Wall clock time and date at job start Mon Mar 8 2021 07:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32572 * 1 3 3 C 1.47811 * 119.99850 * 2 1 4 4 C 1.39543 * 120.14090 * 313.46243 * 3 2 1 5 5 C 1.37967 * 119.85567 * 180.02562 * 4 3 2 6 6 C 1.38342 * 120.14463 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.86097 * 179.97438 * 6 5 4 8 8 O 1.42897 * 109.47020 * 89.99664 * 7 6 5 9 9 C 1.35993 * 116.99811 * 180.02562 * 8 7 6 10 10 C 1.38522 * 120.07188 * 359.72719 * 9 8 7 11 11 C 1.38284 * 119.99822 * 180.27401 * 10 9 8 12 12 C 1.38214 * 120.14740 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.92713 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.46889 * 120.02125 * 13 12 11 15 15 Si 1.86298 * 109.47007 * 0.02562 * 13 12 11 16 16 H 1.48508 * 109.46984 * 180.02562 * 15 13 12 17 17 H 1.48499 * 109.47152 * 299.99566 * 15 13 12 18 18 H 1.48497 * 109.47315 * 59.99929 * 15 13 12 19 19 C 1.38280 * 120.14571 * 359.97438 * 12 11 10 20 20 C 1.38522 * 119.99916 * 0.02562 * 19 12 11 21 21 O 1.35998 * 120.07180 * 180.02562 * 20 19 12 22 22 C 1.42898 * 116.99878 * 359.97352 * 21 20 19 23 23 C 1.38347 * 120.28303 * 0.25459 * 6 5 4 24 24 C 1.37971 * 120.14245 * 359.48957 * 23 6 5 25 25 Si 1.86797 * 120.00005 * 179.97438 * 2 1 3 26 26 C 1.86298 * 109.47449 * 273.18136 * 25 2 1 27 27 C 1.86305 * 109.46919 * 33.18295 * 25 2 1 28 28 C 1.86300 * 109.46999 * 153.18023 * 25 2 1 29 29 H 1.07998 * 120.00119 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99780 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.07168 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.92904 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46723 * 329.99757 * 7 6 5 34 34 H 1.08994 * 109.46994 * 210.00131 * 7 6 5 35 35 H 1.08001 * 120.00075 * 0.29383 * 10 9 8 36 36 H 1.07996 * 119.93154 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47231 * 240.02100 * 13 12 11 38 38 H 0.96701 * 113.99793 * 179.97438 * 14 13 12 39 39 H 1.08002 * 120.00146 * 180.02562 * 19 12 11 40 40 H 1.09009 * 109.46976 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47669 * 299.99760 * 22 21 20 42 42 H 1.09000 * 109.47030 * 60.00817 * 22 21 20 43 43 H 1.08005 * 119.92661 * 179.74861 * 23 6 5 44 44 H 1.08000 * 120.07242 * 180.25425 * 24 23 6 45 45 H 1.09005 * 109.46917 * 59.99704 * 26 25 2 46 46 H 1.08996 * 109.47287 * 180.02562 * 26 25 2 47 47 H 1.08998 * 109.46886 * 300.00320 * 26 25 2 48 48 H 1.08999 * 109.47345 * 59.99844 * 27 25 2 49 49 H 1.09004 * 109.46815 * 180.02562 * 27 25 2 50 50 H 1.09002 * 109.46747 * 299.99496 * 27 25 2 51 51 H 1.08991 * 109.47112 * 65.84530 * 28 25 2 52 52 H 1.08998 * 109.46729 * 185.84526 * 28 25 2 53 53 H 1.08997 * 109.46974 * 305.84139 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2801 0.0000 4 6 1.6962 2.3020 -0.8759 5 6 2.3904 3.4942 -0.8713 6 6 3.4502 3.6777 -0.0012 7 6 4.2044 4.9824 -0.0020 8 8 3.5968 5.8844 0.9249 9 6 4.1593 7.1166 1.0464 10 6 5.2746 7.4476 0.2945 11 6 5.8488 8.6990 0.4235 12 6 5.3127 9.6215 1.3020 13 6 5.9428 10.9837 1.4390 14 8 4.9864 11.9878 1.0940 15 14 7.4108 11.1063 0.2986 16 1 8.0321 12.4484 0.4340 17 1 8.4047 10.0629 0.6571 18 1 6.9662 10.9054 -1.1040 19 6 4.1995 9.2974 2.0556 20 6 3.6194 8.0457 1.9312 21 8 2.5242 7.7255 2.6713 22 6 2.0246 8.7286 3.5579 23 6 3.8243 2.6665 0.8656 24 6 3.1349 1.4713 0.8747 25 14 2.2597 -1.6177 0.0007 26 6 2.4858 -2.2035 1.7547 27 6 1.2971 -2.8909 -0.9601 28 6 3.9277 -1.3721 -0.7919 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 0.8693 2.1598 -1.5559 32 1 2.1064 4.2858 -1.5490 33 1 4.1785 5.4164 -1.0015 34 1 5.2393 4.8040 0.2899 35 1 5.6955 6.7286 -0.3926 36 1 6.7185 8.9558 -0.1630 37 1 6.2691 11.1312 2.4685 38 1 5.3238 12.8916 1.1600 39 1 3.7823 10.0202 2.7411 40 1 1.1515 8.3447 4.0858 41 1 2.7977 8.9941 4.2789 42 1 1.7428 9.6121 2.9851 43 1 4.6551 2.8144 1.5397 44 1 3.4253 0.6842 1.5547 45 1 1.5099 -2.3472 2.2184 46 1 3.0312 -3.1472 1.7551 47 1 3.0490 -1.4586 2.3168 48 1 1.1648 -2.5482 -1.9863 49 1 1.8419 -3.8351 -0.9593 50 1 0.3212 -3.0347 -0.4963 51 1 4.5294 -0.7064 -0.1732 52 1 4.4306 -2.3345 -0.8856 53 1 3.7988 -0.9317 -1.7806 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_11652372.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:07:18 Heat of formation + Delta-G solvation = -77.294072 kcal Electronic energy + Delta-G solvation = -30472.399033 eV Core-core repulsion = 26398.713455 eV Total energy + Delta-G solvation = -4073.685578 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 372.172 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.58892 -40.37532 -39.20436 -38.70595 -37.02918 -35.18592 -32.26829 -31.86670 -31.43668 -30.97001 -29.53202 -28.57318 -28.42236 -28.38387 -27.20577 -26.00120 -23.80283 -23.47956 -22.62831 -22.07499 -20.36216 -19.47488 -18.58117 -18.09359 -17.85453 -17.21823 -16.99814 -16.48071 -16.25888 -16.20163 -15.89487 -15.66386 -15.55508 -15.17038 -14.86309 -14.65830 -14.39152 -14.27089 -14.16941 -14.04684 -13.94698 -13.76026 -13.63403 -13.47072 -13.41524 -13.29034 -13.23174 -13.11772 -12.96285 -12.74251 -12.50203 -12.29942 -12.18857 -12.12609 -11.98631 -11.86580 -11.74441 -11.64644 -11.33027 -10.89597 -10.85890 -10.38556 -10.37385 -9.79854 -9.64939 -9.19051 -8.71921 0.08551 0.30740 0.40134 0.56084 1.13072 1.16377 1.41987 1.48950 1.72395 1.86711 1.89201 2.08132 2.34268 2.38780 2.57526 2.65534 3.08651 3.38224 3.69201 3.77352 3.85230 3.91289 3.96916 4.01269 4.11723 4.19621 4.27100 4.27550 4.32375 4.32982 4.44961 4.51470 4.55303 4.66418 4.66532 4.69086 4.71311 4.72347 4.74553 4.75989 4.79478 4.80324 4.82169 4.98375 5.09580 5.16099 5.20817 5.25891 5.44468 5.49339 5.51066 5.54876 5.57963 5.63844 5.67083 5.67362 5.84108 6.11113 6.15958 6.55409 6.67097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.375 4.375 3 C -0.020 4.020 4 C -0.122 4.122 5 C -0.089 4.089 6 C -0.103 4.103 7 C 0.100 3.900 8 O -0.296 6.296 9 C 0.108 3.892 10 C -0.169 4.169 11 C -0.120 4.120 12 C -0.074 4.074 13 C -0.079 4.079 14 O -0.545 6.545 15 Si 0.947 3.053 16 H -0.257 1.257 17 H -0.249 1.249 18 H -0.247 1.247 19 C -0.142 4.142 20 C 0.101 3.899 21 O -0.304 6.304 22 C 0.025 3.975 23 C -0.089 4.089 24 C -0.123 4.123 25 Si 1.050 2.950 26 C -0.448 4.448 27 C -0.449 4.449 28 C -0.446 4.446 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.124 0.876 37 H 0.076 0.924 38 H 0.380 0.620 39 H 0.140 0.860 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.070 0.930 52 H 0.069 0.931 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -0.048 0.486 1.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.416 4.416 3 C -0.020 4.020 4 C -0.140 4.140 5 C -0.108 4.108 6 C -0.103 4.103 7 C 0.025 3.975 8 O -0.210 6.210 9 C 0.062 3.938 10 C -0.187 4.187 11 C -0.138 4.138 12 C -0.074 4.074 13 C -0.189 4.189 14 O -0.351 6.351 15 Si 0.770 3.230 16 H -0.181 1.181 17 H -0.173 1.173 18 H -0.170 1.170 19 C -0.161 4.161 20 C 0.055 3.945 21 O -0.218 6.218 22 C -0.070 4.070 23 C -0.107 4.107 24 C -0.141 4.141 25 Si 1.241 2.759 26 C -0.556 4.556 27 C -0.557 4.557 28 C -0.554 4.554 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.142 0.858 37 H 0.094 0.906 38 H 0.227 0.773 39 H 0.157 0.843 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.090 0.910 52 H 0.088 0.912 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.647 -0.722 -0.057 1.800 hybrid contribution 0.023 0.954 0.349 1.016 sum 1.671 0.231 0.291 1.711 Atomic orbital electron populations 1.24302 0.95534 1.01933 0.94563 1.28038 1.01057 1.08226 1.04281 1.19030 0.94775 0.93255 0.94963 1.21294 1.00038 0.92860 0.99772 1.20994 0.94250 0.97258 0.98248 1.19413 0.98253 0.93995 0.98673 1.21629 0.96072 0.86937 0.92829 1.86283 1.53929 1.20709 1.60038 1.18251 0.93805 0.85327 0.96422 1.20964 0.96825 0.98494 1.02441 1.20650 1.00666 0.93674 0.98780 1.18920 0.96847 0.93949 0.97720 1.24694 1.00589 0.87779 1.05840 1.86510 1.39621 1.17538 1.91409 0.85734 0.76088 0.81036 0.80151 1.18146 1.17315 1.17012 1.20873 0.97601 0.94760 1.02850 1.18268 0.89734 0.92379 0.94103 1.86203 1.41389 1.41069 1.53103 1.23107 0.99607 0.91837 0.92440 1.20977 0.99521 0.93005 0.97196 1.21191 0.95751 0.97748 0.99370 0.78345 0.66423 0.63431 0.67672 1.26139 1.04829 1.06046 1.18558 1.26142 1.08743 1.11875 1.08908 1.26107 1.17055 1.04650 1.07589 0.87711 0.88735 0.85838 0.85880 0.91092 0.91046 0.84299 0.85802 0.90584 0.77277 0.84255 0.88049 0.92627 0.92482 0.85756 0.85543 0.91123 0.90981 0.91171 0.91042 0.90894 0.91191 0.91037 0.91185 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.04 13.31 28.83 0.38 0.42 16 2 C -0.37 -0.02 4.41 -37.57 -0.17 -0.18 16 3 C -0.02 -0.03 5.26 -105.01 -0.55 -0.58 16 4 C -0.12 -0.22 9.33 -39.19 -0.37 -0.59 16 5 C -0.09 -0.18 9.68 -39.64 -0.38 -0.56 16 6 C -0.10 -0.22 5.51 -104.54 -0.58 -0.80 16 7 C 0.10 0.14 4.86 36.01 0.18 0.31 16 8 O -0.30 -1.30 9.91 -34.20 -0.34 -1.64 16 9 C 0.11 0.43 6.70 -39.12 -0.26 0.17 16 10 C -0.17 -0.34 9.04 -39.46 -0.36 -0.70 16 11 C -0.12 -0.23 8.66 -39.57 -0.34 -0.58 16 12 C -0.07 -0.17 5.42 -104.61 -0.57 -0.74 16 13 C -0.08 0.00 2.81 36.01 0.10 0.10 16 14 O -0.54 -0.21 12.74 -35.23 -0.45 -0.65 16 15 Si 0.95 -0.39 25.06 -169.99 -4.26 -4.65 16 16 H -0.26 0.10 7.11 56.52 0.40 0.50 16 17 H -0.25 -0.01 7.11 56.52 0.40 0.40 16 18 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 19 C -0.14 -0.39 8.60 -39.46 -0.34 -0.73 16 20 C 0.10 0.43 6.70 -39.12 -0.26 0.17 16 21 O -0.30 -1.37 10.28 -34.21 -0.35 -1.72 16 22 C 0.03 0.01 9.81 101.05 0.99 1.00 16 23 C -0.09 -0.15 9.68 -39.64 -0.38 -0.53 16 24 C -0.12 -0.17 8.65 -39.20 -0.34 -0.51 16 25 Si 1.05 -1.98 11.16 -169.99 -1.90 -3.88 16 26 C -0.45 0.56 8.65 101.05 0.87 1.43 16 27 C -0.45 0.65 8.56 101.05 0.87 1.51 16 28 C -0.45 0.37 8.63 101.05 0.87 1.24 16 29 H 0.10 -0.21 7.36 -52.49 -0.39 -0.60 16 30 H 0.09 0.01 7.84 -52.49 -0.41 -0.41 16 31 H 0.12 0.07 7.94 -52.49 -0.42 -0.35 16 32 H 0.12 0.09 8.06 -52.48 -0.42 -0.33 16 33 H 0.07 0.00 7.61 -51.93 -0.40 -0.40 16 34 H 0.07 -0.02 7.60 -51.93 -0.39 -0.42 16 35 H 0.14 -0.06 6.30 -52.49 -0.33 -0.39 16 36 H 0.12 0.04 4.86 -52.49 -0.26 -0.22 16 37 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 38 H 0.38 -1.56 8.74 45.56 0.40 -1.16 16 39 H 0.14 0.17 6.30 -52.49 -0.33 -0.16 16 40 H 0.10 -0.11 8.14 -51.92 -0.42 -0.53 16 41 H 0.06 -0.04 7.66 -51.93 -0.40 -0.44 16 42 H 0.06 -0.02 7.66 -51.93 -0.40 -0.41 16 43 H 0.12 0.02 8.06 -52.48 -0.42 -0.40 16 44 H 0.13 -0.06 6.98 -52.49 -0.37 -0.43 16 45 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 46 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 47 H 0.07 -0.08 7.61 -51.93 -0.39 -0.48 16 48 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 49 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 50 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 51 H 0.07 -0.04 7.48 -51.93 -0.39 -0.43 16 52 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 53 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 LS Contribution 434.38 15.07 6.55 6.55 Total: 0.00 -7.50 434.38 -9.21 -16.71 By element: Atomic # 1 Polarization: -2.73 SS G_CDS: -7.83 Total: -10.56 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -0.63 Total: -0.14 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: -1.14 Total: -4.02 kcal Atomic # 14 Polarization: -2.38 SS G_CDS: -6.16 Total: -8.54 kcal Total LS contribution 6.55 Total: 6.55 kcal Total: -7.50 -9.21 -16.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652372.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.584 kcal (2) G-P(sol) polarization free energy of solvation -7.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds