Wall clock time and date at job start Mon Mar 8 2021 07:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32673 * 1 3 3 C 1.47675 * 120.00088 * 2 1 4 4 C 1.39706 * 119.99322 * 133.46393 * 3 2 1 5 5 C 1.37610 * 119.99945 * 179.97438 * 4 3 2 6 6 C 1.39729 * 119.99612 * 359.97438 * 5 4 3 7 7 C 1.47696 * 120.00154 * 180.02562 * 6 5 4 8 8 C 1.34890 * 125.27142 * 179.97438 * 7 6 5 9 9 C 1.37918 * 114.69338 * 180.02562 * 8 7 6 10 10 C 1.33652 * 115.07023 * 0.02562 * 9 8 7 11 11 C 1.50702 * 125.11463 * 179.73633 * 10 9 8 12 12 O 1.42894 * 109.47483 * 64.99528 * 11 10 9 13 13 Si 1.86293 * 109.47166 * 184.99862 * 11 10 9 14 14 H 1.48500 * 109.47279 * 59.99538 * 13 11 10 15 15 H 1.48500 * 109.47377 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47052 * 299.99519 * 13 11 10 17 17 S 1.75852 * 109.76916 * 359.97438 * 10 9 8 18 18 C 1.39729 * 119.99705 * 0.27835 * 6 5 4 19 19 C 1.37612 * 119.99360 * 359.44166 * 18 6 5 20 20 Si 1.86798 * 120.00007 * 180.02562 * 2 1 3 21 21 C 1.86300 * 109.47113 * 273.19844 * 20 2 1 22 22 C 1.86305 * 109.47219 * 33.19643 * 20 2 1 23 23 C 1.86305 * 109.47279 * 153.19851 * 20 2 1 24 24 H 1.07998 * 119.99989 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00116 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00333 * 359.95026 * 4 3 2 27 27 H 1.08000 * 120.00394 * 180.02562 * 5 4 3 28 28 H 1.08002 * 122.65123 * 0.04870 * 8 7 6 29 29 H 1.07999 * 122.46779 * 180.02562 * 9 8 7 30 30 H 1.09002 * 109.46743 * 304.99648 * 11 10 9 31 31 H 0.96707 * 114.00106 * 60.00193 * 12 11 10 32 32 H 1.08003 * 120.00254 * 179.73052 * 18 6 5 33 33 H 1.07998 * 119.99899 * 180.30562 * 19 18 6 34 34 H 1.08999 * 109.47283 * 59.99817 * 21 20 2 35 35 H 1.09011 * 109.47204 * 180.02562 * 21 20 2 36 36 H 1.08998 * 109.47333 * 299.99602 * 21 20 2 37 37 H 1.09001 * 109.46446 * 60.00228 * 22 20 2 38 38 H 1.09000 * 109.47268 * 179.97438 * 22 20 2 39 39 H 1.08999 * 109.47008 * 300.00079 * 22 20 2 40 40 H 1.08994 * 109.47197 * 65.83743 * 23 20 2 41 41 H 1.09008 * 109.46934 * 185.83814 * 23 20 2 42 42 H 1.08999 * 109.47025 * 305.83223 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3267 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.1352 1.4675 0.8782 5 6 3.8236 2.6590 0.8780 6 6 3.4528 3.6799 -0.0011 7 6 4.1920 4.9586 -0.0018 8 6 3.9265 6.0113 -0.8022 9 6 4.7561 7.0978 -0.6194 10 6 5.6942 6.9424 0.3197 11 6 6.7201 7.9787 0.7001 12 8 6.0633 9.1121 1.2710 13 14 7.9026 7.2544 1.9442 14 1 8.5852 6.0766 1.3510 15 1 8.9139 8.2754 2.3186 16 1 7.1517 6.8339 3.1543 17 16 5.5557 5.3441 1.0399 18 6 2.3792 3.4930 -0.8757 19 6 1.6946 2.2993 -0.8792 20 14 2.2607 -1.6177 -0.0007 21 6 2.4864 -2.2053 1.7527 22 6 1.2983 -2.8900 -0.9630 23 6 3.9290 -1.3713 -0.7926 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 3.4218 0.6785 1.5576 27 1 4.6511 2.8048 1.5565 28 1 3.1271 6.0041 -1.5285 29 1 4.6551 8.0074 -1.1929 30 1 7.2713 8.2874 -0.1882 31 1 5.5522 8.9110 2.0669 32 1 2.0898 4.2837 -1.5521 33 1 0.8679 2.1530 -1.5586 34 1 1.5103 -2.3495 2.2161 35 1 3.0318 -3.1491 1.7524 36 1 3.0495 -1.4610 2.3158 37 1 1.1664 -2.5462 -1.9889 38 1 1.8436 -3.8339 -0.9638 39 1 0.3223 -3.0342 -0.4996 40 1 4.5306 -0.7062 -0.1731 41 1 4.4320 -2.3338 -0.8871 42 1 3.8004 -0.9300 -1.7809 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_11652144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:04:38 Heat of formation + Delta-G solvation = -8.983169 kcal Electronic energy + Delta-G solvation = -20965.612381 eV Core-core repulsion = 17932.480855 eV Total energy + Delta-G solvation = -3033.131526 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.39893 -39.12539 -37.45396 -35.14695 -32.32550 -31.88424 -29.89184 -29.55438 -28.45224 -28.35232 -26.64149 -24.42428 -23.66707 -23.12450 -20.52237 -20.21894 -18.80319 -17.66091 -17.11670 -16.51835 -16.24753 -16.13426 -15.78844 -15.42549 -14.99546 -14.58700 -14.46412 -14.26812 -14.19281 -14.01281 -13.93009 -13.76147 -13.55977 -13.41507 -13.35154 -13.24003 -13.16794 -13.06694 -12.61632 -12.45752 -12.35635 -12.19846 -11.99344 -11.50320 -11.40119 -10.98540 -10.90828 -10.59785 -10.49952 -10.01106 -9.93938 -9.48503 -8.68945 -0.61453 0.43038 0.45934 0.48058 0.78110 1.10901 1.16171 1.36496 1.49438 1.67258 1.82829 1.85554 1.86625 2.10784 2.52881 2.97711 3.37882 3.59930 3.75641 3.87172 3.97282 3.98664 4.36391 4.42342 4.47133 4.54417 4.62859 4.66189 4.68104 4.71218 4.71785 4.73871 4.77216 4.77858 4.85700 5.03169 5.07918 5.14752 5.31468 5.40894 5.41909 5.47702 5.48965 5.54829 5.57688 5.61434 5.77124 6.01527 6.45026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.374 4.374 3 C -0.025 4.025 4 C -0.113 4.113 5 C -0.105 4.105 6 C -0.029 4.029 7 C -0.125 4.125 8 C -0.134 4.134 9 C -0.095 4.095 10 C -0.225 4.225 11 C -0.037 4.037 12 O -0.533 6.533 13 Si 0.894 3.106 14 H -0.234 1.234 15 H -0.228 1.228 16 H -0.234 1.234 17 S 0.103 5.897 18 C -0.094 4.094 19 C -0.113 4.113 20 Si 1.049 2.951 21 C -0.448 4.448 22 C -0.449 4.449 23 C -0.447 4.447 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.128 0.872 27 H 0.122 0.878 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.378 0.622 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 -2.074 0.003 2.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.415 4.415 3 C -0.025 4.025 4 C -0.131 4.131 5 C -0.124 4.124 6 C -0.031 4.031 7 C -0.242 4.242 8 C -0.164 4.164 9 C -0.126 4.126 10 C -0.343 4.343 11 C -0.151 4.151 12 O -0.339 6.339 13 Si 0.714 3.286 14 H -0.157 1.157 15 H -0.150 1.150 16 H -0.157 1.157 17 S 0.370 5.630 18 C -0.114 4.114 19 C -0.131 4.131 20 Si 1.240 2.760 21 C -0.556 4.556 22 C -0.557 4.557 23 C -0.555 4.555 24 H 0.123 0.877 25 H 0.113 0.887 26 H 0.146 0.854 27 H 0.140 0.860 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.144 0.856 31 H 0.225 0.775 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.771 -2.801 1.270 3.171 hybrid contribution -1.490 0.812 -1.060 2.001 sum -0.719 -1.989 0.210 2.126 Atomic orbital electron populations 1.24330 0.95473 1.01954 0.94546 1.28016 1.01032 1.08190 1.04306 1.19058 0.94966 0.93368 0.95153 1.21100 0.95449 0.97394 0.99152 1.21106 0.99779 0.93183 0.98338 1.18058 0.96021 0.91042 0.97947 1.23036 1.00939 0.97913 1.02329 1.20370 1.02116 0.92403 1.01501 1.19992 0.94712 0.99761 0.98114 1.24949 1.05410 0.99169 1.04743 1.24322 0.97502 0.87910 1.05317 1.86534 1.69227 1.31571 1.46544 0.86280 0.80950 0.81710 0.79695 1.15719 1.15021 1.15723 1.84205 1.29666 1.09878 1.39292 1.21101 0.94656 0.97590 0.98092 1.21235 0.99914 0.92565 0.99430 0.78367 0.66442 0.63468 0.67710 1.26140 1.04830 1.06082 1.18504 1.26137 1.08725 1.11868 1.08925 1.26117 1.17049 1.04678 1.07612 0.87676 0.88724 0.85368 0.85994 0.83882 0.83651 0.85629 0.77484 0.85575 0.85594 0.91105 0.90948 0.91198 0.91028 0.90874 0.91178 0.91071 0.91151 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.13 13.31 28.84 0.38 0.51 16 2 C -0.37 0.22 4.41 -37.62 -0.17 0.05 16 3 C -0.03 -0.02 5.26 -104.95 -0.55 -0.57 16 4 C -0.11 -0.10 8.62 -39.26 -0.34 -0.44 16 5 C -0.11 -0.17 9.58 -39.25 -0.38 -0.54 16 6 C -0.03 -0.06 5.88 -104.92 -0.62 -0.68 16 7 C -0.13 -0.25 6.37 -36.91 -0.24 -0.49 16 8 C -0.13 -0.16 9.65 -40.89 -0.39 -0.56 16 9 C -0.10 -0.10 10.03 -41.31 -0.41 -0.51 16 10 C -0.23 -0.23 5.70 -35.91 -0.20 -0.44 16 11 C -0.04 0.00 2.96 36.01 0.11 0.11 16 12 O -0.53 -0.24 12.88 -35.23 -0.45 -0.70 16 13 Si 0.89 -0.05 26.25 -169.99 -4.46 -4.51 16 14 H -0.23 -0.15 7.11 56.52 0.40 0.25 16 15 H -0.23 -0.16 7.11 56.52 0.40 0.24 16 16 H -0.23 -0.05 7.11 56.52 0.40 0.35 16 17 S 0.10 0.16 19.48 -107.50 -2.09 -1.93 16 18 C -0.09 -0.11 9.52 -39.25 -0.37 -0.49 16 19 C -0.11 -0.11 9.31 -39.26 -0.37 -0.47 16 20 Si 1.05 -2.32 11.15 -169.99 -1.89 -4.21 16 21 C -0.45 0.72 8.65 101.05 0.87 1.60 16 22 C -0.45 0.77 8.56 101.05 0.87 1.64 16 23 C -0.45 0.41 8.62 101.05 0.87 1.28 16 24 H 0.11 -0.27 7.37 -52.49 -0.39 -0.66 16 25 H 0.09 -0.08 7.84 -52.49 -0.41 -0.50 16 26 H 0.13 -0.13 6.94 -52.49 -0.36 -0.49 16 27 H 0.12 0.07 7.26 -52.49 -0.38 -0.32 16 28 H 0.14 -0.07 6.88 -52.49 -0.36 -0.43 16 29 H 0.15 -0.02 8.06 -52.49 -0.42 -0.44 16 30 H 0.13 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.38 -0.96 8.70 45.56 0.40 -0.57 16 32 H 0.13 -0.06 6.74 -52.48 -0.35 -0.42 16 33 H 0.13 -0.06 7.93 -52.49 -0.42 -0.48 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.13 7.96 -51.92 -0.41 -0.54 16 36 H 0.07 -0.11 7.59 -51.93 -0.39 -0.51 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 39 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 40 H 0.07 -0.04 7.47 -51.93 -0.39 -0.43 16 41 H 0.07 -0.09 7.96 -51.92 -0.41 -0.50 16 42 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 LS Contribution 363.72 15.07 5.48 5.48 Total: 0.00 -4.49 363.72 -9.93 -14.42 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: -5.57 Total: -8.55 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -0.94 Total: 0.01 kcal Atomic # 8 Polarization: -0.24 SS G_CDS: -0.45 Total: -0.70 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: -6.36 Total: -8.73 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.09 Total: -1.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -4.49 -9.93 -14.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.437 kcal (2) G-P(sol) polarization free energy of solvation -4.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds