Wall clock time and date at job start Mon Mar 8 2021 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35250 * 117.00107 * 2 1 4 4 O 1.21773 * 120.00355 * 359.97438 * 3 2 1 5 5 C 1.40015 * 119.99742 * 179.97438 * 3 2 1 6 6 S 1.55351 * 120.00217 * 179.97438 * 5 3 2 7 7 O 1.52198 * 103.00145 * 286.87607 * 6 5 3 8 8 C 1.76197 * 103.00542 * 179.97438 * 6 5 3 9 9 C 1.38319 * 119.88188 * 210.00022 * 8 6 5 10 10 C 1.38021 * 120.11754 * 180.23515 * 9 8 6 11 11 C 1.39330 * 119.87848 * 359.51158 * 10 9 8 12 12 C 1.48402 * 120.11714 * 180.23017 * 11 10 9 13 13 C 1.39331 * 120.10389 * 123.76925 * 12 11 10 14 14 C 1.38051 * 119.92612 * 179.79147 * 13 12 11 15 15 C 1.38254 * 120.14692 * 0.48630 * 14 13 12 16 16 C 1.38569 * 120.22035 * 359.74200 * 15 14 13 17 17 F 1.35104 * 119.96184 * 179.97438 * 16 15 14 18 18 C 1.38216 * 120.06609 * 0.02650 * 16 15 14 19 19 C 1.50700 * 120.07025 * 179.97438 * 18 16 15 20 20 O 1.42900 * 109.47347 * 296.15463 * 19 18 16 21 21 Si 1.86308 * 109.47258 * 56.15688 * 19 18 16 22 22 H 1.48496 * 109.46877 * 53.60243 * 21 19 18 23 23 H 1.48500 * 109.46879 * 173.60233 * 21 19 18 24 24 H 1.48497 * 109.46965 * 293.60177 * 21 19 18 25 25 C 1.39327 * 119.76150 * 0.49177 * 11 10 9 26 26 C 1.38023 * 119.87884 * 359.73883 * 25 11 10 27 27 H 1.08998 * 109.46780 * 300.00626 * 1 2 3 28 28 H 1.09005 * 109.46958 * 60.00057 * 1 2 3 29 29 H 1.08988 * 109.47515 * 180.02562 * 1 2 3 30 30 H 1.08007 * 120.00026 * 359.97438 * 5 3 2 31 31 H 1.07995 * 119.93850 * 359.95792 * 9 8 6 32 32 H 1.08000 * 120.05523 * 179.72984 * 10 9 8 33 33 H 1.08003 * 120.03674 * 359.97438 * 13 12 11 34 34 H 1.08002 * 119.91970 * 180.20848 * 14 13 12 35 35 H 1.08006 * 119.88715 * 179.72233 * 15 14 13 36 36 H 1.09000 * 109.47143 * 176.15668 * 19 18 16 37 37 H 0.96703 * 114.00474 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.06601 * 179.76764 * 25 11 10 39 39 H 1.07994 * 119.93853 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0431 1.2051 0.0000 4 8 1.3799 2.2264 -0.0005 5 6 3.4413 1.2783 0.0005 6 16 4.1467 2.6624 -0.0001 7 8 3.9192 3.1620 -1.4196 8 6 5.8563 2.2361 0.0017 9 6 6.7758 3.0777 0.6014 10 6 8.1167 2.7509 0.6014 11 6 8.5424 1.5659 0.0048 12 6 9.9823 1.2069 0.0062 13 6 10.3990 -0.0085 0.5451 14 6 11.7389 -0.3407 0.5406 15 6 12.6694 0.5344 0.0116 16 6 12.2623 1.7469 -0.5217 17 9 13.1761 2.5983 -1.0368 18 6 10.9225 2.0864 -0.5261 19 6 10.4797 3.4053 -1.1055 20 8 11.0320 4.4739 -0.3341 21 14 11.0721 3.5401 -2.8667 22 1 10.6261 2.3479 -3.6315 23 1 10.5071 4.7656 -3.4865 24 1 12.5551 3.6142 -2.8859 25 6 7.6120 0.7220 -0.5979 26 6 6.2740 1.0608 -0.5963 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 4.0295 0.3724 0.0014 31 1 6.4443 3.9942 1.0665 32 1 8.8343 3.4109 1.0661 33 1 9.6741 -0.6913 0.9632 34 1 12.0614 -1.2843 0.9553 35 1 13.7172 0.2722 0.0143 36 1 9.3916 3.4652 -1.0825 37 1 10.7883 5.3545 -0.6508 38 1 7.9370 -0.1959 -1.0652 39 1 5.5519 0.4072 -1.0629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13569790_11652898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:26:17 Heat of formation + Delta-G solvation = -220.359204 kcal Electronic energy + Delta-G solvation = -27771.159073 eV Core-core repulsion = 23455.341624 eV Total energy + Delta-G solvation = -4315.817449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 351.071 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.03187 -41.06280 -40.67200 -39.21776 -37.63282 -36.91125 -34.09810 -33.84405 -32.42705 -32.00754 -30.75082 -30.01372 -27.77752 -26.95797 -24.78815 -23.64481 -22.68271 -22.12747 -21.86975 -19.12198 -18.61185 -18.54969 -18.06006 -17.82989 -17.07217 -16.96979 -16.91944 -16.64258 -16.58079 -16.01774 -15.90329 -15.61354 -15.26037 -14.89746 -14.72805 -14.54793 -14.37853 -14.33490 -14.04658 -13.73472 -13.59142 -13.42568 -13.10111 -12.98790 -12.64711 -12.60903 -12.57514 -12.36009 -12.22075 -12.02659 -11.52044 -11.45413 -10.98721 -10.65681 -10.58518 -10.26592 -9.88477 -9.63558 -9.44868 -9.25339 -8.00848 -0.29524 0.05648 0.38925 0.43659 1.05617 1.31173 1.41534 1.64190 1.80618 2.22423 2.44049 2.65774 2.80728 3.11168 3.13976 3.30193 3.56546 3.74370 3.92579 3.95075 4.04060 4.10522 4.26261 4.33078 4.35056 4.42438 4.45633 4.47257 4.56060 4.58787 4.69889 4.79523 4.92691 5.07354 5.12176 5.24326 5.24649 5.27121 5.36739 5.41734 5.48982 5.52043 5.83723 5.97799 6.08534 6.74205 7.57788 Molecular weight = 351.07amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.002785 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.860613 B =10053.229997 C =10849.331923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.396 6.396 3 C 0.518 3.482 4 O -0.644 6.644 5 C -1.050 5.050 6 S 1.501 4.499 7 O -1.006 7.006 8 C -0.430 4.430 9 C -0.054 4.054 10 C -0.109 4.109 11 C -0.039 4.039 12 C -0.015 4.015 13 C -0.117 4.117 14 C -0.075 4.075 15 C -0.149 4.149 16 C 0.091 3.909 17 F -0.136 7.136 18 C -0.115 4.115 19 C -0.084 4.084 20 O -0.546 6.546 21 Si 0.948 3.052 22 H -0.275 1.275 23 H -0.245 1.245 24 H -0.241 1.241 25 C -0.120 4.120 26 C -0.089 4.089 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.169 0.831 32 H 0.156 0.844 33 H 0.146 0.854 34 H 0.173 0.827 35 H 0.164 0.836 36 H 0.083 0.917 37 H 0.398 0.602 38 H 0.137 0.863 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.305 -1.394 6.026 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.315 6.315 3 C 0.384 3.616 4 O -0.551 6.551 5 C -1.177 5.177 6 S 1.707 4.293 7 O -1.002 7.002 8 C -0.527 4.527 9 C -0.073 4.073 10 C -0.127 4.127 11 C -0.039 4.039 12 C -0.016 4.016 13 C -0.135 4.135 14 C -0.093 4.093 15 C -0.167 4.167 16 C 0.071 3.929 17 F -0.115 7.115 18 C -0.116 4.116 19 C -0.194 4.194 20 O -0.355 6.355 21 Si 0.770 3.230 22 H -0.199 1.199 23 H -0.168 1.168 24 H -0.163 1.163 25 C -0.139 4.139 26 C -0.108 4.108 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.187 0.813 32 H 0.174 0.826 33 H 0.164 0.836 34 H 0.190 0.810 35 H 0.181 0.819 36 H 0.101 0.899 37 H 0.248 0.752 38 H 0.155 0.845 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 21.264 -0.721 5.449 21.963 hybrid contribution -0.569 -1.725 -1.958 2.671 sum 20.695 -2.446 3.490 21.129 Atomic orbital electron populations 1.22833 0.78100 1.04081 1.00959 1.86208 1.23063 1.34913 1.87318 1.18225 0.88633 0.80240 0.74465 1.90637 1.68258 1.35863 1.60351 1.26848 0.99955 1.20494 1.70376 1.65512 0.76818 0.83618 1.03388 1.94402 1.85323 1.80582 1.39925 1.28060 1.19693 1.00781 1.04175 1.21143 0.91839 0.98776 0.95563 1.21590 0.95858 0.96055 0.99231 1.18854 0.91461 0.95224 0.98370 1.18468 0.90587 0.94810 0.97709 1.21564 0.97532 0.95185 0.99194 1.21361 0.91260 1.00161 0.96523 1.21549 1.02877 0.92203 1.00083 1.17649 0.85436 0.89960 0.99817 1.91458 1.65706 1.70012 1.84316 1.19403 0.92126 0.96560 1.03469 1.24598 1.01757 0.86892 1.06110 1.86442 1.75434 1.17176 1.56415 0.85832 0.81271 0.81372 0.74544 1.19945 1.16839 1.16329 1.21323 0.91793 1.00345 1.00425 1.21080 0.96282 0.96306 0.97096 0.92912 0.94669 0.85537 0.87270 0.81327 0.82609 0.83611 0.80980 0.81890 0.89900 0.75185 0.84509 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.44 10.45 113.37 1.19 2.63 16 2 O -0.40 -21.49 10.47 -61.82 -0.65 -22.14 16 3 C 0.52 31.83 7.63 68.25 0.52 32.35 16 4 O -0.64 -41.41 16.06 18.93 0.30 -41.11 16 5 C -1.05 -61.62 8.46 68.25 0.58 -61.04 16 6 S 1.50 77.21 12.77 -56.49 -0.72 76.49 16 7 O -1.01 -67.45 18.25 -148.98 -2.72 -70.17 16 8 C -0.43 -18.23 5.68 22.31 0.13 -18.10 16 9 C -0.05 -1.72 9.74 22.24 0.22 -1.51 16 10 C -0.11 -3.02 7.58 22.48 0.17 -2.84 16 11 C -0.04 -1.13 4.62 -20.04 -0.09 -1.22 16 12 C -0.02 -0.38 5.40 -20.05 -0.11 -0.49 16 13 C -0.12 -2.23 9.62 22.49 0.22 -2.01 16 14 C -0.08 -1.08 10.03 22.23 0.22 -0.85 16 15 C -0.15 -2.44 10.02 22.35 0.22 -2.22 16 16 C 0.09 2.04 6.61 22.34 0.15 2.19 16 17 F -0.14 -3.31 13.98 44.97 0.63 -2.68 16 18 C -0.11 -2.81 4.61 -19.61 -0.09 -2.90 16 19 C -0.08 -1.95 2.00 71.24 0.14 -1.81 16 20 O -0.55 -11.04 12.67 -148.98 -1.89 -12.93 16 21 Si 0.95 21.96 26.39 68.60 1.81 23.77 16 22 H -0.27 -7.45 7.11 99.48 0.71 -6.74 16 23 H -0.25 -5.39 7.11 99.48 0.71 -4.68 16 24 H -0.24 -5.63 6.08 99.48 0.60 -5.03 16 25 C -0.12 -4.03 9.62 22.48 0.22 -3.81 16 26 C -0.09 -3.79 8.92 22.24 0.20 -3.59 16 27 H 0.05 2.07 8.13 -2.39 -0.02 2.05 16 28 H 0.03 1.48 8.13 -2.38 -0.02 1.46 16 29 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 30 H 0.11 6.34 6.08 -7.37 -0.04 6.30 16 31 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.16 3.50 7.73 -2.91 -0.02 3.48 16 33 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.08 2.05 4.94 -2.39 -0.01 2.04 16 37 H 0.40 4.48 8.74 -74.06 -0.65 3.84 16 38 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 39 H 0.09 4.46 6.48 -2.91 -0.02 4.44 16 Total: -1.00 -91.54 350.55 1.74 -89.80 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 1.10 Total: 24.19 kcal Atomic # 6 Polarization: -69.11 SS G_CDS: 3.87 Total: -65.23 kcal Atomic # 8 Polarization: -141.39 SS G_CDS: -4.95 Total: -146.34 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.63 Total: -2.68 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: 1.81 Total: 23.77 kcal Atomic # 16 Polarization: 77.21 SS G_CDS: -0.72 Total: 76.49 kcal Total: -91.54 1.74 -89.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13569790_11652898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.562 kcal (2) G-P(sol) polarization free energy of solvation -91.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds