Wall clock time and date at job start Mon Mar 8 2021 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47312 * 2 1 4 4 C 1.50703 * 109.47409 * 120.00500 * 2 1 3 5 5 C 1.38226 * 120.06999 * 294.96951 * 4 2 1 6 6 F 1.35097 * 119.96604 * 0.04553 * 5 4 2 7 7 C 1.38566 * 120.06648 * 180.02562 * 5 4 2 8 8 C 1.38258 * 120.22009 * 0.02562 * 7 5 4 9 9 C 1.38061 * 120.14632 * 359.74070 * 8 7 5 10 10 C 1.39317 * 119.92608 * 0.50889 * 9 8 7 11 11 C 1.48389 * 120.10660 * 179.76820 * 10 9 8 12 12 C 1.39337 * 120.12079 * 303.58682 * 11 10 9 13 13 C 1.38022 * 119.87795 * 179.97438 * 12 11 10 14 14 C 1.38323 * 120.12262 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.87920 * 180.02562 * 14 13 12 16 16 H 1.08994 * 112.90837 * 348.75299 * 15 14 13 17 17 C 1.53780 * 113.61164 * 120.00031 * 15 14 13 18 18 C 1.53780 * 87.08046 * 139.98182 * 17 15 14 19 19 H 1.09001 * 113.61505 * 89.11358 * 18 17 15 20 20 O 1.42895 * 113.61427 * 220.01682 * 18 17 15 21 21 C 1.53777 * 87.08079 * 334.56507 * 18 17 15 22 22 C 1.38324 * 120.24027 * 0.27415 * 14 13 12 23 23 C 1.38023 * 120.12196 * 359.45419 * 22 14 13 24 24 H 0.96698 * 114.00260 * 183.25099 * 1 2 3 25 25 H 1.09005 * 109.46713 * 240.00222 * 2 1 3 26 26 H 1.48506 * 109.99992 * 53.93983 * 3 2 1 27 27 H 1.48500 * 110.00138 * 175.25543 * 3 2 1 28 28 H 1.08000 * 119.88965 * 179.97438 * 7 5 4 29 29 H 1.07995 * 119.92801 * 179.97438 * 8 7 5 30 30 H 1.07995 * 120.03116 * 180.25734 * 9 8 7 31 31 H 1.08003 * 120.06293 * 359.95618 * 12 11 10 32 32 H 1.08005 * 119.94261 * 180.02562 * 13 12 11 33 33 H 1.09005 * 113.61677 * 254.52617 * 17 15 14 34 34 H 1.08996 * 113.61660 * 25.43409 * 17 15 14 35 35 H 0.96705 * 113.99864 * 179.97438 * 20 18 17 36 36 H 1.09001 * 113.61796 * 270.88407 * 21 18 17 37 37 H 1.08999 * 113.69168 * 139.99111 * 21 18 17 38 38 H 1.08002 * 119.93598 * 179.70173 * 22 14 13 39 39 H 1.07997 * 120.06078 * 180.25402 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.6862 -0.1821 2.4839 6 9 0.9946 0.9719 2.6063 7 6 2.1486 -0.8352 3.6152 8 6 2.8570 -2.0166 3.4960 9 6 3.1028 -2.5548 2.2486 10 6 2.6452 -1.9006 1.1069 11 6 2.9116 -2.4728 -0.2361 12 6 4.2197 -2.7377 -0.6363 13 6 4.4618 -3.2705 -1.8863 14 6 3.4086 -3.5419 -2.7410 15 6 3.6791 -4.1242 -4.1044 16 1 4.7353 -4.1032 -4.3728 17 6 3.0122 -5.4907 -4.3339 18 6 2.6952 -5.0085 -5.7593 19 1 3.4825 -5.2291 -6.4802 20 8 1.3974 -5.3923 -6.2181 21 6 2.7532 -3.5760 -5.2031 22 6 2.1084 -3.2762 -2.3508 23 6 1.8545 -2.7486 -1.1009 24 1 -0.3933 -0.8819 0.0501 25 1 1.7922 -0.5138 -0.8901 26 1 1.4449 2.5091 1.1281 27 1 3.5304 1.7717 0.1154 28 1 1.9558 -0.4196 4.5932 29 1 3.2156 -2.5214 4.3808 30 1 3.6527 -3.4798 2.1579 31 1 5.0428 -2.5263 0.0303 32 1 5.4753 -3.4766 -2.1975 33 1 3.7096 -6.3279 -4.3013 34 1 2.1259 -5.6526 -3.7205 35 1 1.1921 -5.0914 -7.1139 36 1 1.7961 -3.2144 -4.8272 37 1 3.2410 -2.8662 -5.8711 38 1 1.2902 -3.4856 -3.0239 39 1 0.8387 -2.5453 -0.7956 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13569790_13419902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:54:38 Heat of formation + Delta-G solvation = -40.463119 kcal Electronic energy + Delta-G solvation = -24030.005912 eV Core-core repulsion = 20398.427621 eV Total energy + Delta-G solvation = -3631.578291 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.27445 -41.48405 -40.55020 -38.90303 -37.70537 -36.07984 -33.72709 -32.37269 -31.89019 -30.29917 -27.11618 -26.67336 -26.01478 -23.93885 -23.55638 -22.72070 -21.91780 -20.22318 -19.19946 -18.66188 -18.43056 -17.76033 -17.18446 -17.00813 -16.66544 -16.54429 -16.14514 -15.72345 -15.61087 -15.42575 -15.13779 -14.71992 -14.54710 -14.46554 -14.15808 -13.84794 -13.62097 -13.37231 -13.36538 -13.19824 -12.73631 -12.55416 -12.26323 -12.15459 -12.06383 -11.69989 -11.58616 -11.30819 -11.19017 -10.70161 -10.31298 -9.93346 -9.88705 -9.31103 -5.01524 -0.32880 -0.10993 0.40456 0.40574 1.24336 1.49667 1.91209 2.31493 2.66493 2.99589 3.27640 3.32205 3.44750 3.60187 3.65741 3.71054 3.83102 3.86176 3.94708 3.96570 4.02109 4.04338 4.13290 4.17093 4.37499 4.40576 4.48185 4.57734 4.66252 4.73831 4.81373 4.83445 4.91545 4.97904 5.00761 5.03901 5.10344 5.16588 5.19630 5.34048 5.40885 5.50193 5.68046 5.69108 5.95337 6.51854 6.91059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.081 4.081 3 Si 0.788 3.212 4 C -0.159 4.159 5 C 0.079 3.921 6 F -0.141 7.141 7 C -0.159 4.159 8 C -0.077 4.077 9 C -0.116 4.116 10 C -0.009 4.009 11 C -0.071 4.071 12 C -0.105 4.105 13 C -0.116 4.116 14 C -0.065 4.065 15 C -0.070 4.070 16 H 0.117 0.883 17 C -0.125 4.125 18 C 0.073 3.927 19 H 0.099 0.901 20 O -0.583 6.583 21 C -0.160 4.160 22 C -0.118 4.118 23 C -0.104 4.104 24 H 0.375 0.625 25 H 0.097 0.903 26 H -0.283 1.283 27 H -0.278 1.278 28 H 0.151 0.849 29 H 0.168 0.832 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.394 0.606 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.634 -3.282 -3.357 5.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.189 4.189 3 Si 0.690 3.310 4 C -0.160 4.160 5 C 0.060 3.940 6 F -0.120 7.120 7 C -0.178 4.178 8 C -0.094 4.094 9 C -0.134 4.134 10 C -0.009 4.009 11 C -0.071 4.071 12 C -0.123 4.123 13 C -0.134 4.134 14 C -0.065 4.065 15 C -0.088 4.088 16 H 0.135 0.865 17 C -0.163 4.163 18 C 0.015 3.985 19 H 0.117 0.883 20 O -0.391 6.391 21 C -0.198 4.198 22 C -0.136 4.136 23 C -0.122 4.122 24 H 0.224 0.776 25 H 0.114 0.886 26 H -0.210 1.210 27 H -0.204 1.204 28 H 0.169 0.831 29 H 0.186 0.814 30 H 0.172 0.828 31 H 0.153 0.847 32 H 0.162 0.838 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.244 0.756 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.149 0.851 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.088 -2.262 -2.375 5.240 hybrid contribution -0.353 -0.851 0.578 1.087 sum 3.734 -3.113 -1.797 5.183 Atomic orbital electron populations 1.86744 1.16770 1.34334 1.96914 1.25280 0.84943 1.13177 0.95546 0.93205 0.76090 0.75091 0.86604 1.20456 1.03946 0.97353 0.94260 1.17882 0.96750 0.84317 0.95065 1.91449 1.77411 1.46790 1.96339 1.21544 1.00674 0.97533 0.98029 1.21404 0.95318 0.93650 0.99047 1.21650 0.99836 1.00843 0.91053 1.18652 0.96163 0.92315 0.93784 1.18682 0.94330 1.01488 0.92572 1.21352 0.95550 0.98383 0.96996 1.21244 0.99871 0.98885 0.93372 1.19913 0.93133 0.97608 0.95814 1.21362 1.00785 0.95646 0.91020 0.86519 1.23180 1.00571 0.97001 0.95517 1.23462 0.85419 0.94260 0.95392 0.88323 1.86491 1.34282 1.80474 1.37890 1.23794 1.00288 0.97768 0.97914 1.21094 0.97078 0.99336 0.96072 1.21252 0.98577 0.98750 0.93612 0.77647 0.88567 1.20972 1.20396 0.83095 0.81430 0.82768 0.84749 0.83820 0.90031 0.90434 0.75563 0.89564 0.89912 0.85057 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.73 12.55 -148.98 -1.87 -4.60 16 2 C -0.08 -0.38 1.96 71.24 0.14 -0.24 16 3 Si 0.79 4.68 31.29 68.60 2.15 6.83 16 4 C -0.16 -0.92 4.57 -19.61 -0.09 -1.01 16 5 C 0.08 0.64 6.62 22.35 0.15 0.78 16 6 F -0.14 -1.83 13.91 44.97 0.63 -1.21 16 7 C -0.16 -0.47 10.02 22.35 0.22 -0.25 16 8 C -0.08 0.10 10.03 22.23 0.22 0.32 16 9 C -0.12 0.06 9.62 22.49 0.22 0.28 16 10 C -0.01 -0.02 5.40 -20.05 -0.11 -0.13 16 11 C -0.07 -0.09 4.60 -20.04 -0.09 -0.18 16 12 C -0.10 0.04 9.62 22.48 0.22 0.25 16 13 C -0.12 0.20 9.69 22.24 0.22 0.42 16 14 C -0.06 0.08 5.29 -19.82 -0.10 -0.03 16 15 C -0.07 0.26 3.98 -11.01 -0.04 0.22 16 16 H 0.12 -0.77 8.09 -2.39 -0.02 -0.79 16 17 C -0.13 0.23 7.38 31.12 0.23 0.46 16 18 C 0.07 -0.22 5.21 31.12 0.16 -0.05 16 19 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 20 O -0.58 -0.15 13.67 -148.98 -2.04 -2.19 16 21 C -0.16 0.61 7.28 31.12 0.23 0.83 16 22 C -0.12 0.02 8.60 22.24 0.19 0.21 16 23 C -0.10 -0.05 7.62 22.48 0.17 0.12 16 24 H 0.37 -0.35 8.42 -74.06 -0.62 -0.98 16 25 H 0.10 0.21 5.00 -2.38 -0.01 0.19 16 26 H -0.28 -3.76 6.05 99.48 0.60 -3.16 16 27 H -0.28 -2.59 7.11 99.48 0.71 -1.89 16 28 H 0.15 -0.04 8.06 -2.91 -0.02 -0.06 16 29 H 0.17 -1.25 8.06 -2.91 -0.02 -1.27 16 30 H 0.15 -0.72 8.06 -2.91 -0.02 -0.74 16 31 H 0.13 -0.37 8.06 -2.91 -0.02 -0.40 16 32 H 0.14 -0.82 8.05 -2.91 -0.02 -0.84 16 33 H 0.08 -0.25 8.14 -2.38 -0.02 -0.27 16 34 H 0.08 0.11 7.73 -2.39 -0.02 0.09 16 35 H 0.39 -3.06 9.12 -74.05 -0.68 -3.74 16 36 H 0.09 -0.17 6.29 -2.39 -0.02 -0.18 16 37 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.13 -0.17 6.63 -2.91 -0.02 -0.18 16 39 H 0.13 -0.19 7.13 -2.91 -0.02 -0.21 16 Total: 0.00 -15.21 325.18 0.52 -14.69 By element: Atomic # 1 Polarization: -15.27 SS G_CDS: -0.27 Total: -15.54 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 1.92 Total: 2.00 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: -3.91 Total: -6.78 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.63 Total: -1.21 kcal Atomic # 14 Polarization: 4.68 SS G_CDS: 2.15 Total: 6.83 kcal Total: -15.21 0.52 -14.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13569790_13419902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.769 kcal (2) G-P(sol) polarization free energy of solvation -15.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds