Wall clock time and date at job start Mon Mar 8 2021 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46723 * 2 1 4 4 C 1.52995 * 109.46899 * 240.00325 * 2 1 3 5 5 Si 1.86297 * 109.47270 * 120.00024 * 2 1 3 6 6 C 1.86302 * 109.46857 * 300.00062 * 5 2 1 7 7 C 1.86296 * 109.47149 * 180.02562 * 5 2 1 8 8 O 1.63100 * 109.47106 * 60.00187 * 5 2 1 9 9 C 1.42902 * 113.99961 * 180.02562 * 8 5 2 10 10 C 1.50699 * 109.47160 * 179.97438 * 9 8 5 11 11 C 1.33725 * 122.07707 * 359.97438 * 10 9 8 12 12 S 1.76251 * 108.21692 * 180.02562 * 11 10 9 13 13 C 1.76172 * 89.83626 * 0.02562 * 12 11 10 14 14 C 1.47878 * 125.47236 * 180.02562 * 13 12 11 15 15 C 1.39531 * 120.13121 * 185.27870 * 14 13 12 16 16 C 1.38000 * 119.90525 * 180.02562 * 15 14 13 17 17 C 1.38293 * 120.17101 * 359.97438 * 16 15 14 18 18 C 1.38594 * 120.26088 * 359.74822 * 17 16 15 19 19 F 1.35105 * 119.95440 * 180.27498 * 18 17 16 20 20 C 1.38184 * 120.09080 * 0.50737 * 18 17 16 21 21 C 1.50697 * 120.08377 * 179.77183 * 20 18 17 22 22 O 1.42908 * 109.47032 * 252.17679 * 21 20 18 23 23 Si 1.86302 * 109.47392 * 12.17476 * 21 20 18 24 24 H 1.48503 * 109.47222 * 291.97495 * 23 21 20 25 25 H 1.48502 * 109.46810 * 51.97401 * 23 21 20 26 26 H 1.48496 * 109.47159 * 171.97754 * 23 21 20 27 27 N 1.30220 * 109.05593 * 0.26041 * 13 12 11 28 28 H 1.08995 * 109.47107 * 299.99679 * 1 2 3 29 29 H 1.08997 * 109.47363 * 60.00201 * 1 2 3 30 30 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46770 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47037 * 299.99998 * 3 2 1 33 33 H 1.08995 * 109.47067 * 60.00296 * 3 2 1 34 34 H 1.08996 * 109.47514 * 299.99337 * 4 2 1 35 35 H 1.08997 * 109.47542 * 59.99584 * 4 2 1 36 36 H 1.09006 * 109.46975 * 180.02562 * 4 2 1 37 37 H 1.09009 * 109.46868 * 179.97438 * 6 5 2 38 38 H 1.08997 * 109.47391 * 299.99819 * 6 5 2 39 39 H 1.08997 * 109.47226 * 60.00712 * 6 5 2 40 40 H 1.08995 * 109.46969 * 300.00138 * 7 5 2 41 41 H 1.09009 * 109.47135 * 59.99625 * 7 5 2 42 42 H 1.08997 * 109.47241 * 179.97438 * 7 5 2 43 43 H 1.08999 * 109.47399 * 59.99743 * 9 8 5 44 44 H 1.09003 * 109.46849 * 299.99751 * 9 8 5 45 45 H 1.08008 * 125.88921 * 0.04612 * 11 10 9 46 46 H 1.07997 * 120.04327 * 0.03636 * 15 14 13 47 47 H 1.07993 * 119.91315 * 180.02562 * 16 15 14 48 48 H 1.07995 * 119.86997 * 180.02562 * 17 16 15 49 49 H 1.08995 * 109.47290 * 132.17565 * 21 20 18 50 50 H 0.96698 * 113.99724 * 59.99556 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8782 1.5211 6 6 1.5300 0.0001 3.0422 7 6 4.0140 -0.8775 1.5214 8 8 1.6075 -2.4160 1.5211 9 6 2.0287 -3.1814 2.6519 10 6 1.4714 -4.5777 2.5492 11 6 0.7060 -4.9631 1.5226 12 16 0.2600 -6.6501 1.7708 13 6 1.1755 -6.6655 3.2758 14 6 1.3189 -7.8259 4.1812 15 6 1.9799 -7.6844 5.4019 16 6 2.1115 -8.7705 6.2430 17 6 1.5895 -9.9985 5.8793 18 6 0.9266 -10.1455 4.6711 19 9 0.4143 -11.3466 4.3246 20 6 0.7932 -9.0665 3.8183 21 6 0.0769 -9.2278 2.5023 22 8 1.0268 -9.1909 1.4353 23 14 -0.8197 -10.8607 2.4793 24 1 0.1692 -11.9682 2.4534 25 1 -1.6637 -10.9790 3.6954 26 1 -1.6794 -10.9364 1.2708 27 7 1.7015 -5.4895 3.4656 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.8931 -0.5141 3.9323 38 1 1.8933 1.0277 3.0422 39 1 0.4401 -0.0001 3.0423 40 1 4.3777 -1.3910 0.6315 41 1 4.3770 0.1504 1.5216 42 1 4.3774 -1.3909 2.4116 43 1 1.6639 -2.7113 3.5652 44 1 3.1176 -3.2251 2.6758 45 1 0.4121 -4.3470 0.6856 46 1 2.3877 -6.7262 5.6880 47 1 2.6227 -8.6611 7.1879 48 1 1.6949 -10.8451 6.5415 49 1 -0.6411 -8.4173 2.3777 50 1 1.6979 -9.8856 1.4820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_13569790_12621894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:21:27 Heat of formation + Delta-G solvation = -84.430282 kcal Electronic energy + Delta-G solvation = -30984.639021 eV Core-core repulsion = 26756.287067 eV Total energy + Delta-G solvation = -4228.351953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 383.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.08646 -41.07739 -40.24177 -37.90468 -37.74503 -36.87208 -33.67017 -32.45912 -30.53455 -29.50719 -29.11637 -27.95001 -27.88998 -27.41080 -27.29390 -25.93818 -23.27849 -22.74770 -20.58694 -20.33132 -19.44224 -18.74673 -18.55284 -17.92004 -17.57860 -17.14112 -16.85653 -16.62137 -16.56897 -16.11860 -16.01555 -15.72878 -15.32500 -15.16123 -15.02865 -14.87493 -14.73398 -14.18739 -14.06293 -13.92942 -13.78395 -13.64008 -13.52597 -13.42126 -13.37901 -13.26084 -13.14525 -12.96158 -12.95958 -12.51501 -12.44511 -12.09719 -12.03291 -11.83589 -11.66005 -11.64581 -11.38616 -10.92036 -10.83491 -10.77540 -10.59921 -10.42248 -10.11271 -10.09085 -9.94730 -9.13341 -0.83439 -0.17852 0.38063 0.44967 0.82451 1.09267 1.31501 1.49721 1.70152 1.70860 1.82004 1.90847 2.02014 2.33198 2.43182 2.62305 3.09302 3.18366 3.30734 3.68187 3.78280 3.91338 4.05442 4.08451 4.08672 4.18369 4.21864 4.34669 4.39905 4.43585 4.48279 4.60610 4.64566 4.65836 4.70982 4.71338 4.74451 4.78651 4.80646 4.82552 4.96812 5.01429 5.07289 5.07633 5.10542 5.15992 5.21977 5.31558 5.38874 5.39129 5.46301 5.52606 5.53513 5.57851 6.34055 6.76089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.293 2.707 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.626 6.626 9 C 0.164 3.836 10 C 0.047 3.953 11 C -0.237 4.237 12 S 0.170 5.830 13 C 0.085 3.915 14 C 0.035 3.965 15 C -0.081 4.081 16 C -0.083 4.083 17 C -0.129 4.129 18 C 0.089 3.911 19 F -0.111 7.111 20 C -0.139 4.139 21 C -0.108 4.108 22 O -0.520 6.520 23 Si 1.042 2.958 24 H -0.278 1.278 25 H -0.278 1.278 26 H -0.285 1.285 27 N -0.452 5.452 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.185 0.815 46 H 0.147 0.853 47 H 0.146 0.854 48 H 0.146 0.854 49 H 0.123 0.877 50 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 0.190 2.186 2.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.425 2.575 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.584 6.584 9 C 0.086 3.914 10 C -0.085 4.085 11 C -0.376 4.376 12 S 0.429 5.571 13 C -0.188 4.188 14 C 0.032 3.968 15 C -0.102 4.102 16 C -0.102 4.102 17 C -0.148 4.148 18 C 0.070 3.930 19 F -0.090 7.090 20 C -0.143 4.143 21 C -0.218 4.218 22 O -0.326 6.326 23 Si 0.873 3.127 24 H -0.205 1.205 25 H -0.204 1.204 26 H -0.214 1.214 27 N -0.167 5.167 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.202 0.798 46 H 0.165 0.835 47 H 0.163 0.837 48 H 0.164 0.836 49 H 0.140 0.860 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.157 -0.846 1.645 1.857 hybrid contribution 1.107 1.147 0.364 1.635 sum 0.950 0.301 2.010 2.243 Atomic orbital electron populations 1.21513 0.93795 1.01971 1.01839 1.25777 1.00681 1.02659 1.12633 1.21553 1.00809 0.94849 1.02182 1.21513 1.00663 1.00189 0.96762 0.76619 0.63026 0.52856 0.65035 1.27037 1.07057 1.09529 1.17767 1.27037 1.24957 1.04807 1.04602 1.85235 1.79565 1.46148 1.47476 1.20130 0.97830 0.86355 0.87119 1.19727 1.01059 0.96212 0.91533 1.27499 1.04536 1.00724 1.04812 1.85682 1.47463 1.04749 1.19220 1.25304 1.01939 0.94199 0.97394 1.17329 0.98159 0.88395 0.92950 1.21466 0.96559 1.00277 0.91920 1.21129 0.97826 0.91182 1.00025 1.21314 0.98545 0.99899 0.95091 1.17395 1.00016 0.79876 0.95695 1.90659 1.84096 1.44251 1.90002 1.20185 1.03538 0.92667 0.97888 1.25298 0.96765 1.14854 0.84908 1.86686 1.43741 1.57091 1.45109 0.84399 0.77911 0.72669 0.77749 1.20497 1.20445 1.21430 1.66037 1.22011 0.99642 1.29046 0.92663 0.92776 0.92219 0.92481 0.92469 0.92488 0.92208 0.92770 0.92659 0.91352 0.90632 0.90832 0.90816 0.90639 0.91350 0.90713 0.90718 0.79792 0.83480 0.83669 0.83589 0.85977 0.77457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.03 7.85 37.16 0.29 0.32 16 2 C -0.37 0.21 0.53 -90.62 -0.05 0.16 16 3 C -0.14 0.11 7.85 37.16 0.29 0.40 16 4 C -0.13 0.02 7.85 37.16 0.29 0.31 16 5 Si 1.29 -1.57 8.45 -169.99 -1.44 -3.00 16 6 C -0.51 0.41 8.50 101.05 0.86 1.27 16 7 C -0.51 0.37 8.50 101.05 0.86 1.23 16 8 O -0.63 -0.18 7.41 -35.23 -0.26 -0.44 16 9 C 0.16 0.10 5.72 36.00 0.21 0.31 16 10 C 0.05 0.12 6.69 -84.40 -0.56 -0.44 16 11 C -0.24 -0.50 10.52 29.15 0.31 -0.19 16 12 S 0.17 0.28 17.12 -107.50 -1.84 -1.56 16 13 C 0.09 0.21 7.25 -14.29 -0.10 0.11 16 14 C 0.04 0.04 5.87 -104.99 -0.62 -0.58 16 15 C -0.08 0.03 9.68 -39.19 -0.38 -0.35 16 16 C -0.08 0.17 10.03 -39.65 -0.40 -0.23 16 17 C -0.13 0.18 10.02 -39.43 -0.40 -0.21 16 18 C 0.09 0.02 6.83 -39.47 -0.27 -0.25 16 19 F -0.11 -0.14 10.84 2.25 0.02 -0.11 16 20 C -0.14 -0.08 5.32 -104.16 -0.55 -0.64 16 21 C -0.11 -0.03 1.62 36.00 0.06 0.03 16 22 O -0.52 0.04 10.81 -35.23 -0.38 -0.34 16 23 Si 1.04 1.05 23.92 -169.99 -4.07 -3.01 16 24 H -0.28 -0.41 6.48 56.52 0.37 -0.05 16 25 H -0.28 -0.55 6.97 56.52 0.39 -0.16 16 26 H -0.29 -0.59 7.11 56.52 0.40 -0.19 16 27 N -0.45 -1.42 10.12 -7.55 -0.08 -1.50 16 28 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 29 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.06 -0.01 7.97 -51.93 -0.41 -0.42 16 31 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 32 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 33 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 34 H 0.06 0.00 7.96 -51.93 -0.41 -0.42 16 35 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 36 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 37 H 0.07 -0.07 7.48 -51.92 -0.39 -0.46 16 38 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 39 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 40 H 0.07 -0.03 7.79 -51.93 -0.40 -0.43 16 41 H 0.07 -0.08 7.79 -51.92 -0.40 -0.48 16 42 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 43 H 0.08 -0.04 7.21 -51.93 -0.37 -0.42 16 44 H 0.07 -0.03 7.22 -51.93 -0.37 -0.41 16 45 H 0.18 0.18 7.51 -52.48 -0.39 -0.22 16 46 H 0.15 -0.12 7.83 -52.49 -0.41 -0.53 16 47 H 0.15 -0.65 8.06 -52.49 -0.42 -1.08 16 48 H 0.15 -0.50 8.06 -52.49 -0.42 -0.92 16 49 H 0.12 0.00 5.04 -28.15 -0.14 -0.14 16 50 H 0.38 -1.19 8.70 45.56 0.40 -0.79 16 LS Contribution 407.12 15.07 6.14 6.14 Total: 0.00 -5.02 407.12 -9.16 -14.18 By element: Atomic # 1 Polarization: -4.52 SS G_CDS: -7.09 Total: -11.62 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.17 Total: 1.26 kcal Atomic # 7 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Atomic # 8 Polarization: -0.14 SS G_CDS: -0.64 Total: -0.78 kcal Atomic # 9 Polarization: -0.14 SS G_CDS: 0.02 Total: -0.11 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: -5.50 Total: -6.02 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.84 Total: -1.56 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -5.02 -9.16 -14.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13569790_12621894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.250 kcal (2) G-P(sol) polarization free energy of solvation -5.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds