Wall clock time and date at job start Mon Mar 8 2021 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46723 * 2 1 4 4 C 1.52995 * 109.46899 * 240.00325 * 2 1 3 5 5 Si 1.86297 * 109.47270 * 120.00024 * 2 1 3 6 6 C 1.86302 * 109.46857 * 300.00062 * 5 2 1 7 7 C 1.86296 * 109.47149 * 180.02562 * 5 2 1 8 8 O 1.63100 * 109.47106 * 60.00187 * 5 2 1 9 9 C 1.42902 * 113.99961 * 180.02562 * 8 5 2 10 10 C 1.50699 * 109.47160 * 179.97438 * 9 8 5 11 11 C 1.33725 * 122.07707 * 359.97438 * 10 9 8 12 12 S 1.76251 * 108.21692 * 180.02562 * 11 10 9 13 13 C 1.76172 * 89.83626 * 0.02562 * 12 11 10 14 14 C 1.47878 * 125.47236 * 180.02562 * 13 12 11 15 15 C 1.39531 * 120.13121 * 185.27870 * 14 13 12 16 16 C 1.38000 * 119.90525 * 180.02562 * 15 14 13 17 17 C 1.38293 * 120.17101 * 359.97438 * 16 15 14 18 18 C 1.38594 * 120.26088 * 359.74822 * 17 16 15 19 19 F 1.35105 * 119.95440 * 180.27498 * 18 17 16 20 20 C 1.38184 * 120.09080 * 0.50737 * 18 17 16 21 21 C 1.50697 * 120.08377 * 179.77183 * 20 18 17 22 22 O 1.42908 * 109.47032 * 252.17679 * 21 20 18 23 23 Si 1.86302 * 109.47392 * 12.17476 * 21 20 18 24 24 H 1.48503 * 109.47222 * 291.97495 * 23 21 20 25 25 H 1.48502 * 109.46810 * 51.97401 * 23 21 20 26 26 H 1.48496 * 109.47159 * 171.97754 * 23 21 20 27 27 N 1.30220 * 109.05593 * 0.26041 * 13 12 11 28 28 H 1.08995 * 109.47107 * 299.99679 * 1 2 3 29 29 H 1.08997 * 109.47363 * 60.00201 * 1 2 3 30 30 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46770 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47037 * 299.99998 * 3 2 1 33 33 H 1.08995 * 109.47067 * 60.00296 * 3 2 1 34 34 H 1.08996 * 109.47514 * 299.99337 * 4 2 1 35 35 H 1.08997 * 109.47542 * 59.99584 * 4 2 1 36 36 H 1.09006 * 109.46975 * 180.02562 * 4 2 1 37 37 H 1.09009 * 109.46868 * 179.97438 * 6 5 2 38 38 H 1.08997 * 109.47391 * 299.99819 * 6 5 2 39 39 H 1.08997 * 109.47226 * 60.00712 * 6 5 2 40 40 H 1.08995 * 109.46969 * 300.00138 * 7 5 2 41 41 H 1.09009 * 109.47135 * 59.99625 * 7 5 2 42 42 H 1.08997 * 109.47241 * 179.97438 * 7 5 2 43 43 H 1.08999 * 109.47399 * 59.99743 * 9 8 5 44 44 H 1.09003 * 109.46849 * 299.99751 * 9 8 5 45 45 H 1.08008 * 125.88921 * 0.04612 * 11 10 9 46 46 H 1.07997 * 120.04327 * 0.03636 * 15 14 13 47 47 H 1.07993 * 119.91315 * 180.02562 * 16 15 14 48 48 H 1.07995 * 119.86997 * 180.02562 * 17 16 15 49 49 H 1.08995 * 109.47290 * 132.17565 * 21 20 18 50 50 H 0.96698 * 113.99724 * 59.99556 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8782 1.5211 6 6 1.5300 0.0001 3.0422 7 6 4.0140 -0.8775 1.5214 8 8 1.6075 -2.4160 1.5211 9 6 2.0287 -3.1814 2.6519 10 6 1.4714 -4.5777 2.5492 11 6 0.7060 -4.9631 1.5226 12 16 0.2600 -6.6501 1.7708 13 6 1.1755 -6.6655 3.2758 14 6 1.3189 -7.8259 4.1812 15 6 1.9799 -7.6844 5.4019 16 6 2.1115 -8.7705 6.2430 17 6 1.5895 -9.9985 5.8793 18 6 0.9266 -10.1455 4.6711 19 9 0.4143 -11.3466 4.3246 20 6 0.7932 -9.0665 3.8183 21 6 0.0769 -9.2278 2.5023 22 8 1.0268 -9.1909 1.4353 23 14 -0.8197 -10.8607 2.4793 24 1 0.1692 -11.9682 2.4534 25 1 -1.6637 -10.9790 3.6954 26 1 -1.6794 -10.9364 1.2708 27 7 1.7015 -5.4895 3.4656 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.8931 -0.5141 3.9323 38 1 1.8933 1.0277 3.0422 39 1 0.4401 -0.0001 3.0423 40 1 4.3777 -1.3910 0.6315 41 1 4.3770 0.1504 1.5216 42 1 4.3774 -1.3909 2.4116 43 1 1.6639 -2.7113 3.5652 44 1 3.1176 -3.2251 2.6758 45 1 0.4121 -4.3470 0.6856 46 1 2.3877 -6.7262 5.6880 47 1 2.6227 -8.6611 7.1879 48 1 1.6949 -10.8451 6.5415 49 1 -0.6411 -8.4173 2.3777 50 1 1.6979 -9.8856 1.4820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13569790_12621894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:21:26 Heat of formation + Delta-G solvation = -75.909985 kcal Electronic energy + Delta-G solvation = -30984.269553 eV Core-core repulsion = 26756.287067 eV Total energy + Delta-G solvation = -4227.982486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 383.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.11707 -41.11435 -40.25600 -37.88850 -37.73469 -36.82618 -33.64540 -32.43628 -30.55541 -29.43713 -29.05541 -28.00176 -27.82907 -27.37031 -27.27603 -25.94465 -23.27785 -22.72705 -20.60996 -20.33689 -19.46966 -18.78696 -18.55075 -17.91560 -17.60468 -17.13490 -16.82893 -16.67702 -16.59005 -16.12777 -15.98591 -15.69278 -15.31766 -15.16901 -15.06193 -14.83105 -14.70524 -14.25912 -14.03424 -13.96804 -13.76606 -13.59664 -13.48043 -13.35235 -13.32004 -13.17531 -13.07055 -12.94520 -12.91008 -12.50250 -12.39585 -12.17469 -12.01631 -11.84480 -11.66300 -11.60768 -11.39092 -11.03178 -10.90090 -10.79612 -10.68837 -10.37343 -10.07601 -10.06253 -9.99326 -9.19117 -0.87070 -0.12573 0.32747 0.38162 0.72725 1.01660 1.37175 1.38875 1.59051 1.74008 1.77668 1.78287 2.11834 2.38133 2.46761 2.63141 3.11900 3.21024 3.34736 3.70928 3.87711 3.94983 4.12392 4.13368 4.15488 4.21290 4.23663 4.29928 4.42176 4.47315 4.53886 4.57565 4.66017 4.75087 4.78647 4.78895 4.80189 4.83968 4.84097 4.92438 5.01307 5.04863 5.10405 5.10768 5.14474 5.23305 5.25231 5.35017 5.41431 5.42214 5.48170 5.60511 5.63680 5.65324 6.50156 6.64210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.379 4.379 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.323 2.677 6 C -0.519 4.519 7 C -0.519 4.519 8 O -0.635 6.635 9 C 0.159 3.841 10 C 0.034 3.966 11 C -0.249 4.249 12 S 0.172 5.828 13 C 0.081 3.919 14 C 0.016 3.984 15 C -0.083 4.083 16 C -0.074 4.074 17 C -0.122 4.122 18 C 0.073 3.927 19 F -0.119 7.119 20 C -0.142 4.142 21 C -0.100 4.100 22 O -0.528 6.528 23 Si 1.063 2.937 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.303 1.303 27 N -0.467 5.467 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.190 0.810 46 H 0.151 0.849 47 H 0.176 0.824 48 H 0.169 0.831 49 H 0.123 0.877 50 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.997 0.238 3.458 4.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.422 4.422 3 C -0.198 4.198 4 C -0.195 4.195 5 Si 1.454 2.546 6 C -0.620 4.620 7 C -0.621 4.621 8 O -0.594 6.594 9 C 0.081 3.919 10 C -0.098 4.098 11 C -0.388 4.388 12 S 0.431 5.569 13 C -0.193 4.193 14 C 0.012 3.988 15 C -0.104 4.104 16 C -0.092 4.092 17 C -0.141 4.141 18 C 0.054 3.946 19 F -0.098 7.098 20 C -0.146 4.146 21 C -0.211 4.211 22 O -0.336 6.336 23 Si 0.898 3.102 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.233 1.233 27 N -0.183 5.183 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.208 0.792 46 H 0.168 0.832 47 H 0.194 0.806 48 H 0.186 0.814 49 H 0.139 0.861 50 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.732 -0.799 2.906 3.102 hybrid contribution 0.836 1.081 -0.005 1.367 sum 1.569 0.282 2.901 3.310 Atomic orbital electron populations 1.21547 0.94217 1.01814 1.01863 1.25881 1.00394 1.03004 1.12921 1.21604 1.01320 0.94632 1.02269 1.21546 1.01021 1.00026 0.96859 0.76092 0.62393 0.51974 0.64182 1.27101 1.06898 1.09958 1.18075 1.27110 1.25301 1.05118 1.04560 1.85224 1.79843 1.46735 1.47556 1.20261 0.98384 0.85625 0.87618 1.20082 1.01157 0.97018 0.91527 1.27634 1.04935 1.01064 1.05164 1.85621 1.47437 1.04667 1.19157 1.25616 1.01561 0.94483 0.97644 1.17428 0.99563 0.88139 0.93652 1.21636 0.96100 1.01083 0.91585 1.21453 0.96949 0.90166 1.00633 1.21639 0.97147 1.00901 0.94440 1.17601 1.00924 0.79465 0.96561 1.90604 1.84352 1.44724 1.90148 1.20160 1.03710 0.92780 0.97959 1.25149 0.96820 1.13955 0.85204 1.86652 1.44073 1.57873 1.45020 0.84071 0.77044 0.73026 0.76065 1.21152 1.22022 1.23315 1.66073 1.22723 0.99989 1.29510 0.92098 0.93321 0.92477 0.91780 0.93092 0.91748 0.92501 0.93304 0.92147 0.91031 0.90173 0.91154 0.91214 0.90175 0.91059 0.89594 0.89745 0.79236 0.83176 0.80643 0.81362 0.86056 0.75982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.01 7.85 71.98 0.56 0.55 16 2 C -0.38 0.34 0.53 -10.79 -0.01 0.34 16 3 C -0.14 0.23 7.85 71.98 0.56 0.80 16 4 C -0.14 -0.03 7.85 71.98 0.56 0.53 16 5 Si 1.32 -3.39 8.45 68.60 0.58 -2.81 16 6 C -0.52 1.07 8.50 113.37 0.96 2.03 16 7 C -0.52 0.96 8.50 113.37 0.96 1.93 16 8 O -0.64 -0.49 7.41 -148.98 -1.10 -1.59 16 9 C 0.16 0.22 5.72 71.24 0.41 0.62 16 10 C 0.03 0.20 6.69 41.61 0.28 0.48 16 11 C -0.25 -1.27 10.52 66.79 0.70 -0.57 16 12 S 0.17 0.74 17.12 -56.49 -0.97 -0.22 16 13 C 0.08 0.45 7.25 87.49 0.63 1.08 16 14 C 0.02 0.04 5.87 -20.10 -0.12 -0.08 16 15 C -0.08 0.11 9.68 22.53 0.22 0.33 16 16 C -0.07 0.43 10.03 22.23 0.22 0.65 16 17 C -0.12 0.53 10.02 22.37 0.22 0.75 16 18 C 0.07 0.02 6.83 22.34 0.15 0.18 16 19 F -0.12 -0.32 10.84 44.97 0.49 0.17 16 20 C -0.14 -0.22 5.32 -19.56 -0.10 -0.32 16 21 C -0.10 -0.14 1.62 71.23 0.12 -0.02 16 22 O -0.53 -0.27 10.81 -148.98 -1.61 -1.88 16 23 Si 1.06 3.32 23.92 68.60 1.64 4.96 16 24 H -0.28 -1.08 6.48 99.48 0.64 -0.44 16 25 H -0.29 -1.55 6.97 99.48 0.69 -0.86 16 26 H -0.30 -1.72 7.11 99.48 0.71 -1.01 16 27 N -0.47 -3.19 10.12 -177.80 -1.80 -4.99 16 28 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 29 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.06 0.03 7.97 -2.39 -0.02 0.01 16 31 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 32 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.06 -0.21 7.79 -2.39 -0.02 -0.22 16 34 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 35 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.06 -0.06 7.79 -2.38 -0.02 -0.08 16 37 H 0.07 -0.19 7.48 -2.38 -0.02 -0.20 16 38 H 0.08 -0.24 7.79 -2.39 -0.02 -0.25 16 39 H 0.07 -0.08 7.79 -2.39 -0.02 -0.10 16 40 H 0.07 -0.06 7.79 -2.39 -0.02 -0.08 16 41 H 0.08 -0.22 7.79 -2.38 -0.02 -0.24 16 42 H 0.07 -0.17 7.48 -2.39 -0.02 -0.19 16 43 H 0.09 -0.11 7.21 -2.39 -0.02 -0.13 16 44 H 0.08 -0.09 7.22 -2.39 -0.02 -0.10 16 45 H 0.19 0.56 7.51 -2.91 -0.02 0.54 16 46 H 0.15 -0.33 7.83 -2.91 -0.02 -0.35 16 47 H 0.18 -2.11 8.06 -2.91 -0.02 -2.13 16 48 H 0.17 -1.52 8.06 -2.91 -0.02 -1.55 16 49 H 0.12 0.15 5.04 -17.51 -0.09 0.06 16 50 H 0.39 -2.25 8.70 -74.06 -0.64 -2.89 16 Total: 0.00 -12.06 407.12 4.48 -7.58 By element: Atomic # 1 Polarization: -11.40 SS G_CDS: 0.91 Total: -10.49 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.35 Total: 9.28 kcal Atomic # 7 Polarization: -3.19 SS G_CDS: -1.80 Total: -4.99 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: -2.71 Total: -3.47 kcal Atomic # 9 Polarization: -0.32 SS G_CDS: 0.49 Total: 0.17 kcal Atomic # 14 Polarization: -0.07 SS G_CDS: 2.22 Total: 2.15 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -0.97 Total: -0.22 kcal Total: -12.06 4.48 -7.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13569790_12621894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.329 kcal (2) G-P(sol) polarization free energy of solvation -12.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds