46755 * 60.00237 * 5 3 2 31 31 H 1.09005 * 109.46583 * 300.00258 * 5 3 2 32 32 H 1.07998 * 119.93609 * 359.97275 * 9 8 6 33 33 H 1.08007 * 120.06073 * 180.29227 * 10 9 8 34 34 H 1.08009 * 120.03124 * 0.02562 * 13 12 11 35 35 H 1.07992 * 119.92796 * 180.25068 * 14 13 12 36 36 H 1.07997 * 119.89235 * 179.72666 * 15 14 13 37 37 H 1.09000 * 109.46600 * 173.70098 * 19 18 16 38 38 H 0.96700 * 114.00015 * 65.85907 * 20 19 18 39 39 H 1.08000 * 120.06524 * 180.02562 * 25 11 10 40 40 H 1.08002 * 119.93835 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 16 4.0807 3.0143 0.0003 7 8 3.7951 3.5933 -1.2655 8 6 5.8394 2.9076 0.0003 9 6 6.5276 2.8709 1.1996 10 6 7.9049 2.7816 1.2053 11 6 8.6029 2.7403 0.0001 12 6 10.0840 2.6504 0.0001 13 6 10.7210 1.6072 -0.6686 14 6 12.0992 1.5298 -0.6703 15 6 12.8488 2.4794 -0.0011 16 6 12.2216 3.5167 0.6704 17 9 12.9590 4.4415 1.3232 18 6 10.8423 3.6061 0.6731 19 6 10.1600 4.7338 1.4038 20 8 10.3842 4.5959 2.8083 21 14 10.8543 6.3613 0.8209 22 1 10.7534 6.4412 -0.6585 23 1 10.0838 7.4749 1.4304 24 1 12.2791 6.4653 1.2263 25 6 7.9049 2.7832 -1.2050 26 6 6.5273 2.8669 -1.1991 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9556 0.7809 -0.8908 31 1 3.9564 0.7804 0.8892 32 1 5.9859 2.9081 2.1332 33 1 8.4410 2.7483 2.1424 34 1 10.1370 0.8621 -1.1886 35 1 12.5930 0.7234 -1.1920 36 1 13.9267 2.4124 -0.0013 37 1 9.0893 4.7023 1.2019 38 1 11.3084 4.7044 3.0716 39 1 8.4409 2.7511 -2.1421 40 1 5.9853 2.9007 -2.1327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13569790_11652898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:26:07 Heat of formation + Delta-G solvation = -142.243890 kcal Electronic energy + Delta-G solvation = -28004.268673 eV Core-core repulsion = 23678.182819 eV Total energy + Delta-G solvation = -4326.085854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.078 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.24241 -41.55571 -41.17705 -39.36497 -37.73674 -37.73155 -37.09674 -34.03784 -32.45004 -31.87956 -31.75851 -30.22031 -28.19650 -27.05486 -24.96890 -23.75617 -22.78015 -22.57448 -22.22516 -19.38348 -18.88643 -18.85946 -18.51328 -17.82253 -17.78710 -17.70450 -17.33893 -17.21206 -16.76953 -16.30096 -16.27326 -15.77909 -15.65389 -15.46372 -15.18317 -15.09027 -14.76938 -14.60164 -14.51942 -14.40117 -13.99962 -13.74955 -13.60359 -13.38176 -13.15921 -13.09020 -12.92585 -12.70981 -12.40709 -12.23935 -12.15290 -11.90674 -11.89379 -11.67644 -11.45157 -10.79811 -10.50562 -9.99926 -9.75891 -9.73220 -9.43804 -0.54860 -0.03272 0.11873 0.33726 0.60824 0.96542 1.02649 1.33729 1.37319 1.57068 1.78423 1.79703 2.36779 2.56967 2.78969 3.00527 3.32308 3.44018 3.56795 3.62065 3.80888 3.84041 3.96393 3.99083 4.02973 4.24240 4.24678 4.29924 4.36878 4.43181 4.45143 4.49287 4.60624 4.69009 4.70104 4.82371 4.99780 5.05141 5.14671 5.18411 5.21766 5.23818 5.30307 5.45396 5.75058 5.85203 6.47198 6.47775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.359 6.359 3 C 0.487 3.513 4 O -0.537 6.537 5 C -0.471 4.471 6 S 1.430 4.570 7 O -0.898 6.898 8 C -0.474 4.474 9 C -0.026 4.026 10 C -0.121 4.121 11 C -0.021 4.021 12 C -0.022 4.022 13 C -0.111 4.111 14 C -0.083 4.083 15 C -0.146 4.146 16 C 0.078 3.922 17 F -0.138 7.138 18 C -0.142 4.142 19 C -0.076 4.076 20 O -0.535 6.535 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.256 1.256 24 H -0.241 1.241 25 C -0.126 4.126 26 C -0.070 4.070 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.202 0.798 32 H 0.189 0.811 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.131 0.869 38 H 0.384 0.616 39 H 0.133 0.867 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.180 -5.851 4.901 7.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.275 6.275 3 C 0.331 3.669 4 O -0.428 6.428 5 C -0.604 4.604 6 S 1.626 4.374 7 O -0.894 6.894 8 C -0.571 4.571 9 C -0.045 4.045 10 C -0.140 4.140 11 C -0.021 4.021 12 C -0.023 4.023 13 C -0.129 4.129 14 C -0.101 4.101 15 C -0.165 4.165 16 C 0.059 3.941 17 F -0.117 7.117 18 C -0.143 4.143 19 C -0.186 4.186 20 O -0.342 6.342 21 Si 0.768 3.232 22 H -0.193 1.193 23 H -0.180 1.180 24 H -0.164 1.164 25 C -0.145 4.145 26 C -0.090 4.090 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.220 0.780 32 H 0.206 0.794 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.182 0.818 36 H 0.173 0.827 37 H 0.148 0.852 38 H 0.233 0.767 39 H 0.151 0.849 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.088 -4.055 4.622 6.244 hybrid contribution 1.367 -1.085 -2.105 2.734 sum 2.455 -5.139 2.517 6.227 Atomic orbital electron populations 1.23626 0.74485 1.05885 1.02896 1.86499 1.25139 1.32539 1.83327 1.23043 0.91166 0.81539 0.71135 1.90742 1.67955 1.36937 1.47179 1.28195 0.92318 1.26441 1.13427 1.69863 0.79594 0.82047 1.05909 1.93016 1.81152 1.68096 1.47128 1.27892 1.19299 1.12373 0.97563 1.21339 0.93591 0.91883 0.97698 1.21739 0.95072 0.99528 0.97691 1.18979 0.91212 0.97742 0.94170 1.18530 0.91790 0.94469 0.97491 1.21581 0.95231 0.97623 0.98487 1.21354 0.93305 0.98429 0.97028 1.21542 1.02470 0.94025 0.98440 1.17645 0.88441 0.90220 0.97785 1.91466 1.76967 1.63922 1.79330 1.20331 0.92033 0.99621 1.02331 1.24834 1.05775 1.03347 0.84677 1.86488 1.33188 1.95005 1.19474 0.85865 0.80979 0.76622 0.79704 1.19296 1.18018 1.16386 1.21357 0.93962 1.01248 0.97981 1.21106 0.94766 0.95228 0.97859 0.90778 0.92498 0.85158 0.85212 0.78044 0.79411 0.83351 0.83326 0.81804 0.82653 0.85181 0.76709 0.84894 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.73 10.56 -51.35 -0.54 -1.27 16 3 C 0.49 1.51 7.98 71.24 0.57 2.08 16 4 O -0.54 -4.99 15.61 21.96 0.34 -4.65 16 5 C -0.47 2.04 6.48 71.24 0.46 2.50 16 6 S 1.43 -1.74 12.68 -56.49 -0.72 -2.46 16 7 O -0.90 -12.17 16.89 -148.98 -2.52 -14.69 16 8 C -0.47 0.87 5.62 22.31 0.13 0.99 16 9 C -0.03 0.18 9.74 22.24 0.22 0.39 16 10 C -0.12 0.40 7.64 22.48 0.17 0.57 16 11 C -0.02 0.01 4.59 -20.05 -0.09 -0.08 16 12 C -0.02 0.00 5.40 -20.05 -0.11 -0.11 16 13 C -0.11 0.33 9.62 22.49 0.22 0.55 16 14 C -0.08 0.38 10.03 22.23 0.22 0.60 16 15 C -0.15 0.32 10.02 22.35 0.22 0.55 16 16 C 0.08 0.09 6.58 22.35 0.15 0.24 16 17 F -0.14 -0.35 12.93 44.97 0.58 0.23 16 18 C -0.14 -0.17 4.65 -19.60 -0.09 -0.26 16 19 C -0.08 -0.05 2.03 71.24 0.14 0.09 16 20 O -0.54 -0.06 12.94 -148.98 -1.93 -1.98 16 21 Si 0.95 2.66 26.21 68.60 1.80 4.45 16 22 H -0.27 -1.55 7.11 99.48 0.71 -0.85 16 23 H -0.26 -1.11 7.11 99.48 0.71 -0.41 16 24 H -0.24 -0.84 5.94 99.48 0.59 -0.25 16 25 C -0.13 -0.13 9.62 22.48 0.22 0.08 16 26 C -0.07 -0.20 9.43 22.24 0.21 0.01 16 27 H 0.07 -0.21 8.13 -2.38 -0.02 -0.23 16 28 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 29 H 0.13 -0.97 8.14 -2.39 -0.02 -0.99 16 30 H 0.13 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.20 -2.79 8.14 -2.39 -0.02 -2.81 16 32 H 0.19 -3.03 8.06 -2.91 -0.02 -3.05 16 33 H 0.15 -0.67 7.74 -2.91 -0.02 -0.69 16 34 H 0.15 -0.93 8.06 -2.91 -0.02 -0.95 16 35 H 0.16 -1.63 8.06 -2.91 -0.02 -1.65 16 36 H 0.16 -0.89 8.06 -2.91 -0.02 -0.92 16 37 H 0.13 -0.04 5.06 -2.39 -0.01 -0.05 16 38 H 0.38 -1.47 7.57 -74.06 -0.56 -2.03 16 39 H 0.13 -0.10 8.06 -2.91 -0.02 -0.13 16 40 H 0.11 0.69 7.44 -2.91 -0.02 0.67 16 Total: 0.00 -27.87 356.74 2.02 -25.84 By element: Atomic # 1 Polarization: -16.02 SS G_CDS: 1.17 Total: -14.84 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 3.83 Total: 9.36 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -4.64 Total: -22.59 kcal Atomic # 9 Polarization: -0.35 SS G_CDS: 0.58 Total: 0.23 kcal Atomic # 14 Polarization: 2.66 SS G_CDS: 1.80 Total: 4.45 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -0.72 Total: -2.46 kcal Total: -27.87 2.02 -25.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13569790_11652898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.402 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds