Wall clock time and date at job start Mon Mar 8 2021 07:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32673 * 1 3 3 C 1.47675 * 120.00088 * 2 1 4 4 C 1.39706 * 119.99322 * 133.46393 * 3 2 1 5 5 C 1.37610 * 119.99945 * 179.97438 * 4 3 2 6 6 C 1.39729 * 119.99612 * 359.97438 * 5 4 3 7 7 C 1.47696 * 120.00154 * 180.02562 * 6 5 4 8 8 C 1.34890 * 125.27142 * 179.97438 * 7 6 5 9 9 C 1.37918 * 114.69338 * 180.02562 * 8 7 6 10 10 C 1.33652 * 115.07023 * 0.02562 * 9 8 7 11 11 C 1.50702 * 125.11463 * 179.73633 * 10 9 8 12 12 O 1.42894 * 109.47483 * 64.99528 * 11 10 9 13 13 Si 1.86293 * 109.47166 * 184.99862 * 11 10 9 14 14 H 1.48500 * 109.47279 * 59.99538 * 13 11 10 15 15 H 1.48500 * 109.47377 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47052 * 299.99519 * 13 11 10 17 17 S 1.75852 * 109.76916 * 359.97438 * 10 9 8 18 18 C 1.39729 * 119.99705 * 0.27835 * 6 5 4 19 19 C 1.37612 * 119.99360 * 359.44166 * 18 6 5 20 20 Si 1.86798 * 120.00007 * 180.02562 * 2 1 3 21 21 C 1.86300 * 109.47113 * 273.19844 * 20 2 1 22 22 C 1.86305 * 109.47219 * 33.19643 * 20 2 1 23 23 C 1.86305 * 109.47279 * 153.19851 * 20 2 1 24 24 H 1.07998 * 119.99989 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00116 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00333 * 359.95026 * 4 3 2 27 27 H 1.08000 * 120.00394 * 180.02562 * 5 4 3 28 28 H 1.08002 * 122.65123 * 0.04870 * 8 7 6 29 29 H 1.07999 * 122.46779 * 180.02562 * 9 8 7 30 30 H 1.09002 * 109.46743 * 304.99648 * 11 10 9 31 31 H 0.96707 * 114.00106 * 60.00193 * 12 11 10 32 32 H 1.08003 * 120.00254 * 179.73052 * 18 6 5 33 33 H 1.07998 * 119.99899 * 180.30562 * 19 18 6 34 34 H 1.08999 * 109.47283 * 59.99817 * 21 20 2 35 35 H 1.09011 * 109.47204 * 180.02562 * 21 20 2 36 36 H 1.08998 * 109.47333 * 299.99602 * 21 20 2 37 37 H 1.09001 * 109.46446 * 60.00228 * 22 20 2 38 38 H 1.09000 * 109.47268 * 179.97438 * 22 20 2 39 39 H 1.08999 * 109.47008 * 300.00079 * 22 20 2 40 40 H 1.08994 * 109.47197 * 65.83743 * 23 20 2 41 41 H 1.09008 * 109.46934 * 185.83814 * 23 20 2 42 42 H 1.08999 * 109.47025 * 305.83223 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3267 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.1352 1.4675 0.8782 5 6 3.8236 2.6590 0.8780 6 6 3.4528 3.6799 -0.0011 7 6 4.1920 4.9586 -0.0018 8 6 3.9265 6.0113 -0.8022 9 6 4.7561 7.0978 -0.6194 10 6 5.6942 6.9424 0.3197 11 6 6.7201 7.9787 0.7001 12 8 6.0633 9.1121 1.2710 13 14 7.9026 7.2544 1.9442 14 1 8.5852 6.0766 1.3510 15 1 8.9139 8.2754 2.3186 16 1 7.1517 6.8339 3.1543 17 16 5.5557 5.3441 1.0399 18 6 2.3792 3.4930 -0.8757 19 6 1.6946 2.2993 -0.8792 20 14 2.2607 -1.6177 -0.0007 21 6 2.4864 -2.2053 1.7527 22 6 1.2983 -2.8900 -0.9630 23 6 3.9290 -1.3713 -0.7926 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 3.4218 0.6785 1.5576 27 1 4.6511 2.8048 1.5565 28 1 3.1271 6.0041 -1.5285 29 1 4.6551 8.0074 -1.1929 30 1 7.2713 8.2874 -0.1882 31 1 5.5522 8.9110 2.0669 32 1 2.0898 4.2837 -1.5521 33 1 0.8679 2.1530 -1.5586 34 1 1.5103 -2.3495 2.2161 35 1 3.0318 -3.1491 1.7524 36 1 3.0495 -1.4610 2.3158 37 1 1.1664 -2.5462 -1.9889 38 1 1.8436 -3.8339 -0.9638 39 1 0.3223 -3.0342 -0.4996 40 1 4.5306 -0.7062 -0.1731 41 1 4.4320 -2.3338 -0.8871 42 1 3.8004 -0.9300 -1.7809 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_11652144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:04:38 Heat of formation + Delta-G solvation = 2.599774 kcal Electronic energy + Delta-G solvation = -20965.110106 eV Core-core repulsion = 17932.480855 eV Total energy + Delta-G solvation = -3032.629252 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.43062 -39.15776 -37.47059 -35.12365 -32.34131 -31.90700 -29.89212 -29.42457 -28.29978 -28.24571 -26.66174 -24.45739 -23.69299 -23.16112 -20.48766 -20.25520 -18.84330 -17.69433 -17.11221 -16.52795 -16.26634 -16.15021 -15.81595 -15.42514 -14.98511 -14.58754 -14.49118 -14.27464 -14.06700 -13.93208 -13.85779 -13.69876 -13.57660 -13.35843 -13.25763 -13.14774 -13.08424 -12.97096 -12.63313 -12.45906 -12.39829 -12.24196 -12.01288 -11.51403 -11.38237 -10.89335 -10.78627 -10.58988 -10.45287 -9.99759 -9.98996 -9.58250 -8.73502 -0.67540 0.35789 0.41607 0.44408 0.72788 1.09493 1.22119 1.34581 1.46891 1.73623 1.83419 1.88594 1.99681 2.24228 2.64631 2.93655 3.43166 3.55766 3.74911 3.88408 3.96261 3.98310 4.34872 4.39654 4.47056 4.55808 4.65548 4.74278 4.80945 4.81438 4.83071 4.85541 4.86831 4.88087 4.93206 5.02103 5.06431 5.12153 5.28996 5.37750 5.46453 5.53851 5.55235 5.57395 5.64942 5.67525 5.81342 6.00996 6.58799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.390 4.390 3 C -0.031 4.031 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.045 4.045 7 C -0.137 4.137 8 C -0.136 4.136 9 C -0.102 4.102 10 C -0.225 4.225 11 C -0.032 4.032 12 O -0.545 6.545 13 Si 0.916 3.084 14 H -0.246 1.246 15 H -0.238 1.238 16 H -0.240 1.240 17 S 0.085 5.915 18 C -0.101 4.101 19 C -0.124 4.124 20 Si 1.105 2.895 21 C -0.459 4.459 22 C -0.458 4.458 23 C -0.463 4.463 24 H 0.123 0.877 25 H 0.090 0.910 26 H 0.143 0.857 27 H 0.125 0.875 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.138 0.862 31 H 0.389 0.611 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 -2.328 -0.225 2.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.430 4.430 3 C -0.031 4.031 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.047 4.047 7 C -0.254 4.254 8 C -0.166 4.166 9 C -0.132 4.132 10 C -0.342 4.342 11 C -0.146 4.146 12 O -0.352 6.352 13 Si 0.738 3.262 14 H -0.170 1.170 15 H -0.161 1.161 16 H -0.163 1.163 17 S 0.352 5.648 18 C -0.121 4.121 19 C -0.142 4.142 20 Si 1.293 2.707 21 C -0.566 4.566 22 C -0.566 4.566 23 C -0.569 4.569 24 H 0.141 0.859 25 H 0.109 0.891 26 H 0.161 0.839 27 H 0.143 0.857 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.155 0.845 31 H 0.239 0.761 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.129 -3.045 1.047 3.223 hybrid contribution -1.302 0.889 -0.984 1.859 sum -1.173 -2.156 0.062 2.456 Atomic orbital electron populations 1.24521 0.95409 1.02678 0.93685 1.28326 1.01432 1.08270 1.04946 1.19310 0.94970 0.93998 0.94871 1.21326 0.95500 0.97585 0.99512 1.21269 1.00180 0.93577 0.98615 1.18224 0.96618 0.91303 0.98575 1.23154 1.01195 0.98306 1.02791 1.20605 1.02401 0.92145 1.01470 1.20182 0.94602 1.00168 0.98218 1.25106 1.05662 0.98875 1.04584 1.24329 0.97068 0.87537 1.05664 1.86505 1.69475 1.31846 1.47348 0.85965 0.80301 0.80658 0.79306 1.16993 1.16059 1.16326 1.84216 1.30060 1.10756 1.39814 1.21306 0.94450 0.98162 0.98160 1.21464 1.00316 0.92610 0.99791 0.77494 0.64573 0.62015 0.66598 1.26261 1.04993 1.06285 1.19082 1.26233 1.09233 1.12118 1.08976 1.26328 1.18554 1.04654 1.07358 0.85927 0.89126 0.83946 0.85693 0.82436 0.82442 0.84491 0.76135 0.84273 0.84457 0.90917 0.90700 0.91271 0.91204 0.90698 0.90561 0.91563 0.90847 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.34 13.31 66.65 0.89 1.22 16 2 C -0.39 0.54 4.41 23.60 0.10 0.64 16 3 C -0.03 -0.07 5.26 -20.08 -0.11 -0.17 16 4 C -0.12 -0.30 8.62 22.48 0.19 -0.10 16 5 C -0.12 -0.51 9.58 22.48 0.22 -0.30 16 6 C -0.05 -0.23 5.88 -20.06 -0.12 -0.35 16 7 C -0.14 -0.67 6.37 24.00 0.15 -0.52 16 8 C -0.14 -0.35 9.65 21.42 0.21 -0.15 16 9 C -0.10 -0.20 10.03 21.15 0.21 0.01 16 10 C -0.23 -0.50 5.70 24.65 0.14 -0.36 16 11 C -0.03 0.01 2.96 71.24 0.21 0.22 16 12 O -0.54 -0.31 12.88 -148.98 -1.92 -2.23 16 13 Si 0.92 0.34 26.25 68.60 1.80 2.15 16 14 H -0.25 -0.54 7.11 99.48 0.71 0.16 16 15 H -0.24 -0.44 7.11 99.48 0.71 0.27 16 16 H -0.24 -0.26 7.11 99.48 0.71 0.45 16 17 S 0.08 0.34 19.48 -56.49 -1.10 -0.76 16 18 C -0.10 -0.30 9.52 22.48 0.21 -0.09 16 19 C -0.12 -0.28 9.31 22.48 0.21 -0.07 16 20 Si 1.11 -5.28 11.15 68.60 0.76 -4.51 16 21 C -0.46 1.70 8.65 113.37 0.98 2.68 16 22 C -0.46 1.94 8.56 113.37 0.97 2.91 16 23 C -0.46 0.65 8.62 113.37 0.98 1.63 16 24 H 0.12 -0.79 7.37 -2.91 -0.02 -0.81 16 25 H 0.09 -0.18 7.84 -2.91 -0.02 -0.20 16 26 H 0.14 -0.22 6.94 -2.91 -0.02 -0.24 16 27 H 0.13 0.33 7.26 -2.91 -0.02 0.31 16 28 H 0.16 -0.19 6.88 -2.91 -0.02 -0.21 16 29 H 0.16 -0.14 8.06 -2.91 -0.02 -0.16 16 30 H 0.14 -0.37 7.96 -2.39 -0.02 -0.39 16 31 H 0.39 -2.03 8.70 -74.05 -0.64 -2.68 16 32 H 0.14 -0.11 6.74 -2.91 -0.02 -0.13 16 33 H 0.14 -0.12 7.93 -2.91 -0.02 -0.14 16 34 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 35 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 36 H 0.07 -0.24 7.59 -2.39 -0.02 -0.26 16 37 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 38 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 39 H 0.08 -0.40 7.69 -2.39 -0.02 -0.42 16 40 H 0.07 -0.03 7.47 -2.39 -0.02 -0.05 16 41 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 42 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 Total: 0.00 -10.20 363.72 6.12 -4.09 By element: Atomic # 1 Polarization: -7.06 SS G_CDS: 1.12 Total: -5.95 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 5.45 Total: 7.21 kcal Atomic # 8 Polarization: -0.31 SS G_CDS: -1.92 Total: -2.23 kcal Atomic # 14 Polarization: -4.93 SS G_CDS: 2.57 Total: -2.37 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.10 Total: -0.76 kcal Total: -10.20 6.12 -4.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.687 kcal (2) G-P(sol) polarization free energy of solvation -10.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds