Wall clock time and date at job start Mon Mar 8 2021 06:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32560 * 1 3 3 C 1.47834 * 120.00044 * 2 1 4 4 C 1.39579 * 120.08265 * 180.02562 * 3 2 1 5 5 C 1.38082 * 120.09946 * 180.02562 * 4 3 2 6 6 C 1.38099 * 120.27367 * 0.02562 * 5 4 3 7 7 C 1.39452 * 120.16273 * 359.97438 * 6 5 4 8 8 C 1.48399 * 120.04956 * 179.97438 * 7 6 5 9 9 N 1.31645 * 125.96331 * 317.78466 * 8 7 6 10 10 N 1.40081 * 108.14832 * 180.11958 * 9 8 7 11 11 C 1.40115 * 125.99505 * 179.81660 * 10 9 8 12 12 C 1.38852 * 120.07147 * 179.64876 * 11 10 9 13 13 C 1.38110 * 119.93225 * 180.02562 * 12 11 10 14 14 C 1.38290 * 120.06785 * 0.02562 * 13 12 11 15 15 C 1.38275 * 120.13670 * 0.02562 * 14 13 12 16 16 C 1.38115 * 120.07214 * 359.97438 * 15 14 13 17 17 C 1.35862 * 108.01382 * 359.55858 * 10 9 8 18 18 C 1.35074 * 107.86221 * 0.26104 * 17 10 9 19 19 C 1.50693 * 126.05456 * 180.02562 * 18 17 10 20 20 O 1.42895 * 109.47660 * 105.17032 * 19 18 17 21 21 Si 1.86297 * 109.47266 * 345.16440 * 19 18 17 22 22 H 1.48496 * 109.47700 * 180.02562 * 21 19 18 23 23 H 1.48505 * 109.47193 * 300.00636 * 21 19 18 24 24 H 1.48500 * 109.46901 * 60.00217 * 21 19 18 25 25 C 1.39082 * 119.89463 * 0.27022 * 7 6 5 26 26 Si 1.86802 * 119.99980 * 180.02562 * 2 1 3 27 27 C 1.86299 * 109.46907 * 239.99715 * 26 2 1 28 28 C 1.86295 * 109.47247 * 359.97438 * 26 2 1 29 29 C 1.86304 * 109.46916 * 119.99966 * 26 2 1 30 30 H 1.07998 * 119.99762 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99834 * 359.97438 * 1 2 3 32 32 H 1.07998 * 119.94732 * 0.02562 * 4 3 2 33 33 H 1.08003 * 119.86114 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.92014 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.03773 * 0.04444 * 12 11 10 36 36 H 1.08000 * 119.97073 * 180.27127 * 13 12 11 37 37 H 1.08002 * 119.92544 * 179.97438 * 14 13 12 38 38 H 1.07998 * 119.96687 * 179.97438 * 15 14 13 39 39 H 1.07995 * 120.03479 * 179.97438 * 16 15 14 40 40 H 1.08005 * 126.07283 * 180.24471 * 17 10 9 41 41 H 1.09009 * 109.47237 * 225.16700 * 19 18 17 42 42 H 0.96695 * 114.00358 * 180.02562 * 20 19 18 43 43 H 1.08004 * 120.13182 * 179.70638 * 25 7 6 44 44 H 1.08996 * 109.47394 * 59.99913 * 27 26 2 45 45 H 1.09001 * 109.47063 * 180.02562 * 27 26 2 46 46 H 1.08998 * 109.47249 * 299.99976 * 27 26 2 47 47 H 1.09001 * 109.47029 * 59.99971 * 28 26 2 48 48 H 1.09000 * 109.47142 * 180.02562 * 28 26 2 49 49 H 1.09008 * 109.46502 * 300.00224 * 28 26 2 50 50 H 1.08998 * 109.47386 * 59.99936 * 29 26 2 51 51 H 1.09000 * 109.46606 * 179.97438 * 29 26 2 52 52 H 1.09001 * 109.47200 * 299.99931 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2803 0.0000 4 6 3.4606 1.2823 -0.0005 5 6 4.1513 2.4779 0.0000 6 6 3.4669 3.6773 0.0016 7 6 2.0724 3.6884 0.0021 8 6 1.3395 4.9788 0.0044 9 7 1.6442 6.0396 0.7219 10 7 0.7078 7.0420 0.4380 11 6 0.6797 8.3255 0.9992 12 6 -0.3052 9.2286 0.6218 13 6 -0.3299 10.4931 1.1764 14 6 0.6253 10.8606 2.1065 15 6 1.6080 9.9639 2.4836 16 6 1.6381 8.6978 1.9326 17 6 -0.1650 6.5534 -0.4815 18 6 0.2005 5.2847 -0.7664 19 6 -0.4876 4.3602 -1.7373 20 8 0.2952 4.2511 -2.9277 21 14 -2.1687 5.0430 -2.1598 22 1 -2.8472 4.1317 -3.1160 23 1 -2.9822 5.1563 -0.9226 24 1 -2.0170 6.3851 -2.7770 25 6 1.3697 2.4882 0.0068 26 14 2.2596 -1.6178 -0.0007 27 6 3.3307 -1.7170 1.5203 28 6 1.0490 -3.0338 -0.0006 29 6 3.3307 -1.7157 -1.5220 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 4.0010 0.3473 -0.0014 33 1 5.2314 2.4749 -0.0008 34 1 4.0130 4.6092 0.0024 35 1 -1.0515 8.9423 -0.1046 36 1 -1.0983 11.1945 0.8865 37 1 0.6040 11.8502 2.5385 38 1 2.3529 10.2539 3.2099 39 1 2.4061 7.9981 2.2273 40 1 -1.0026 7.0849 -0.9086 41 1 -0.5990 3.3750 -1.2842 42 1 -0.0886 3.6704 -3.5990 43 1 0.2897 2.4923 0.0120 44 1 2.7041 -1.6596 2.4104 45 1 3.8761 -2.6608 1.5197 46 1 4.0390 -0.8886 1.5207 47 1 0.4220 -2.9758 -0.8903 48 1 1.5940 -3.9777 -0.0005 49 1 0.4227 -2.9761 0.8897 50 1 4.0390 -0.8872 -1.5216 51 1 3.8760 -2.6595 -1.5221 52 1 2.7040 -1.6576 -2.4119 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_11652084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:03 Heat of formation + Delta-G solvation = 91.391469 kcal Electronic energy + Delta-G solvation = -31460.300026 eV Core-core repulsion = 27515.763343 eV Total energy + Delta-G solvation = -3944.536683 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 378.163 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.87315 -40.39763 -39.82558 -37.73368 -35.43687 -34.60150 -32.70074 -32.34524 -31.81294 -30.39115 -29.89725 -29.34549 -28.25166 -28.10719 -26.71596 -25.08108 -24.30438 -23.76219 -22.85420 -21.87242 -20.89876 -19.90560 -19.32200 -18.52189 -17.81553 -17.26349 -16.70163 -16.51310 -16.23266 -16.12991 -15.89745 -15.47500 -15.24541 -15.07283 -14.96769 -14.59601 -14.49170 -14.22618 -14.17917 -14.07071 -13.91909 -13.84222 -13.70439 -13.54680 -13.16984 -13.12164 -12.99068 -12.94901 -12.79583 -12.72028 -12.43349 -12.38963 -12.20381 -12.14086 -12.00691 -11.71802 -11.65350 -11.31597 -10.75636 -10.66470 -10.56382 -10.36331 -10.21850 -10.12347 -9.85663 -9.18509 -8.99197 -0.42557 -0.02138 0.22224 0.23655 0.97231 1.04292 1.15155 1.28111 1.43029 1.48018 1.59036 1.85675 1.86991 2.03352 2.27406 2.68503 2.69212 2.95066 3.06488 3.36461 3.64361 3.70131 3.81542 3.84841 3.88253 3.99854 4.03749 4.10828 4.15410 4.29283 4.33921 4.34817 4.42817 4.51546 4.56848 4.73092 4.81853 4.84243 4.85661 4.87219 4.90076 4.90755 4.91688 4.91896 4.94467 5.00120 5.07187 5.21645 5.29878 5.33778 5.40384 5.44331 5.50157 5.57641 5.62937 5.64349 5.69631 5.73811 5.86611 6.00448 6.04880 6.32565 6.84547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.387 4.387 3 C -0.036 4.036 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.023 4.023 8 C 0.131 3.869 9 N -0.304 5.304 10 N -0.322 5.322 11 C 0.129 3.871 12 C -0.147 4.147 13 C -0.090 4.090 14 C -0.126 4.126 15 C -0.098 4.098 16 C -0.138 4.138 17 C 0.055 3.945 18 C -0.211 4.211 19 C -0.051 4.051 20 O -0.561 6.561 21 Si 0.970 3.030 22 H -0.240 1.240 23 H -0.254 1.254 24 H -0.255 1.255 25 C -0.103 4.103 26 Si 1.102 2.898 27 C -0.466 4.466 28 C -0.458 4.458 29 C -0.463 4.463 30 H 0.126 0.874 31 H 0.094 0.906 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.122 0.878 40 H 0.204 0.796 41 H 0.083 0.917 42 H 0.395 0.605 43 H 0.135 0.865 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.075 0.925 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 -1.088 -0.910 4.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.427 4.427 3 C -0.036 4.036 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.133 4.133 7 C -0.025 4.025 8 C -0.034 4.034 9 N -0.123 5.123 10 N -0.097 5.097 11 C 0.038 3.962 12 C -0.167 4.167 13 C -0.108 4.108 14 C -0.144 4.144 15 C -0.117 4.117 16 C -0.158 4.158 17 C -0.087 4.087 18 C -0.221 4.221 19 C -0.161 4.161 20 O -0.369 6.369 21 Si 0.790 3.210 22 H -0.163 1.163 23 H -0.177 1.177 24 H -0.179 1.179 25 C -0.122 4.122 26 Si 1.291 2.709 27 C -0.572 4.572 28 C -0.566 4.566 29 C -0.570 4.570 30 H 0.144 0.856 31 H 0.112 0.888 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.133 0.867 35 H 0.164 0.836 36 H 0.181 0.819 37 H 0.174 0.826 38 H 0.168 0.832 39 H 0.140 0.860 40 H 0.221 0.779 41 H 0.100 0.900 42 H 0.245 0.755 43 H 0.153 0.847 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.094 0.906 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.471 0.331 0.102 3.489 hybrid contribution -0.177 -0.413 -0.645 0.786 sum -3.648 -0.081 -0.544 3.689 Atomic orbital electron populations 1.24658 0.95833 1.02937 0.93838 1.28456 1.01696 1.08157 1.04353 1.19090 0.93362 0.92978 0.98168 1.21747 0.93610 0.99042 0.99363 1.21266 1.01200 0.91531 0.99408 1.21271 0.92903 0.98979 1.00123 1.17778 0.92783 0.88864 1.03091 1.21032 0.94683 0.93059 0.94649 1.77645 1.13272 0.96827 1.24602 1.45930 1.21491 1.10148 1.32167 1.17949 0.99194 0.81256 0.97795 1.21134 0.98480 0.94090 1.03022 1.21412 0.99188 0.94868 0.95348 1.21676 0.94302 1.00983 0.97483 1.21383 0.99258 0.91845 0.99183 1.20992 0.98849 0.98444 0.97561 1.22863 0.97553 0.94764 0.93492 1.19774 1.01040 0.95883 1.05453 1.24267 1.04550 1.00900 0.86361 1.86505 1.51318 1.71999 1.27113 0.85470 0.73304 0.81024 0.81170 1.16334 1.17730 1.17896 1.21437 1.00300 0.90562 0.99930 0.77536 0.65206 0.61970 0.66217 1.26391 1.10128 1.04789 1.15914 1.26222 1.11617 1.13875 1.04885 1.26352 1.10053 1.04779 1.15774 0.85597 0.88832 0.83255 0.83516 0.86742 0.83595 0.81935 0.82605 0.83206 0.86012 0.77899 0.89955 0.75515 0.84730 0.91445 0.90531 0.91248 0.90618 0.90586 0.90848 0.91224 0.90563 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.30 13.39 66.67 0.89 1.19 16 2 C -0.39 0.15 4.70 23.66 0.11 0.26 16 3 C -0.04 -0.15 5.83 -20.14 -0.12 -0.27 16 4 C -0.12 -0.39 8.70 22.56 0.20 -0.19 16 5 C -0.12 -0.57 10.02 22.20 0.22 -0.35 16 6 C -0.11 -1.08 9.77 22.53 0.22 -0.86 16 7 C -0.02 -0.25 5.73 -20.07 -0.12 -0.36 16 8 C 0.13 1.65 6.66 42.53 0.28 1.93 16 9 N -0.30 -4.48 11.90 -48.13 -0.57 -5.05 16 10 N -0.32 -3.54 3.81 -187.49 -0.71 -4.26 16 11 C 0.13 1.02 6.69 38.11 0.25 1.28 16 12 C -0.15 -0.29 9.46 22.39 0.21 -0.08 16 13 C -0.09 0.15 10.04 22.25 0.22 0.38 16 14 C -0.13 0.19 10.04 22.29 0.22 0.42 16 15 C -0.10 -0.16 10.04 22.25 0.22 0.06 16 16 C -0.14 -1.00 9.66 22.39 0.22 -0.79 16 17 C 0.06 0.39 9.34 83.34 0.78 1.17 16 18 C -0.21 -1.79 5.39 -19.95 -0.11 -1.89 16 19 C -0.05 -0.12 2.49 71.23 0.18 0.06 16 20 O -0.56 -1.95 12.86 -148.98 -1.92 -3.87 16 21 Si 0.97 -1.43 26.06 68.60 1.79 0.36 16 22 H -0.24 0.65 7.11 99.48 0.71 1.36 16 23 H -0.25 0.12 7.11 99.48 0.71 0.83 16 24 H -0.26 0.04 7.03 99.48 0.70 0.74 16 25 C -0.10 -0.71 8.23 22.74 0.19 -0.52 16 26 Si 1.10 -5.25 10.79 68.60 0.74 -4.51 16 27 C -0.47 1.17 8.65 113.37 0.98 2.15 16 28 C -0.46 2.21 7.86 113.37 0.89 3.10 16 29 C -0.46 1.43 8.65 113.37 0.98 2.41 16 30 H 0.13 -0.78 7.05 -2.91 -0.02 -0.80 16 31 H 0.09 -0.23 6.03 -2.91 -0.02 -0.24 16 32 H 0.15 -0.25 3.69 -2.91 -0.01 -0.26 16 33 H 0.15 0.01 8.06 -2.91 -0.02 -0.02 16 34 H 0.11 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.15 -0.37 6.74 -2.91 -0.02 -0.39 16 36 H 0.16 -1.25 8.06 -2.91 -0.02 -1.27 16 37 H 0.16 -1.07 8.06 -2.91 -0.02 -1.09 16 38 H 0.15 -0.40 8.06 -2.91 -0.02 -0.42 16 39 H 0.12 1.16 7.69 -2.91 -0.02 1.14 16 40 H 0.20 0.01 5.33 -2.91 -0.02 -0.01 16 41 H 0.08 -0.04 5.55 -2.38 -0.01 -0.05 16 42 H 0.39 -2.39 8.74 -74.06 -0.65 -3.03 16 43 H 0.14 0.51 4.31 -2.91 -0.01 0.50 16 44 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 45 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 46 H 0.07 -0.13 6.57 -2.39 -0.02 -0.15 16 47 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 48 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 49 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 50 H 0.07 -0.17 6.57 -2.39 -0.02 -0.19 16 51 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 52 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 Total: 0.00 -19.92 422.31 7.31 -12.61 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: 1.05 Total: -4.38 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 6.94 Total: 9.10 kcal Atomic # 7 Polarization: -8.02 SS G_CDS: -1.29 Total: -9.31 kcal Atomic # 8 Polarization: -1.95 SS G_CDS: -1.92 Total: -3.87 kcal Atomic # 14 Polarization: -6.68 SS G_CDS: 2.53 Total: -4.15 kcal Total: -19.92 7.31 -12.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.998 kcal (2) G-P(sol) polarization free energy of solvation -19.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds