Wall clock time and date at job start Mon Mar 8 2021 07:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32676 * 1 3 3 C 1.47672 * 120.00316 * 2 1 4 4 C 1.39702 * 119.99807 * 133.45608 * 3 2 1 5 5 C 1.37610 * 120.00725 * 179.97438 * 4 3 2 6 6 C 1.39755 * 119.99126 * 359.97438 * 5 4 3 7 7 C 1.47641 * 120.00091 * 179.97438 * 6 5 4 8 8 C 1.36045 * 125.93825 * 180.02562 * 7 6 5 9 9 C 1.40888 * 106.74099 * 180.02562 * 8 7 6 10 10 C 1.34771 * 107.03768 * 359.97438 * 9 8 7 11 11 C 1.50705 * 125.65408 * 179.97438 * 10 9 8 12 12 O 1.42900 * 109.46997 * 300.00406 * 11 10 9 13 13 Si 1.86295 * 109.46896 * 180.02562 * 11 10 9 14 14 H 1.48498 * 109.47023 * 179.97438 * 13 11 10 15 15 H 1.48496 * 109.47388 * 300.00324 * 13 11 10 16 16 H 1.48504 * 109.47264 * 59.99833 * 13 11 10 17 17 O 1.34303 * 108.68517 * 0.02562 * 10 9 8 18 18 C 1.39748 * 119.98788 * 0.27848 * 6 5 4 19 19 C 1.37605 * 119.99976 * 359.45999 * 18 6 5 20 20 Si 1.86801 * 119.99926 * 179.97438 * 2 1 3 21 21 C 1.86302 * 109.47068 * 273.20065 * 20 2 1 22 22 C 1.86297 * 109.46927 * 33.19979 * 20 2 1 23 23 C 1.86298 * 109.47021 * 153.20027 * 20 2 1 24 24 H 1.07998 * 120.00268 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99718 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.99875 * 359.97438 * 4 3 2 27 27 H 1.07994 * 120.00277 * 180.02562 * 5 4 3 28 28 H 1.08003 * 126.63292 * 359.95727 * 8 7 6 29 29 H 1.07999 * 126.48008 * 179.97438 * 9 8 7 30 30 H 1.08992 * 109.47227 * 60.00125 * 11 10 9 31 31 H 0.96695 * 114.00118 * 180.02562 * 12 11 10 32 32 H 1.08005 * 119.99792 * 179.70243 * 18 6 5 33 33 H 1.07999 * 119.99903 * 180.23196 * 19 18 6 34 34 H 1.08994 * 109.47391 * 59.99589 * 21 20 2 35 35 H 1.08998 * 109.46837 * 180.02562 * 21 20 2 36 36 H 1.09007 * 109.47078 * 299.99704 * 21 20 2 37 37 H 1.09005 * 109.47103 * 60.00281 * 22 20 2 38 38 H 1.09005 * 109.47206 * 180.02562 * 22 20 2 39 39 H 1.08998 * 109.47116 * 299.99602 * 22 20 2 40 40 H 1.09006 * 109.47271 * 65.84097 * 23 20 2 41 41 H 1.09007 * 109.46983 * 185.83522 * 23 20 2 42 42 H 1.09003 * 109.47328 * 305.83334 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.1351 1.4676 0.8783 5 6 3.8237 2.6590 0.8780 6 6 3.4529 3.6800 -0.0013 7 6 4.1912 4.9586 -0.0013 8 6 3.9347 6.0287 -0.8012 9 6 4.8762 7.0215 -0.4652 10 6 5.6524 6.5146 0.5130 11 6 6.7985 7.2277 1.1833 12 8 7.7840 7.5689 0.2063 13 14 7.5580 6.1121 2.4675 14 1 8.6877 6.8144 3.1275 15 1 6.5342 5.7570 3.4827 16 1 8.0581 4.8751 1.8153 17 8 5.2359 5.2683 0.7905 18 6 2.3792 3.4929 -0.8760 19 6 1.6944 2.2993 -0.8792 20 14 2.2607 -1.6178 0.0007 21 6 2.4863 -2.2038 1.7547 22 6 1.2984 -2.8908 -0.9605 23 6 3.9290 -1.3720 -0.7913 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 3.4219 0.6784 1.5575 27 1 4.6510 2.8047 1.5567 28 1 3.1598 6.1026 -1.5499 29 1 4.9600 8.0031 -0.9078 30 1 6.4315 8.1357 1.6616 31 1 8.5525 8.0312 0.5677 32 1 2.0895 4.2836 -1.5523 33 1 0.8670 2.1534 -1.5578 34 1 1.5103 -2.3475 2.2182 35 1 3.0317 -3.1475 1.7551 36 1 3.0494 -1.4589 2.3171 37 1 1.1664 -2.5479 -1.9867 38 1 1.8431 -3.8349 -0.9597 39 1 0.3224 -3.0346 -0.4970 40 1 4.5306 -0.7063 -0.1723 41 1 4.4320 -2.3345 -0.8850 42 1 3.8004 -0.9315 -1.7801 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_11652086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:59 Heat of formation + Delta-G solvation = -10.300824 kcal Electronic energy + Delta-G solvation = -21508.434763 eV Core-core repulsion = 18351.175420 eV Total energy + Delta-G solvation = -3157.259343 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.71623 -40.17129 -37.91783 -35.35089 -34.14333 -32.36906 -31.92036 -29.99654 -29.42558 -28.30255 -28.23820 -26.43328 -24.09061 -23.82157 -22.25800 -21.43130 -20.40676 -18.84746 -18.66222 -17.21776 -16.92086 -16.54473 -16.18452 -16.03839 -15.35342 -14.85274 -14.68642 -14.59633 -14.33812 -14.13220 -14.07194 -13.95812 -13.85548 -13.75135 -13.65092 -13.25496 -13.19081 -13.08855 -12.97124 -12.73893 -12.51378 -12.24854 -12.12006 -12.05328 -11.48652 -11.04195 -10.87372 -10.79000 -10.56122 -10.40258 -10.02665 -9.92411 -8.71467 -0.43323 0.38507 0.71852 1.00655 1.19716 1.29031 1.44075 1.62587 1.70641 1.86478 1.89468 1.99502 2.23621 2.64040 2.90205 3.29963 3.66200 3.73587 3.88183 3.92144 3.96007 4.05674 4.33099 4.36770 4.46401 4.65907 4.75187 4.79578 4.80043 4.81196 4.82789 4.85400 4.86930 4.88180 4.89919 4.96934 5.02048 5.22911 5.32602 5.43076 5.47533 5.53142 5.56743 5.64288 5.67528 5.78931 5.96961 6.00870 6.73769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.392 4.392 3 C -0.026 4.026 4 C -0.124 4.124 5 C -0.112 4.112 6 C -0.047 4.047 7 C 0.019 3.981 8 C -0.197 4.197 9 C -0.176 4.176 10 C -0.032 4.032 11 C -0.037 4.037 12 O -0.559 6.559 13 Si 0.978 3.022 14 H -0.225 1.225 15 H -0.267 1.267 16 H -0.285 1.285 17 O -0.187 6.187 18 C -0.093 4.093 19 C -0.122 4.122 20 Si 1.106 2.894 21 C -0.460 4.460 22 C -0.457 4.457 23 C -0.465 4.465 24 H 0.124 0.876 25 H 0.092 0.908 26 H 0.144 0.856 27 H 0.124 0.876 28 H 0.173 0.827 29 H 0.169 0.831 30 H 0.126 0.874 31 H 0.409 0.591 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 -0.043 0.797 1.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.432 4.432 3 C -0.026 4.026 4 C -0.141 4.141 5 C -0.130 4.130 6 C -0.047 4.047 7 C -0.031 4.031 8 C -0.216 4.216 9 C -0.195 4.195 10 C -0.081 4.081 11 C -0.147 4.147 12 O -0.370 6.370 13 Si 0.801 3.199 14 H -0.147 1.147 15 H -0.191 1.191 16 H -0.210 1.210 17 O -0.085 6.085 18 C -0.111 4.111 19 C -0.140 4.140 20 Si 1.294 2.706 21 C -0.567 4.567 22 C -0.565 4.565 23 C -0.571 4.571 24 H 0.142 0.858 25 H 0.111 0.889 26 H 0.162 0.838 27 H 0.142 0.858 28 H 0.190 0.810 29 H 0.187 0.813 30 H 0.143 0.857 31 H 0.261 0.739 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.190 -0.960 1.258 1.980 hybrid contribution 0.212 0.875 -0.171 0.916 sum -0.978 -0.085 1.087 1.465 Atomic orbital electron populations 1.24546 0.95301 1.02841 0.93203 1.28299 1.01494 1.08074 1.05310 1.19360 0.94661 0.94055 0.94495 1.21348 0.95599 0.97465 0.99712 1.21293 0.99963 0.93441 0.98284 1.17944 0.96921 0.89899 0.99975 1.20778 0.91072 0.96452 0.94755 1.22146 1.03375 0.92749 1.03297 1.21772 0.96595 1.02278 0.98869 1.21992 1.00441 0.83453 1.02199 1.23809 0.89118 1.04392 0.97347 1.86419 1.33574 1.81088 1.35872 0.85267 0.80348 0.78186 0.76112 1.14706 1.19133 1.21000 1.83890 1.41116 1.30448 1.53084 1.21185 0.93696 0.98529 0.97705 1.21464 1.00405 0.92234 0.99890 0.77477 0.64449 0.62098 0.66559 1.26267 1.05024 1.06247 1.19137 1.26218 1.09236 1.12032 1.08972 1.26362 1.18735 1.04610 1.07395 0.85794 0.88921 0.83814 0.85771 0.80998 0.81333 0.85689 0.73880 0.83790 0.83765 0.90819 0.90721 0.91364 0.91130 0.90715 0.90460 0.91741 0.90865 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.36 13.30 66.65 0.89 1.24 16 2 C -0.39 0.49 4.41 23.60 0.10 0.59 16 3 C -0.03 -0.07 5.26 -20.08 -0.11 -0.17 16 4 C -0.12 -0.46 8.62 22.48 0.19 -0.27 16 5 C -0.11 -0.77 9.70 22.49 0.22 -0.55 16 6 C -0.05 -0.36 5.88 -20.06 -0.12 -0.48 16 7 C 0.02 0.18 7.02 24.24 0.17 0.35 16 8 C -0.20 -1.26 10.26 22.41 0.23 -1.03 16 9 C -0.18 -1.10 10.77 22.12 0.24 -0.86 16 10 C -0.03 -0.23 6.25 24.89 0.16 -0.08 16 11 C -0.04 -0.02 2.98 71.24 0.21 0.20 16 12 O -0.56 -0.08 12.84 -148.98 -1.91 -1.99 16 13 Si 0.98 1.27 27.38 68.60 1.88 3.15 16 14 H -0.22 0.55 7.11 99.48 0.71 1.26 16 15 H -0.27 -1.19 7.11 99.48 0.71 -0.49 16 16 H -0.28 -2.17 7.11 99.48 0.71 -1.47 16 17 O -0.19 -2.04 8.78 -6.42 -0.06 -2.09 16 18 C -0.09 -0.36 9.54 22.49 0.21 -0.15 16 19 C -0.12 -0.30 9.31 22.48 0.21 -0.09 16 20 Si 1.11 -4.87 11.14 68.60 0.76 -4.11 16 21 C -0.46 1.49 8.65 113.37 0.98 2.47 16 22 C -0.46 1.90 8.56 113.37 0.97 2.88 16 23 C -0.46 0.27 8.62 113.37 0.98 1.25 16 24 H 0.12 -0.85 7.37 -2.91 -0.02 -0.87 16 25 H 0.09 -0.23 7.84 -2.91 -0.02 -0.26 16 26 H 0.14 -0.06 6.94 -2.91 -0.02 -0.08 16 27 H 0.12 0.78 7.90 -2.91 -0.02 0.76 16 28 H 0.17 0.18 7.25 -2.91 -0.02 0.16 16 29 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 30 H 0.13 -0.73 7.96 -2.39 -0.02 -0.75 16 31 H 0.41 -4.26 8.74 -74.06 -0.65 -4.91 16 32 H 0.14 -0.05 6.97 -2.91 -0.02 -0.07 16 33 H 0.14 -0.20 7.93 -2.91 -0.02 -0.23 16 34 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 35 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H 0.07 -0.19 7.58 -2.38 -0.02 -0.21 16 37 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 38 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 39 H 0.08 -0.42 7.69 -2.39 -0.02 -0.43 16 40 H 0.06 0.05 7.47 -2.38 -0.02 0.03 16 41 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 42 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 Total: 0.00 -15.54 358.08 7.32 -8.22 By element: Atomic # 1 Polarization: -9.58 SS G_CDS: 1.11 Total: -8.46 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 5.54 Total: 5.29 kcal Atomic # 8 Polarization: -2.12 SS G_CDS: -1.97 Total: -4.09 kcal Atomic # 14 Polarization: -3.60 SS G_CDS: 2.64 Total: -0.95 kcal Total: -15.54 7.32 -8.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.085 kcal (2) G-P(sol) polarization free energy of solvation -15.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds