Wall clock time and date at job start Mon Mar 8 2021 07:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32676 * 1 3 3 C 1.47672 * 120.00316 * 2 1 4 4 C 1.39702 * 119.99807 * 133.45608 * 3 2 1 5 5 C 1.37610 * 120.00725 * 179.97438 * 4 3 2 6 6 C 1.39755 * 119.99126 * 359.97438 * 5 4 3 7 7 C 1.47641 * 120.00091 * 179.97438 * 6 5 4 8 8 C 1.36045 * 125.93825 * 180.02562 * 7 6 5 9 9 C 1.40888 * 106.74099 * 180.02562 * 8 7 6 10 10 C 1.34771 * 107.03768 * 359.97438 * 9 8 7 11 11 C 1.50705 * 125.65408 * 179.97438 * 10 9 8 12 12 O 1.42900 * 109.46997 * 300.00406 * 11 10 9 13 13 Si 1.86295 * 109.46896 * 180.02562 * 11 10 9 14 14 H 1.48498 * 109.47023 * 179.97438 * 13 11 10 15 15 H 1.48496 * 109.47388 * 300.00324 * 13 11 10 16 16 H 1.48504 * 109.47264 * 59.99833 * 13 11 10 17 17 O 1.34303 * 108.68517 * 0.02562 * 10 9 8 18 18 C 1.39748 * 119.98788 * 0.27848 * 6 5 4 19 19 C 1.37605 * 119.99976 * 359.45999 * 18 6 5 20 20 Si 1.86801 * 119.99926 * 179.97438 * 2 1 3 21 21 C 1.86302 * 109.47068 * 273.20065 * 20 2 1 22 22 C 1.86297 * 109.46927 * 33.19979 * 20 2 1 23 23 C 1.86298 * 109.47021 * 153.20027 * 20 2 1 24 24 H 1.07998 * 120.00268 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99718 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.99875 * 359.97438 * 4 3 2 27 27 H 1.07994 * 120.00277 * 180.02562 * 5 4 3 28 28 H 1.08003 * 126.63292 * 359.95727 * 8 7 6 29 29 H 1.07999 * 126.48008 * 179.97438 * 9 8 7 30 30 H 1.08992 * 109.47227 * 60.00125 * 11 10 9 31 31 H 0.96695 * 114.00118 * 180.02562 * 12 11 10 32 32 H 1.08005 * 119.99792 * 179.70243 * 18 6 5 33 33 H 1.07999 * 119.99903 * 180.23196 * 19 18 6 34 34 H 1.08994 * 109.47391 * 59.99589 * 21 20 2 35 35 H 1.08998 * 109.46837 * 180.02562 * 21 20 2 36 36 H 1.09007 * 109.47078 * 299.99704 * 21 20 2 37 37 H 1.09005 * 109.47103 * 60.00281 * 22 20 2 38 38 H 1.09005 * 109.47206 * 180.02562 * 22 20 2 39 39 H 1.08998 * 109.47116 * 299.99602 * 22 20 2 40 40 H 1.09006 * 109.47271 * 65.84097 * 23 20 2 41 41 H 1.09007 * 109.46983 * 185.83522 * 23 20 2 42 42 H 1.09003 * 109.47328 * 305.83334 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.1351 1.4676 0.8783 5 6 3.8237 2.6590 0.8780 6 6 3.4529 3.6800 -0.0013 7 6 4.1912 4.9586 -0.0013 8 6 3.9347 6.0287 -0.8012 9 6 4.8762 7.0215 -0.4652 10 6 5.6524 6.5146 0.5130 11 6 6.7985 7.2277 1.1833 12 8 7.7840 7.5689 0.2063 13 14 7.5580 6.1121 2.4675 14 1 8.6877 6.8144 3.1275 15 1 6.5342 5.7570 3.4827 16 1 8.0581 4.8751 1.8153 17 8 5.2359 5.2683 0.7905 18 6 2.3792 3.4929 -0.8760 19 6 1.6944 2.2993 -0.8792 20 14 2.2607 -1.6178 0.0007 21 6 2.4863 -2.2038 1.7547 22 6 1.2984 -2.8908 -0.9605 23 6 3.9290 -1.3720 -0.7913 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 3.4219 0.6784 1.5575 27 1 4.6510 2.8047 1.5567 28 1 3.1598 6.1026 -1.5499 29 1 4.9600 8.0031 -0.9078 30 1 6.4315 8.1357 1.6616 31 1 8.5525 8.0312 0.5677 32 1 2.0895 4.2836 -1.5523 33 1 0.8670 2.1534 -1.5578 34 1 1.5103 -2.3475 2.2182 35 1 3.0317 -3.1475 1.7551 36 1 3.0494 -1.4589 2.3171 37 1 1.1664 -2.5479 -1.9867 38 1 1.8431 -3.8349 -0.9597 39 1 0.3224 -3.0346 -0.4970 40 1 4.5306 -0.7063 -0.1723 41 1 4.4320 -2.3345 -0.8850 42 1 3.8004 -0.9315 -1.7801 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_11652086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:59 Heat of formation + Delta-G solvation = -19.392259 kcal Electronic energy + Delta-G solvation = -21508.828997 eV Core-core repulsion = 18351.175420 eV Total energy + Delta-G solvation = -3157.653577 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.53293 -40.10138 -37.93531 -35.32558 -33.97843 -32.30084 -31.84757 -29.96440 -29.53755 -28.43921 -28.32833 -26.37537 -23.98323 -23.75846 -22.11336 -21.29180 -20.39917 -18.78396 -18.61762 -17.06823 -16.90201 -16.46086 -16.12406 -15.98504 -15.32987 -14.84847 -14.66023 -14.53507 -14.26406 -14.18056 -14.10832 -13.93278 -13.87208 -13.72207 -13.66453 -13.35967 -13.25110 -13.18586 -13.07208 -12.67705 -12.48623 -12.17097 -12.06147 -11.98917 -11.49827 -11.01116 -10.89683 -10.82304 -10.57646 -10.43966 -9.93256 -9.88549 -8.59492 -0.32080 0.48018 0.79667 1.02335 1.21100 1.33438 1.51116 1.66855 1.77769 1.84216 1.85948 1.93983 2.12112 2.54224 2.98576 3.33235 3.63822 3.81569 3.88295 4.00038 4.02096 4.15819 4.29256 4.41168 4.54596 4.64910 4.67707 4.71328 4.72454 4.74013 4.78402 4.79744 4.82252 4.88374 4.95524 5.00760 5.08872 5.26532 5.42013 5.43657 5.47936 5.50527 5.55613 5.57897 5.63142 5.77100 6.00575 6.18533 6.44188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.375 4.375 3 C -0.022 4.022 4 C -0.117 4.117 5 C -0.096 4.096 6 C -0.027 4.027 7 C 0.040 3.960 8 C -0.193 4.193 9 C -0.165 4.165 10 C -0.013 4.013 11 C -0.041 4.041 12 O -0.542 6.542 13 Si 0.949 3.051 14 H -0.247 1.247 15 H -0.246 1.246 16 H -0.245 1.245 17 O -0.169 6.169 18 C -0.090 4.090 19 C -0.114 4.114 20 Si 1.049 2.951 21 C -0.448 4.448 22 C -0.449 4.449 23 C -0.447 4.447 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.095 0.905 31 H 0.388 0.612 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 -0.190 0.910 1.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.416 4.416 3 C -0.022 4.022 4 C -0.134 4.134 5 C -0.114 4.114 6 C -0.027 4.027 7 C -0.010 4.010 8 C -0.212 4.212 9 C -0.184 4.184 10 C -0.063 4.063 11 C -0.151 4.151 12 O -0.349 6.349 13 Si 0.769 3.231 14 H -0.171 1.171 15 H -0.169 1.169 16 H -0.168 1.168 17 O -0.067 6.067 18 C -0.108 4.108 19 C -0.132 4.132 20 Si 1.241 2.759 21 C -0.556 4.556 22 C -0.556 4.556 23 C -0.555 4.555 24 H 0.123 0.877 25 H 0.113 0.887 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.171 0.829 29 H 0.172 0.828 30 H 0.113 0.887 31 H 0.237 0.763 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.587 -1.147 1.361 1.874 hybrid contribution 0.011 0.956 -0.197 0.976 sum -0.576 -0.191 1.164 1.313 Atomic orbital electron populations 1.24335 0.95452 1.01984 0.94446 1.28021 1.01049 1.08171 1.04368 1.19093 0.94833 0.93342 0.94954 1.21139 0.95518 0.97500 0.99282 1.21179 0.99554 0.92777 0.97937 1.17752 0.96088 0.89851 0.99034 1.20438 0.90723 0.95648 0.94188 1.21838 1.03025 0.93133 1.03241 1.21483 0.96605 1.01575 0.98755 1.21313 0.99503 0.83701 1.01777 1.23742 0.89775 1.03576 0.97997 1.86470 1.32570 1.80617 1.35248 0.85632 0.80650 0.79823 0.77005 1.17067 1.16880 1.16775 1.83892 1.40662 1.29628 1.52528 1.20970 0.94189 0.97821 0.97856 1.21197 1.00026 0.92391 0.99613 0.78360 0.66426 0.63445 0.67708 1.26139 1.04829 1.06082 1.18518 1.26137 1.08720 1.11871 1.08920 1.26126 1.17064 1.04692 1.07639 0.87652 0.88686 0.85271 0.85414 0.82887 0.82844 0.88715 0.76336 0.85318 0.85346 0.91106 0.90951 0.91182 0.91012 0.90874 0.91182 0.91051 0.91152 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.13 13.30 28.84 0.38 0.51 16 2 C -0.37 0.18 4.41 -37.62 -0.17 0.01 16 3 C -0.02 -0.02 5.26 -104.95 -0.55 -0.58 16 4 C -0.12 -0.14 8.62 -39.26 -0.34 -0.48 16 5 C -0.10 -0.22 9.70 -39.24 -0.38 -0.61 16 6 C -0.03 -0.08 5.88 -104.93 -0.62 -0.70 16 7 C 0.04 0.15 7.02 -36.53 -0.26 -0.11 16 8 C -0.19 -0.53 10.26 -39.37 -0.40 -0.93 16 9 C -0.17 -0.47 10.77 -39.81 -0.43 -0.90 16 10 C -0.01 -0.04 6.25 -35.53 -0.22 -0.27 16 11 C -0.04 -0.01 2.98 36.01 0.11 0.10 16 12 O -0.54 -0.15 12.84 -35.23 -0.45 -0.61 16 13 Si 0.95 0.23 27.38 -169.99 -4.65 -4.43 16 14 H -0.25 0.16 7.11 56.52 0.40 0.57 16 15 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 16 H -0.24 -0.60 7.11 56.52 0.40 -0.19 16 17 O -0.17 -0.74 8.78 4.61 0.04 -0.70 16 18 C -0.09 -0.14 9.54 -39.25 -0.37 -0.51 16 19 C -0.11 -0.12 9.31 -39.26 -0.37 -0.48 16 20 Si 1.05 -2.16 11.14 -169.99 -1.89 -4.05 16 21 C -0.45 0.65 8.65 101.05 0.87 1.53 16 22 C -0.45 0.73 8.56 101.05 0.87 1.59 16 23 C -0.45 0.29 8.62 101.05 0.87 1.16 16 24 H 0.11 -0.27 7.37 -52.49 -0.39 -0.66 16 25 H 0.09 -0.09 7.84 -52.48 -0.41 -0.50 16 26 H 0.13 -0.10 6.94 -52.49 -0.36 -0.46 16 27 H 0.13 0.20 7.90 -52.49 -0.41 -0.21 16 28 H 0.15 0.07 7.25 -52.48 -0.38 -0.31 16 29 H 0.15 0.18 8.06 -52.49 -0.42 -0.24 16 30 H 0.10 -0.22 7.96 -51.93 -0.41 -0.63 16 31 H 0.39 -1.82 8.74 45.56 0.40 -1.43 16 32 H 0.13 -0.04 6.97 -52.48 -0.37 -0.41 16 33 H 0.13 -0.07 7.93 -52.49 -0.42 -0.49 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 -0.10 7.58 -51.92 -0.39 -0.49 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 38 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 39 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 40 H 0.07 -0.02 7.47 -51.93 -0.39 -0.41 16 41 H 0.07 -0.07 7.96 -51.92 -0.41 -0.49 16 42 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 LS Contribution 358.08 15.07 5.40 5.40 Total: 0.00 -6.18 358.08 -8.20 -14.38 By element: Atomic # 1 Polarization: -3.70 SS G_CDS: -5.63 Total: -9.34 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.00 Total: -0.65 kcal Atomic # 8 Polarization: -0.89 SS G_CDS: -0.41 Total: -1.30 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: -6.55 Total: -8.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -6.18 -8.20 -14.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.013 kcal (2) G-P(sol) polarization free energy of solvation -6.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds