Wall clock time and date at job start Mon Mar 8 2021 06:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32560 * 1 3 3 C 1.47834 * 120.00044 * 2 1 4 4 C 1.39579 * 120.08265 * 180.02562 * 3 2 1 5 5 C 1.38082 * 120.09946 * 180.02562 * 4 3 2 6 6 C 1.38099 * 120.27367 * 0.02562 * 5 4 3 7 7 C 1.39452 * 120.16273 * 359.97438 * 6 5 4 8 8 C 1.48399 * 120.04956 * 179.97438 * 7 6 5 9 9 N 1.31645 * 125.96331 * 317.78466 * 8 7 6 10 10 N 1.40081 * 108.14832 * 180.11958 * 9 8 7 11 11 C 1.40115 * 125.99505 * 179.81660 * 10 9 8 12 12 C 1.38852 * 120.07147 * 179.64876 * 11 10 9 13 13 C 1.38110 * 119.93225 * 180.02562 * 12 11 10 14 14 C 1.38290 * 120.06785 * 0.02562 * 13 12 11 15 15 C 1.38275 * 120.13670 * 0.02562 * 14 13 12 16 16 C 1.38115 * 120.07214 * 359.97438 * 15 14 13 17 17 C 1.35862 * 108.01382 * 359.55858 * 10 9 8 18 18 C 1.35074 * 107.86221 * 0.26104 * 17 10 9 19 19 C 1.50693 * 126.05456 * 180.02562 * 18 17 10 20 20 O 1.42895 * 109.47660 * 105.17032 * 19 18 17 21 21 Si 1.86297 * 109.47266 * 345.16440 * 19 18 17 22 22 H 1.48496 * 109.47700 * 180.02562 * 21 19 18 23 23 H 1.48505 * 109.47193 * 300.00636 * 21 19 18 24 24 H 1.48500 * 109.46901 * 60.00217 * 21 19 18 25 25 C 1.39082 * 119.89463 * 0.27022 * 7 6 5 26 26 Si 1.86802 * 119.99980 * 180.02562 * 2 1 3 27 27 C 1.86299 * 109.46907 * 239.99715 * 26 2 1 28 28 C 1.86295 * 109.47247 * 359.97438 * 26 2 1 29 29 C 1.86304 * 109.46916 * 119.99966 * 26 2 1 30 30 H 1.07998 * 119.99762 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99834 * 359.97438 * 1 2 3 32 32 H 1.07998 * 119.94732 * 0.02562 * 4 3 2 33 33 H 1.08003 * 119.86114 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.92014 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.03773 * 0.04444 * 12 11 10 36 36 H 1.08000 * 119.97073 * 180.27127 * 13 12 11 37 37 H 1.08002 * 119.92544 * 179.97438 * 14 13 12 38 38 H 1.07998 * 119.96687 * 179.97438 * 15 14 13 39 39 H 1.07995 * 120.03479 * 179.97438 * 16 15 14 40 40 H 1.08005 * 126.07283 * 180.24471 * 17 10 9 41 41 H 1.09009 * 109.47237 * 225.16700 * 19 18 17 42 42 H 0.96695 * 114.00358 * 180.02562 * 20 19 18 43 43 H 1.08004 * 120.13182 * 179.70638 * 25 7 6 44 44 H 1.08996 * 109.47394 * 59.99913 * 27 26 2 45 45 H 1.09001 * 109.47063 * 180.02562 * 27 26 2 46 46 H 1.08998 * 109.47249 * 299.99976 * 27 26 2 47 47 H 1.09001 * 109.47029 * 59.99971 * 28 26 2 48 48 H 1.09000 * 109.47142 * 180.02562 * 28 26 2 49 49 H 1.09008 * 109.46502 * 300.00224 * 28 26 2 50 50 H 1.08998 * 109.47386 * 59.99936 * 29 26 2 51 51 H 1.09000 * 109.46606 * 179.97438 * 29 26 2 52 52 H 1.09001 * 109.47200 * 299.99931 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2803 0.0000 4 6 3.4606 1.2823 -0.0005 5 6 4.1513 2.4779 0.0000 6 6 3.4669 3.6773 0.0016 7 6 2.0724 3.6884 0.0021 8 6 1.3395 4.9788 0.0044 9 7 1.6442 6.0396 0.7219 10 7 0.7078 7.0420 0.4380 11 6 0.6797 8.3255 0.9992 12 6 -0.3052 9.2286 0.6218 13 6 -0.3299 10.4931 1.1764 14 6 0.6253 10.8606 2.1065 15 6 1.6080 9.9639 2.4836 16 6 1.6381 8.6978 1.9326 17 6 -0.1650 6.5534 -0.4815 18 6 0.2005 5.2847 -0.7664 19 6 -0.4876 4.3602 -1.7373 20 8 0.2952 4.2511 -2.9277 21 14 -2.1687 5.0430 -2.1598 22 1 -2.8472 4.1317 -3.1160 23 1 -2.9822 5.1563 -0.9226 24 1 -2.0170 6.3851 -2.7770 25 6 1.3697 2.4882 0.0068 26 14 2.2596 -1.6178 -0.0007 27 6 3.3307 -1.7170 1.5203 28 6 1.0490 -3.0338 -0.0006 29 6 3.3307 -1.7157 -1.5220 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 4.0010 0.3473 -0.0014 33 1 5.2314 2.4749 -0.0008 34 1 4.0130 4.6092 0.0024 35 1 -1.0515 8.9423 -0.1046 36 1 -1.0983 11.1945 0.8865 37 1 0.6040 11.8502 2.5385 38 1 2.3529 10.2539 3.2099 39 1 2.4061 7.9981 2.2273 40 1 -1.0026 7.0849 -0.9086 41 1 -0.5990 3.3750 -1.2842 42 1 -0.0886 3.6704 -3.5990 43 1 0.2897 2.4923 0.0120 44 1 2.7041 -1.6596 2.4104 45 1 3.8761 -2.6608 1.5197 46 1 4.0390 -0.8886 1.5207 47 1 0.4220 -2.9758 -0.8903 48 1 1.5940 -3.9777 -0.0005 49 1 0.4227 -2.9761 0.8897 50 1 4.0390 -0.8872 -1.5216 51 1 3.8760 -2.6595 -1.5221 52 1 2.7040 -1.6576 -2.4119 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_11652084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:05 Heat of formation + Delta-G solvation = 81.996687 kcal Electronic energy + Delta-G solvation = -31460.707414 eV Core-core repulsion = 27515.763343 eV Total energy + Delta-G solvation = -3944.944071 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 378.163 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.68629 -40.31080 -39.74741 -37.68766 -35.35642 -34.52923 -32.58018 -32.24860 -31.72199 -30.34456 -29.84274 -29.42730 -28.38070 -28.23738 -26.63963 -24.93359 -24.21433 -23.72290 -22.76513 -21.74021 -20.76580 -19.84076 -19.22795 -18.48333 -17.71818 -17.25029 -16.60317 -16.37564 -16.13837 -16.07206 -15.86373 -15.43419 -15.18292 -14.98647 -14.92852 -14.56752 -14.46858 -14.25091 -14.16373 -14.11178 -14.00967 -13.85424 -13.65032 -13.55182 -13.29025 -13.22992 -13.08053 -12.93248 -12.87559 -12.72410 -12.39764 -12.33514 -12.22961 -12.10419 -11.94066 -11.67180 -11.54542 -11.23711 -10.90625 -10.72396 -10.62063 -10.21636 -10.17891 -10.08999 -9.68953 -9.09422 -8.86349 -0.29584 0.07908 0.26513 0.36620 1.07134 1.09876 1.24297 1.34013 1.36562 1.43098 1.70055 1.72521 1.83974 1.85384 2.19169 2.56020 2.73667 3.07693 3.19213 3.47343 3.66161 3.73270 3.83723 3.91673 3.93684 4.04913 4.08617 4.17255 4.20492 4.30481 4.38437 4.44338 4.52415 4.57153 4.65306 4.69019 4.69962 4.75822 4.76659 4.78916 4.79922 4.82052 4.86715 4.91588 4.94676 5.04588 5.17059 5.27865 5.34486 5.37565 5.44314 5.46700 5.52058 5.56227 5.57118 5.65067 5.67450 5.71807 5.90237 6.10529 6.12916 6.54830 6.65885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.366 4.366 3 C -0.033 4.033 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.092 4.092 7 C -0.007 4.007 8 C 0.147 3.853 9 N -0.269 5.269 10 N -0.316 5.316 11 C 0.159 3.841 12 C -0.143 4.143 13 C -0.091 4.091 14 C -0.127 4.127 15 C -0.094 4.094 16 C -0.118 4.118 17 C 0.060 3.940 18 C -0.197 4.197 19 C -0.042 4.042 20 O -0.540 6.540 21 Si 0.930 3.070 22 H -0.247 1.247 23 H -0.247 1.247 24 H -0.246 1.246 25 C -0.093 4.093 26 Si 1.047 2.953 27 C -0.451 4.451 28 C -0.450 4.450 29 C -0.450 4.450 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.179 0.821 41 H 0.074 0.926 42 H 0.378 0.622 43 H 0.127 0.873 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 -0.841 -0.435 2.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.407 4.407 3 C -0.033 4.033 4 C -0.132 4.132 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.009 4.009 8 C -0.019 4.019 9 N -0.088 5.088 10 N -0.091 5.091 11 C 0.067 3.933 12 C -0.163 4.163 13 C -0.110 4.110 14 C -0.146 4.146 15 C -0.112 4.112 16 C -0.138 4.138 17 C -0.082 4.082 18 C -0.208 4.208 19 C -0.154 4.154 20 O -0.345 6.345 21 Si 0.751 3.249 22 H -0.171 1.171 23 H -0.170 1.170 24 H -0.169 1.169 25 C -0.112 4.112 26 Si 1.239 2.761 27 C -0.558 4.558 28 C -0.558 4.558 29 C -0.558 4.558 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.196 0.804 41 H 0.091 0.909 42 H 0.225 0.775 43 H 0.144 0.856 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.089 0.911 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.052 0.581 0.580 2.210 hybrid contribution -0.633 -0.533 -0.826 1.169 sum -2.685 0.048 -0.246 2.697 Atomic orbital electron populations 1.24394 0.95872 1.01979 0.95348 1.28045 1.01112 1.08160 1.03399 1.18778 0.92906 0.92456 0.99192 1.21459 0.93477 0.98431 0.99882 1.21015 1.00157 0.91921 1.00124 1.21207 0.92756 0.98587 0.98598 1.17585 0.92419 0.88556 1.02300 1.20703 0.93925 0.92900 0.94381 1.77727 1.11871 0.95924 1.23301 1.45747 1.21549 1.09923 1.31880 1.17568 0.97876 0.81120 0.96746 1.20833 0.98789 0.93961 1.02742 1.21013 0.98807 0.95063 0.96078 1.21309 0.95099 1.00215 0.97984 1.21135 0.98480 0.92527 0.99084 1.20946 0.98686 0.97596 0.96544 1.22387 0.97223 0.94649 0.93936 1.19376 1.01244 0.95162 1.04986 1.24012 1.03920 1.00642 0.86812 1.86556 1.50302 1.71224 1.26447 0.86033 0.75221 0.81787 0.81818 1.17060 1.16979 1.16940 1.21282 0.99754 0.90628 0.99523 0.78373 0.66440 0.63516 0.67750 1.26214 1.09755 1.04613 1.15252 1.26151 1.11380 1.13741 1.04550 1.26206 1.09736 1.04611 1.15202 0.87478 0.88781 0.85284 0.85405 0.85778 0.85308 0.84749 0.85146 0.84819 0.84345 0.80423 0.90854 0.77548 0.85562 0.91039 0.91039 0.90954 0.91047 0.90843 0.91069 0.90937 0.91055 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.12 13.39 28.82 0.39 0.50 16 2 C -0.37 0.05 4.70 -37.57 -0.18 -0.13 16 3 C -0.03 -0.06 5.83 -105.05 -0.61 -0.67 16 4 C -0.11 -0.14 8.70 -39.14 -0.34 -0.48 16 5 C -0.11 -0.19 10.02 -39.69 -0.40 -0.59 16 6 C -0.09 -0.30 9.77 -39.18 -0.38 -0.68 16 7 C -0.01 -0.03 5.73 -104.95 -0.60 -0.63 16 8 C 0.15 0.70 6.66 -82.76 -0.55 0.15 16 9 N -0.27 -1.51 11.90 33.44 0.40 -1.11 16 10 N -0.32 -1.34 3.81 -10.61 -0.04 -1.38 16 11 C 0.16 0.48 6.69 -83.61 -0.56 -0.08 16 12 C -0.14 -0.13 9.46 -39.40 -0.37 -0.50 16 13 C -0.09 0.03 10.04 -39.61 -0.40 -0.37 16 14 C -0.13 0.04 10.04 -39.55 -0.40 -0.36 16 15 C -0.09 -0.04 10.04 -39.61 -0.40 -0.44 16 16 C -0.12 -0.28 9.66 -39.40 -0.38 -0.66 16 17 C 0.06 0.17 9.34 -16.89 -0.16 0.01 16 18 C -0.20 -0.65 5.39 -104.75 -0.56 -1.21 16 19 C -0.04 -0.03 2.49 36.00 0.09 0.06 16 20 O -0.54 -0.69 12.86 -35.23 -0.45 -1.14 16 21 Si 0.93 -0.50 26.06 -169.99 -4.43 -4.93 16 22 H -0.25 0.17 7.11 56.52 0.40 0.57 16 23 H -0.25 0.01 7.11 56.52 0.40 0.41 16 24 H -0.25 -0.04 7.03 56.52 0.40 0.36 16 25 C -0.09 -0.24 8.23 -38.85 -0.32 -0.56 16 26 Si 1.05 -2.17 10.79 -169.99 -1.83 -4.01 16 27 C -0.45 0.51 8.65 101.05 0.87 1.39 16 28 C -0.45 0.82 7.86 101.05 0.79 1.61 16 29 C -0.45 0.59 8.65 101.05 0.87 1.46 16 30 H 0.11 -0.26 7.05 -52.49 -0.37 -0.63 16 31 H 0.09 -0.11 6.03 -52.48 -0.32 -0.43 16 32 H 0.13 -0.11 3.69 -52.49 -0.19 -0.31 16 33 H 0.13 -0.06 8.06 -52.48 -0.42 -0.48 16 34 H 0.12 0.37 8.06 -52.49 -0.42 -0.05 16 35 H 0.13 -0.14 6.74 -52.49 -0.35 -0.49 16 36 H 0.13 -0.35 8.06 -52.49 -0.42 -0.78 16 37 H 0.13 -0.31 8.06 -52.49 -0.42 -0.73 16 38 H 0.13 -0.21 8.06 -52.49 -0.42 -0.63 16 39 H 0.14 0.38 7.69 -52.49 -0.40 -0.03 16 40 H 0.18 -0.04 5.33 -52.48 -0.28 -0.32 16 41 H 0.07 -0.05 5.55 -51.92 -0.29 -0.34 16 42 H 0.38 -1.21 8.74 45.56 0.40 -0.81 16 43 H 0.13 0.14 4.31 -52.48 -0.23 -0.08 16 44 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 45 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 46 H 0.07 -0.07 6.57 -51.93 -0.34 -0.41 16 47 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 48 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 49 H 0.07 -0.13 7.96 -51.92 -0.41 -0.54 16 50 H 0.07 -0.08 6.57 -51.93 -0.34 -0.42 16 51 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 52 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 LS Contribution 422.31 15.07 6.36 6.36 Total: 0.00 -7.53 422.31 -10.11 -17.64 By element: Atomic # 1 Polarization: -2.74 SS G_CDS: -6.52 Total: -9.26 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -3.59 Total: -2.17 kcal Atomic # 7 Polarization: -2.85 SS G_CDS: 0.36 Total: -2.49 kcal Atomic # 8 Polarization: -0.69 SS G_CDS: -0.45 Total: -1.14 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: -6.26 Total: -8.94 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -7.53 -10.11 -17.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.639 kcal (2) G-P(sol) polarization free energy of solvation -7.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds