Wall clock time and date at job start Mon Mar 8 2021 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 H 1.48494 * 109.46934 * 60.00049 * 3 2 1 5 5 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 6 6 H 1.48495 * 109.46973 * 300.00306 * 3 2 1 7 7 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 8 8 C 1.34760 * 125.66229 * 65.27867 * 7 2 1 9 9 C 1.40894 * 107.04318 * 179.97438 * 8 7 2 10 10 C 1.36025 * 106.73626 * 0.02562 * 9 8 7 11 11 C 1.47678 * 125.93911 * 179.97438 * 10 9 8 12 12 C 1.39715 * 120.02385 * 0.27914 * 11 10 9 13 13 C 1.37662 * 119.97799 * 179.97438 * 12 11 10 14 14 C 1.39508 * 120.02146 * 0.02562 * 13 12 11 15 15 C 1.48280 * 119.97138 * 179.97438 * 14 13 12 16 16 C 1.39397 * 120.12730 * 0.27346 * 15 14 13 17 17 C 1.38005 * 119.87062 * 180.02562 * 16 15 14 18 18 C 1.38332 * 120.12601 * 0.02562 * 17 16 15 19 Xx 1.81000 * 119.87218 * 179.97438 * 18 17 16 20 19 F 9.81978 * 147.80935 * 85.56708 * 12 1 2 21 20 F 1.61004 * 90.00061 * 134.99872 * 19 18 17 22 21 F 1.61004 * 89.99939 * 314.99872 * 19 18 17 23 22 F 1.60996 * 90.00141 * 224.99875 * 19 18 17 24 23 F 1.60996 * 89.99859 * 44.99875 * 19 18 17 25 24 C 1.38340 * 120.25880 * 359.97438 * 18 17 16 26 25 C 1.38004 * 120.12266 * 359.71720 * 25 18 17 27 26 C 1.39495 * 120.05232 * 359.97374 * 14 13 12 28 27 C 1.37671 * 120.02468 * 359.76927 * 27 14 13 29 28 O 1.34306 * 125.65604 * 244.97597 * 7 2 1 30 29 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 31 30 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 32 31 H 1.08003 * 126.47750 * 359.95971 * 8 7 2 33 32 H 1.07998 * 126.63419 * 179.97438 * 9 8 7 34 33 H 1.07998 * 120.01470 * 359.97438 * 12 11 10 35 34 H 1.07996 * 119.99336 * 179.97438 * 13 12 11 36 35 H 1.07997 * 120.06789 * 359.97438 * 16 15 14 37 36 H 1.08002 * 119.93667 * 179.97438 * 17 16 15 38 37 H 1.07996 * 119.93813 * 180.02562 * 25 18 17 39 38 H 1.08001 * 120.05836 * 180.02562 * 26 25 18 40 39 H 1.08004 * 119.99151 * 180.02562 * 27 14 13 41 40 H 1.08000 * 120.01071 * 179.97438 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 0.0006 6 1 1.5551 2.4565 -1.2124 7 6 1.9313 -0.7105 1.2304 8 6 1.7615 -2.0185 1.5067 9 6 2.3844 -2.2629 2.7466 10 6 2.9054 -1.0775 3.1637 11 6 3.6512 -0.8520 4.4182 12 6 3.8799 -1.9145 5.2961 13 6 4.5757 -1.7033 6.4650 14 6 5.0519 -0.4288 6.7733 15 6 5.8007 -0.2025 8.0330 16 6 6.0351 -1.2622 8.9077 17 6 6.7322 -1.0455 10.0789 18 6 7.1976 0.2205 10.3857 19 9 8.9277 0.7420 13.2893 20 9 9.1990 1.3703 11.1209 21 9 7.0219 -0.3759 12.7270 22 9 7.2457 1.8273 12.1979 23 9 8.9751 -0.8329 11.6500 24 6 6.9680 1.2761 9.5214 25 6 6.2776 1.0699 8.3444 26 6 4.8241 0.6328 5.8975 27 6 4.1331 0.4228 4.7255 28 8 2.6275 -0.1463 2.2308 29 1 -0.3933 0.4417 0.7650 30 1 1.7924 -0.5139 -0.8900 31 1 1.2453 -2.7425 0.8937 32 1 2.4373 -3.2083 3.2660 33 1 3.5111 -2.9012 5.0578 34 1 4.7523 -2.5244 7.1440 35 1 5.6712 -2.2508 8.6698 36 1 6.9140 -1.8657 10.7575 37 1 7.3340 2.2623 9.7659 38 1 6.0993 1.8946 7.6702 39 1 5.1936 1.6190 6.1370 40 1 3.9565 1.2450 4.0478 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14315956_11652086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:47:01 Heat of formation + Delta-G solvation = 419.761138 kcal Electronic energy + Delta-G solvation = -31952.039325 eV Core-core repulsion = 26448.946214 eV Total energy + Delta-G solvation = -5503.093112 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 374.085 amu Computer time = 8.36 seconds Orbital eigenvalues (eV) -45.54603 -42.26952 -41.45121 -40.73113 -40.53243 -40.37920 -40.00205 -39.95318 -38.55575 -36.17769 -35.32788 -33.64665 -32.82797 -32.58350 -30.51150 -27.49042 -25.84012 -25.16046 -24.25550 -23.17941 -22.96280 -22.30506 -20.20058 -19.11265 -18.80393 -18.52803 -17.71963 -17.49119 -16.95505 -16.33121 -16.28200 -16.05674 -15.71760 -15.58144 -15.40378 -15.29018 -15.13826 -14.86620 -14.81641 -14.68950 -14.34123 -13.73397 -13.31135 -13.21901 -12.48981 -12.45577 -12.35988 -12.21638 -12.08730 -11.93583 -11.86832 -11.38901 -11.18770 -11.11476 -11.05851 -10.84087 -10.78775 -10.65549 -10.64222 -10.33886 -10.00688 -9.89180 -9.75056 -9.53298 -9.41110 -9.28153 -8.42081 -5.09747 -2.92572 -1.96212 -1.22556 -0.71275 -0.41486 -0.30172 -0.06205 -0.03854 0.42765 0.65582 1.38591 1.44418 1.48962 1.58664 1.99138 2.06741 2.11133 2.19869 2.42990 2.56421 2.64567 2.72840 2.79998 2.96856 2.99400 3.10382 3.23133 3.27786 3.33500 3.56706 3.96910 4.00255 4.03282 4.10707 4.11269 4.15941 4.32040 4.35625 4.37765 4.48191 4.53155 4.64637 4.67756 4.75868 5.04963 5.33028 6.28522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.513 6.513 2 C -0.062 4.062 3 Si 0.948 3.052 4 H -0.239 1.239 5 H -0.242 1.242 6 H -0.278 1.278 7 C 0.241 3.759 8 C -0.189 4.189 9 C 0.075 3.925 10 C 0.115 3.885 11 C 0.140 3.860 12 C 0.014 3.986 13 C -0.121 4.121 14 C 0.257 3.743 15 C -0.136 4.136 16 C 0.043 3.957 17 C -0.191 4.191 18 C 0.501 3.499 19 F -0.322 7.322 20 F -0.546 7.546 21 F -0.607 7.607 22 F -0.616 7.616 23 F -0.540 7.540 24 C -0.192 4.192 25 C 0.035 3.965 26 C -0.121 4.121 27 C -0.015 4.015 28 O -0.189 6.189 29 H 0.408 0.592 30 H 0.205 0.795 31 H 0.234 0.766 32 H 0.274 0.726 33 H 0.250 0.750 34 H 0.211 0.789 35 H 0.251 0.749 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.240 0.760 39 H 0.196 0.804 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -48.468 -18.085 -81.397 96.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.322 6.322 2 C -0.173 4.173 3 Si 0.771 3.229 4 H -0.161 1.161 5 H -0.165 1.165 6 H -0.203 1.203 7 C 0.188 3.812 8 C -0.207 4.207 9 C 0.057 3.943 10 C 0.070 3.930 11 C 0.139 3.861 12 C -0.003 4.003 13 C -0.138 4.138 14 C 0.257 3.743 15 C -0.136 4.136 16 C 0.027 3.973 17 C -0.209 4.209 18 C 0.491 3.509 19 F -0.322 7.322 20 F -0.543 7.543 21 F -0.604 7.604 22 F -0.613 7.613 23 F -0.538 7.538 24 C -0.210 4.210 25 C 0.019 3.981 26 C -0.138 4.138 27 C -0.032 4.032 28 O -0.088 6.088 29 H 0.261 0.739 30 H 0.222 0.778 31 H 0.251 0.749 32 H 0.290 0.710 33 H 0.266 0.734 34 H 0.228 0.772 35 H 0.267 0.733 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.256 0.744 39 H 0.213 0.787 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -47.981 -17.214 -81.848 96.424 hybrid contribution 1.745 1.225 3.530 4.124 sum -46.236 -15.989 -78.318 92.342 Atomic orbital electron populations 1.86863 1.13303 1.81301 1.50711 1.25241 0.86910 1.11426 0.93714 0.85519 0.81035 0.74010 0.82346 1.16124 1.16476 1.20263 1.26071 0.75189 0.94303 0.85660 1.23490 1.02875 0.95519 0.98827 1.25041 0.77979 1.00187 0.91047 1.21727 0.94242 0.88322 0.88749 1.19698 0.83764 0.95568 0.87034 1.22904 0.88016 1.01573 0.87764 1.22657 0.95103 0.96524 0.99470 1.20519 0.73420 0.95782 0.84552 1.19273 1.04159 0.93069 0.97121 1.22302 0.87300 1.03372 0.84312 1.22018 1.01598 0.95560 1.01733 1.26184 0.74706 0.95065 0.54930 1.99996 1.65738 1.96398 1.70050 1.99875 1.83953 1.97504 1.72991 1.99884 1.72771 1.98044 1.89679 1.99886 1.76395 1.89938 1.95036 1.99875 1.87717 1.85547 1.80615 1.21970 1.03558 1.00697 0.94821 1.22229 0.86665 0.99997 0.89226 1.22541 0.96799 1.02091 0.92386 1.22755 0.87372 0.97612 0.95425 1.84751 1.59023 1.38096 1.26927 0.73933 0.77830 0.74895 0.70992 0.73412 0.77204 0.73326 0.84652 0.85104 0.74383 0.78718 0.77196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 132. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 22.34 12.88 -148.98 -1.92 20.43 16 2 C -0.06 2.99 2.98 71.23 0.21 3.20 16 3 Si 0.95 -36.19 27.39 68.60 1.88 -34.32 16 4 H -0.24 8.90 7.11 99.48 0.71 9.61 16 5 H -0.24 8.77 7.11 99.48 0.71 9.48 16 6 H -0.28 7.55 7.11 99.48 0.71 8.26 16 7 C 0.24 -13.29 6.21 24.89 0.15 -13.14 16 8 C -0.19 11.44 10.78 22.12 0.24 11.68 16 9 C 0.07 -4.94 10.26 22.41 0.23 -4.71 16 10 C 0.12 -7.11 7.03 24.25 0.17 -6.93 16 11 C 0.14 -8.34 5.88 -20.07 -0.12 -8.45 16 12 C 0.01 -0.84 9.54 22.49 0.21 -0.62 16 13 C -0.12 6.02 9.41 22.44 0.21 6.23 16 14 C 0.26 -10.16 5.88 -20.00 -0.12 -10.27 16 15 C -0.14 2.37 5.88 -20.05 -0.12 2.25 16 16 C 0.04 -0.29 9.43 22.49 0.21 -0.07 16 17 C -0.19 -5.21 8.60 22.24 0.19 -5.02 16 18 C 0.50 24.23 4.83 22.32 0.11 24.34 16 19 F -0.32 -33.52 16.66 44.97 0.75 -32.77 16 20 F -0.55 -48.55 15.29 44.97 0.69 -47.86 16 21 F -0.61 -55.01 15.31 44.97 0.69 -54.32 16 22 F -0.62 -56.25 15.31 44.97 0.69 -55.56 16 23 F -0.54 -47.68 15.29 44.97 0.69 -46.99 16 24 C -0.19 -5.49 8.60 22.24 0.19 -5.30 16 25 C 0.04 -0.17 9.43 22.49 0.21 0.04 16 26 C -0.12 5.54 9.41 22.44 0.21 5.75 16 27 C -0.01 0.79 9.70 22.49 0.22 1.01 16 28 O -0.19 10.60 8.80 -6.49 -0.06 10.54 16 29 H 0.41 -20.42 8.70 -74.06 -0.64 -21.06 16 30 H 0.21 -10.68 7.96 -2.39 -0.02 -10.70 16 31 H 0.23 -14.42 8.06 -2.91 -0.02 -14.45 16 32 H 0.27 -20.64 7.25 -2.91 -0.02 -20.67 16 33 H 0.25 -17.91 6.97 -2.91 -0.02 -17.94 16 34 H 0.21 -10.85 6.19 -2.91 -0.02 -10.86 16 35 H 0.25 -6.44 6.19 -2.91 -0.02 -6.46 16 36 H 0.14 5.11 7.38 -2.91 -0.02 5.09 16 37 H 0.13 5.19 7.38 -2.91 -0.02 5.17 16 38 H 0.24 -5.29 6.19 -2.91 -0.02 -5.30 16 39 H 0.20 -8.86 6.19 -2.91 -0.02 -8.88 16 40 H 0.21 -12.19 7.90 -2.91 -0.02 -12.21 16 Total: 0.00 -338.87 368.45 7.08 -331.79 By element: Atomic # 1 Polarization: -92.17 SS G_CDS: 1.25 Total: -90.92 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 2.42 Total: -0.03 kcal Atomic # 8 Polarization: 32.94 SS G_CDS: -1.98 Total: 30.97 kcal Atomic # 9 Polarization: -241.00 SS G_CDS: 3.50 Total: -237.50 kcal Atomic # 14 Polarization: -36.19 SS G_CDS: 1.88 Total: -34.32 kcal Total: -338.87 7.08 -331.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14315956_11652086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 751.551 kcal (2) G-P(sol) polarization free energy of solvation -338.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 412.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -331.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 419.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.36 seconds