Wall clock time and date at job start Mon Mar 8 2021 05:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40073 * 126.14134 * 2 1 4 4 C 1.30888 * 108.50909 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.70079 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.47028 * 179.97438 * 5 4 3 7 7 Si 1.63100 * 113.99849 * 180.02562 * 6 5 4 8 8 C 1.86306 * 109.46998 * 299.99742 * 7 6 5 9 9 C 1.86295 * 109.47376 * 59.99916 * 7 6 5 10 10 C 1.86304 * 109.46827 * 179.97438 * 7 6 5 11 11 C 1.53002 * 109.47259 * 59.99844 * 10 7 6 12 12 C 1.53001 * 109.47082 * 179.97438 * 10 7 6 13 13 C 1.52990 * 109.47299 * 299.99776 * 10 7 6 14 14 C 1.39501 * 108.59516 * 359.75752 * 4 3 2 15 15 C 1.36296 * 126.13865 * 180.02562 * 2 1 3 16 16 C 1.47983 * 126.33685 * 359.97438 * 15 2 1 17 17 C 1.39497 * 120.12330 * 306.18229 * 16 15 2 18 18 C 1.38009 * 119.90660 * 180.27722 * 17 16 15 19 19 C 1.38280 * 120.16574 * 0.02562 * 18 17 16 20 20 C 1.38581 * 120.25477 * 359.97438 * 19 18 17 21 21 F 1.35099 * 119.95739 * 180.02562 * 20 19 18 22 22 C 1.38180 * 120.08668 * 0.02562 * 20 19 18 23 23 C 1.50704 * 120.08470 * 179.97438 * 22 20 19 24 24 O 1.42899 * 109.47073 * 296.46478 * 23 22 20 25 25 Si 1.86308 * 109.46898 * 56.46064 * 23 22 20 26 26 H 1.48497 * 109.46568 * 64.06811 * 25 23 22 27 27 H 1.48502 * 109.47024 * 184.06542 * 25 23 22 28 28 H 1.48499 * 109.47221 * 304.06586 * 25 23 22 29 29 H 1.08996 * 109.47476 * 264.82748 * 1 2 3 30 30 H 1.08999 * 109.47179 * 24.82856 * 1 2 3 31 31 H 1.08997 * 109.47572 * 144.82315 * 1 2 3 32 32 H 1.08991 * 109.47263 * 299.96810 * 5 4 3 33 33 H 1.09003 * 109.47518 * 59.97586 * 5 4 3 34 34 H 1.08996 * 109.46889 * 60.00504 * 8 7 6 35 35 H 1.09001 * 109.46970 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.46928 * 299.99878 * 8 7 6 37 37 H 1.09006 * 109.47263 * 59.99770 * 9 7 6 38 38 H 1.09001 * 109.47196 * 179.97438 * 9 7 6 39 39 H 1.08996 * 109.47381 * 300.00029 * 9 7 6 40 40 H 1.09009 * 109.46935 * 59.99525 * 11 10 7 41 41 H 1.08996 * 109.47520 * 179.97438 * 11 10 7 42 42 H 1.09001 * 109.47149 * 299.99992 * 11 10 7 43 43 H 1.09004 * 109.46746 * 59.99883 * 12 10 7 44 44 H 1.08996 * 109.47144 * 180.02562 * 12 10 7 45 45 H 1.08998 * 109.47357 * 300.00188 * 12 10 7 46 46 H 1.09000 * 109.47419 * 59.99805 * 13 10 7 47 47 H 1.09006 * 109.47396 * 180.02562 * 13 10 7 48 48 H 1.09001 * 109.47352 * 300.00011 * 13 10 7 49 49 H 1.08001 * 126.07216 * 180.25024 * 14 4 3 50 50 H 1.07996 * 120.04094 * 0.25790 * 17 16 15 51 51 H 1.08003 * 119.91265 * 179.97438 * 18 17 16 52 52 H 1.08007 * 119.86767 * 179.97438 * 19 18 17 53 53 H 1.08996 * 109.47291 * 176.46356 * 23 22 20 54 54 H 0.96701 * 114.00479 * 59.99987 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2911 1.1312 0.0000 4 6 3.5385 0.7347 -0.0006 5 6 4.7473 1.6347 -0.0002 6 8 5.9339 0.8384 -0.0004 7 14 7.3150 1.7060 0.0006 8 6 7.3741 2.7811 -1.5199 9 6 7.3733 2.7790 1.5224 10 6 8.7752 0.5490 0.0010 11 6 8.7276 -0.3327 -1.2485 12 6 10.0708 1.3628 0.0013 13 6 8.7264 -0.3334 1.2498 14 6 3.5619 -0.6601 0.0047 15 6 2.2687 -1.1007 -0.0005 16 6 1.8231 -2.5119 -0.0006 17 6 0.9334 -2.9651 0.9735 18 6 0.5253 -4.2835 0.9726 19 6 0.9964 -5.1561 0.0090 20 6 1.8805 -4.7131 -0.9619 21 9 2.3366 -5.5707 -1.9009 22 6 2.2961 -3.3953 -0.9709 23 6 3.2579 -2.9136 -2.0264 24 8 4.5033 -3.5998 -1.8847 25 14 2.5491 -3.2558 -3.7150 26 1 1.3054 -2.4655 -3.8991 27 1 3.5380 -2.8716 -4.7541 28 1 2.2389 -4.7028 -3.8378 29 1 -0.3634 -0.0926 1.0234 30 1 -0.3633 0.9327 -0.4315 31 1 -0.3634 -0.8399 -0.5920 32 1 4.7320 2.2640 -0.8900 33 1 4.7319 2.2635 0.8900 34 1 6.5198 3.4580 -1.5196 35 1 8.2973 3.3606 -1.5194 36 1 7.3401 2.1533 -2.4102 37 1 7.3387 2.1500 2.4120 38 1 8.2965 3.3585 1.5233 39 1 6.5190 3.4559 1.5227 40 1 8.7624 0.2960 -2.1384 41 1 9.5822 -1.0093 -1.2486 42 1 7.8046 -0.9125 -1.2492 43 1 10.1048 1.9913 0.8913 44 1 10.9251 0.6859 0.0011 45 1 10.1054 1.9912 -0.8887 46 1 7.8034 -0.9132 1.2493 47 1 9.5810 -1.0101 1.2503 48 1 8.7603 0.2947 2.1401 49 1 4.4454 -1.2812 0.0094 50 1 0.5649 -2.2854 1.7274 51 1 -0.1632 -4.6346 1.7270 52 1 0.6742 -6.1870 0.0131 53 1 3.4183 -1.8419 -1.9099 54 1 4.4361 -4.5601 -1.9767 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_13569790_15493832.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:11 Heat of formation + Delta-G solvation = -58.167464 kcal Electronic energy + Delta-G solvation = -34399.109543 eV Core-core repulsion = 29990.006795 eV Total energy + Delta-G solvation = -4409.102748 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 380.184 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -50.22658 -42.41783 -40.17915 -38.01356 -37.73738 -36.78387 -34.43511 -33.61509 -32.02071 -30.12528 -29.42828 -29.01815 -28.89114 -27.78754 -27.33173 -27.12888 -25.93116 -24.40825 -22.82449 -21.50999 -20.79939 -20.32517 -18.77776 -18.48402 -17.83028 -17.61754 -17.28504 -17.01935 -16.77435 -16.62654 -16.04893 -15.83019 -15.64863 -15.57561 -15.44976 -14.92239 -14.81371 -14.80434 -14.66788 -14.60622 -14.31576 -13.93936 -13.71575 -13.59742 -13.44005 -13.39710 -13.32113 -13.21825 -13.13788 -13.01020 -12.90631 -12.87395 -12.79210 -12.47109 -12.35454 -12.24693 -11.97545 -11.81152 -11.65629 -11.61809 -11.55509 -11.37444 -10.76076 -10.52706 -10.29677 -10.01712 -9.80341 -9.75618 -9.34517 -0.27659 -0.04341 0.77887 1.01770 1.26557 1.32238 1.36188 1.65333 1.69049 1.78699 1.82555 2.16529 2.42740 2.49948 2.96234 3.28049 3.36424 3.50759 3.60133 3.82449 3.90913 4.04840 4.17066 4.17430 4.22255 4.25454 4.35898 4.40784 4.44793 4.47451 4.53137 4.57290 4.63603 4.74366 4.78664 4.80031 4.82492 4.83494 4.86344 4.87144 4.88140 4.99737 5.04422 5.05357 5.14363 5.14423 5.18373 5.22847 5.27611 5.37031 5.42877 5.46043 5.52541 5.60306 5.66171 5.68725 5.70966 5.95701 6.50455 6.62077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.366 5.366 3 N -0.305 5.305 4 C 0.058 3.942 5 C 0.163 3.837 6 O -0.632 6.632 7 Si 1.320 2.680 8 C -0.519 4.519 9 C -0.517 4.517 10 C -0.379 4.379 11 C -0.136 4.136 12 C -0.140 4.140 13 C -0.136 4.136 14 C -0.227 4.227 15 C 0.106 3.894 16 C -0.003 4.003 17 C -0.104 4.104 18 C -0.077 4.077 19 C -0.134 4.134 20 C 0.082 3.918 21 F -0.137 7.137 22 C -0.132 4.132 23 C -0.084 4.084 24 O -0.538 6.538 25 Si 0.949 3.051 26 H -0.260 1.260 27 H -0.259 1.259 28 H -0.234 1.234 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.047 0.953 48 H 0.061 0.939 49 H 0.153 0.847 50 H 0.149 0.851 51 H 0.172 0.828 52 H 0.162 0.838 53 H 0.122 0.878 54 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.274 -0.837 2.457 5.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.149 5.149 3 N -0.130 5.130 4 C -0.106 4.106 5 C 0.086 3.914 6 O -0.590 6.590 7 Si 1.451 2.549 8 C -0.621 4.621 9 C -0.619 4.619 10 C -0.422 4.422 11 C -0.193 4.193 12 C -0.198 4.198 13 C -0.193 4.193 14 C -0.256 4.256 15 C -0.021 4.021 16 C -0.005 4.005 17 C -0.123 4.123 18 C -0.095 4.095 19 C -0.153 4.153 20 C 0.063 3.937 21 F -0.115 7.115 22 C -0.134 4.134 23 C -0.194 4.194 24 O -0.345 6.345 25 Si 0.770 3.230 26 H -0.184 1.184 27 H -0.183 1.183 28 H -0.156 1.156 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.171 0.829 50 H 0.167 0.833 51 H 0.190 0.810 52 H 0.180 0.820 53 H 0.140 0.860 54 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -5.414 0.320 1.679 5.677 hybrid contribution 1.103 -0.971 0.072 1.471 sum -4.311 -0.651 1.750 4.698 Atomic orbital electron populations 1.22247 0.72065 1.05785 1.05044 1.49040 1.07396 1.01998 1.56453 1.77200 1.01252 1.08235 1.26337 1.22322 0.93106 0.94839 1.00309 1.20139 0.79465 0.88703 1.03093 1.85262 1.27851 1.54156 1.91742 0.76155 0.55234 0.58736 0.64779 1.27100 1.05136 1.11594 1.18224 1.27083 1.05142 1.11537 1.18163 1.25884 1.11925 1.06676 0.97696 1.21532 1.01617 0.99435 0.96761 1.21603 0.96115 0.99694 1.02343 1.21528 1.01587 0.99436 0.96752 1.21370 0.96057 0.94356 1.13795 1.19562 0.90929 0.87617 1.03953 1.17621 0.98472 0.88781 0.95671 1.21564 0.96014 0.97300 0.97377 1.21360 0.98542 0.91742 0.97810 1.21619 0.96771 1.02889 0.94021 1.17542 0.98987 0.86740 0.90431 1.91478 1.87729 1.69426 1.62884 1.20282 1.01233 0.92855 0.99077 1.25023 0.87292 1.01562 1.05512 1.86547 1.28050 1.24494 1.95405 0.85807 0.79404 0.82158 0.75607 1.18439 1.18330 1.15593 0.88545 0.88300 0.88282 0.89285 0.89196 0.90901 0.90157 0.91250 0.91140 0.90151 0.90905 0.92178 0.93438 0.92682 0.91679 0.93161 0.91779 0.92700 0.93418 0.92025 0.82906 0.83328 0.81036 0.82017 0.86034 0.76919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.35 10.79 127.77 1.38 1.03 16 2 N -0.37 -1.55 4.05 -356.92 -1.45 -3.00 16 3 N -0.31 -2.47 12.56 -47.59 -0.60 -3.07 16 4 C 0.06 0.42 7.16 43.01 0.31 0.73 16 5 C 0.16 0.39 5.75 71.24 0.41 0.80 16 6 O -0.63 -1.79 7.87 -148.98 -1.17 -2.96 16 7 Si 1.32 -1.45 8.45 68.60 0.58 -0.87 16 8 C -0.52 0.43 8.50 113.37 0.96 1.40 16 9 C -0.52 0.63 8.50 113.37 0.96 1.59 16 10 C -0.38 -0.35 0.53 -10.80 -0.01 -0.36 16 11 C -0.14 -0.37 7.85 71.98 0.56 0.20 16 12 C -0.14 0.05 7.85 71.98 0.56 0.62 16 13 C -0.14 -0.28 7.85 71.98 0.56 0.28 16 14 C -0.23 -1.73 7.96 22.20 0.18 -1.56 16 15 C 0.11 0.53 5.59 40.66 0.23 0.76 16 16 C 0.00 -0.01 5.37 -20.09 -0.11 -0.11 16 17 C -0.10 0.37 9.26 22.52 0.21 0.58 16 18 C -0.08 0.49 10.03 22.23 0.22 0.72 16 19 C -0.13 0.51 10.02 22.36 0.22 0.73 16 20 C 0.08 0.08 6.53 22.34 0.15 0.23 16 21 F -0.14 -0.33 12.86 44.97 0.58 0.25 16 22 C -0.13 -0.37 4.63 -19.58 -0.09 -0.46 16 23 C -0.08 -0.38 2.44 71.24 0.17 -0.21 16 24 O -0.54 -2.86 12.88 -148.98 -1.92 -4.78 16 25 Si 0.95 4.00 26.61 68.60 1.83 5.82 16 26 H -0.26 -1.37 7.11 99.48 0.71 -0.66 16 27 H -0.26 -1.72 7.11 99.48 0.71 -1.02 16 28 H -0.23 -0.91 5.79 99.48 0.58 -0.33 16 29 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.10 -0.66 7.97 -2.39 -0.02 -0.68 16 32 H 0.09 -0.07 7.21 -2.39 -0.02 -0.09 16 33 H 0.09 -0.09 7.21 -2.39 -0.02 -0.10 16 34 H 0.07 -0.13 7.48 -2.39 -0.02 -0.15 16 35 H 0.08 -0.15 7.79 -2.39 -0.02 -0.17 16 36 H 0.07 0.02 7.79 -2.39 -0.02 0.01 16 37 H 0.07 -0.02 7.79 -2.38 -0.02 -0.04 16 38 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 39 H 0.07 -0.15 7.48 -2.39 -0.02 -0.17 16 40 H 0.06 0.07 7.80 -2.38 -0.02 0.05 16 41 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.05 0.24 7.97 -2.39 -0.02 0.22 16 43 H 0.06 -0.14 7.79 -2.38 -0.02 -0.16 16 44 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 45 H 0.06 -0.13 7.79 -2.39 -0.02 -0.14 16 46 H 0.05 0.19 7.97 -2.39 -0.02 0.17 16 47 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 48 H 0.06 0.02 7.79 -2.39 -0.02 0.00 16 49 H 0.15 1.37 7.88 -2.91 -0.02 1.35 16 50 H 0.15 -1.04 8.06 -2.91 -0.02 -1.06 16 51 H 0.17 -2.15 8.06 -2.91 -0.02 -2.17 16 52 H 0.16 -1.28 8.06 -2.91 -0.02 -1.30 16 53 H 0.12 0.77 4.95 -2.39 -0.01 0.76 16 54 H 0.38 0.09 7.35 -74.06 -0.54 -0.46 16 Total: 0.00 -14.67 432.55 5.71 -8.97 By element: Atomic # 1 Polarization: -8.29 SS G_CDS: 0.97 Total: -7.32 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 6.89 Total: 6.96 kcal Atomic # 7 Polarization: -4.02 SS G_CDS: -2.04 Total: -6.07 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -3.09 Total: -7.74 kcal Atomic # 9 Polarization: -0.33 SS G_CDS: 0.58 Total: 0.25 kcal Atomic # 14 Polarization: 2.54 SS G_CDS: 2.41 Total: 4.95 kcal Total: -14.67 5.71 -8.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_13569790_15493832.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.201 kcal (2) G-P(sol) polarization free energy of solvation -14.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds