Wall clock time and date at job start Mon Mar 8 2021 07:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32572 * 1 3 3 C 1.47811 * 119.99850 * 2 1 4 4 C 1.39543 * 120.14090 * 313.46243 * 3 2 1 5 5 C 1.37967 * 119.85567 * 180.02562 * 4 3 2 6 6 C 1.38342 * 120.14463 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.86097 * 179.97438 * 6 5 4 8 8 O 1.42897 * 109.47020 * 89.99664 * 7 6 5 9 9 C 1.35993 * 116.99811 * 180.02562 * 8 7 6 10 10 C 1.38522 * 120.07188 * 359.72719 * 9 8 7 11 11 C 1.38284 * 119.99822 * 180.27401 * 10 9 8 12 12 C 1.38214 * 120.14740 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.92713 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.46889 * 120.02125 * 13 12 11 15 15 Si 1.86298 * 109.47007 * 0.02562 * 13 12 11 16 16 H 1.48508 * 109.46984 * 180.02562 * 15 13 12 17 17 H 1.48499 * 109.47152 * 299.99566 * 15 13 12 18 18 H 1.48497 * 109.47315 * 59.99929 * 15 13 12 19 19 C 1.38280 * 120.14571 * 359.97438 * 12 11 10 20 20 C 1.38522 * 119.99916 * 0.02562 * 19 12 11 21 21 O 1.35998 * 120.07180 * 180.02562 * 20 19 12 22 22 C 1.42898 * 116.99878 * 359.97352 * 21 20 19 23 23 C 1.38347 * 120.28303 * 0.25459 * 6 5 4 24 24 C 1.37971 * 120.14245 * 359.48957 * 23 6 5 25 25 Si 1.86797 * 120.00005 * 179.97438 * 2 1 3 26 26 C 1.86298 * 109.47449 * 273.18136 * 25 2 1 27 27 C 1.86305 * 109.46919 * 33.18295 * 25 2 1 28 28 C 1.86300 * 109.46999 * 153.18023 * 25 2 1 29 29 H 1.07998 * 120.00119 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99780 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.07168 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.92904 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46723 * 329.99757 * 7 6 5 34 34 H 1.08994 * 109.46994 * 210.00131 * 7 6 5 35 35 H 1.08001 * 120.00075 * 0.29383 * 10 9 8 36 36 H 1.07996 * 119.93154 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47231 * 240.02100 * 13 12 11 38 38 H 0.96701 * 113.99793 * 179.97438 * 14 13 12 39 39 H 1.08002 * 120.00146 * 180.02562 * 19 12 11 40 40 H 1.09009 * 109.46976 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47669 * 299.99760 * 22 21 20 42 42 H 1.09000 * 109.47030 * 60.00817 * 22 21 20 43 43 H 1.08005 * 119.92661 * 179.74861 * 23 6 5 44 44 H 1.08000 * 120.07242 * 180.25425 * 24 23 6 45 45 H 1.09005 * 109.46917 * 59.99704 * 26 25 2 46 46 H 1.08996 * 109.47287 * 180.02562 * 26 25 2 47 47 H 1.08998 * 109.46886 * 300.00320 * 26 25 2 48 48 H 1.08999 * 109.47345 * 59.99844 * 27 25 2 49 49 H 1.09004 * 109.46815 * 180.02562 * 27 25 2 50 50 H 1.09002 * 109.46747 * 299.99496 * 27 25 2 51 51 H 1.08991 * 109.47112 * 65.84530 * 28 25 2 52 52 H 1.08998 * 109.46729 * 185.84526 * 28 25 2 53 53 H 1.08997 * 109.46974 * 305.84139 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2801 0.0000 4 6 1.6962 2.3020 -0.8759 5 6 2.3904 3.4942 -0.8713 6 6 3.4502 3.6777 -0.0012 7 6 4.2044 4.9824 -0.0020 8 8 3.5968 5.8844 0.9249 9 6 4.1593 7.1166 1.0464 10 6 5.2746 7.4476 0.2945 11 6 5.8488 8.6990 0.4235 12 6 5.3127 9.6215 1.3020 13 6 5.9428 10.9837 1.4390 14 8 4.9864 11.9878 1.0940 15 14 7.4108 11.1063 0.2986 16 1 8.0321 12.4484 0.4340 17 1 8.4047 10.0629 0.6571 18 1 6.9662 10.9054 -1.1040 19 6 4.1995 9.2974 2.0556 20 6 3.6194 8.0457 1.9312 21 8 2.5242 7.7255 2.6713 22 6 2.0246 8.7286 3.5579 23 6 3.8243 2.6665 0.8656 24 6 3.1349 1.4713 0.8747 25 14 2.2597 -1.6177 0.0007 26 6 2.4858 -2.2035 1.7547 27 6 1.2971 -2.8909 -0.9601 28 6 3.9277 -1.3721 -0.7919 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 0.8693 2.1598 -1.5559 32 1 2.1064 4.2858 -1.5490 33 1 4.1785 5.4164 -1.0015 34 1 5.2393 4.8040 0.2899 35 1 5.6955 6.7286 -0.3926 36 1 6.7185 8.9558 -0.1630 37 1 6.2691 11.1312 2.4685 38 1 5.3238 12.8916 1.1600 39 1 3.7823 10.0202 2.7411 40 1 1.1515 8.3447 4.0858 41 1 2.7977 8.9941 4.2789 42 1 1.7428 9.6121 2.9851 43 1 4.6551 2.8144 1.5397 44 1 3.4253 0.6842 1.5547 45 1 1.5099 -2.3472 2.2184 46 1 3.0312 -3.1472 1.7551 47 1 3.0490 -1.4586 2.3168 48 1 1.1648 -2.5482 -1.9863 49 1 1.8419 -3.8351 -0.9593 50 1 0.3212 -3.0347 -0.4963 51 1 4.5294 -0.7064 -0.1732 52 1 4.4306 -2.3345 -0.8856 53 1 3.7988 -0.9317 -1.7806 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_11652372.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:07:16 Heat of formation + Delta-G solvation = -68.803443 kcal Electronic energy + Delta-G solvation = -30472.030852 eV Core-core repulsion = 26398.713455 eV Total energy + Delta-G solvation = -4073.317396 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 372.172 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.73500 -40.46776 -39.35952 -38.78244 -37.06649 -35.21517 -32.33797 -31.95697 -31.55463 -31.05761 -29.41797 -28.58270 -28.35037 -28.29022 -27.25034 -26.05779 -23.89451 -23.57644 -22.73595 -22.17026 -20.38383 -19.62588 -18.57921 -18.20789 -17.95144 -17.31526 -17.08592 -16.58568 -16.33371 -16.26751 -15.91783 -15.75029 -15.63798 -15.22626 -14.89343 -14.65429 -14.44115 -14.28919 -14.11807 -14.05807 -13.85230 -13.71538 -13.66043 -13.52967 -13.42871 -13.18606 -13.15222 -13.04012 -12.93392 -12.75446 -12.54259 -12.34744 -12.26905 -12.17550 -12.05669 -11.90980 -11.80537 -11.67913 -11.28495 -10.82690 -10.77457 -10.34267 -10.33446 -9.90771 -9.78615 -9.25402 -8.89975 0.00498 0.16145 0.23713 0.45142 1.17000 1.19136 1.46974 1.52579 1.82171 1.91869 2.00906 2.13437 2.29146 2.31293 2.52011 2.66343 2.99099 3.41821 3.60313 3.74555 3.80004 3.84958 3.91704 3.97471 4.05569 4.15360 4.22126 4.22780 4.31788 4.34054 4.37156 4.48765 4.50921 4.62010 4.66029 4.68449 4.77623 4.82473 4.84491 4.86416 4.86921 4.88670 4.89169 4.96102 4.97530 5.08211 5.08949 5.21305 5.35538 5.48197 5.55087 5.55809 5.56622 5.59241 5.66452 5.68109 5.82672 6.01949 6.06008 6.52353 6.82123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.390 4.390 3 C -0.028 4.028 4 C -0.136 4.136 5 C -0.101 4.101 6 C -0.116 4.116 7 C 0.098 3.902 8 O -0.318 6.318 9 C 0.087 3.913 10 C -0.166 4.166 11 C -0.128 4.128 12 C -0.084 4.084 13 C -0.080 4.080 14 O -0.563 6.563 15 Si 0.979 3.021 16 H -0.254 1.254 17 H -0.255 1.255 18 H -0.270 1.270 19 C -0.147 4.147 20 C 0.080 3.920 21 O -0.331 6.331 22 C 0.019 3.981 23 C -0.099 4.099 24 C -0.131 4.131 25 Si 1.107 2.893 26 C -0.459 4.459 27 C -0.458 4.458 28 C -0.460 4.460 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.160 0.840 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.398 0.602 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.068 0.932 52 H 0.074 0.926 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.254 -0.083 0.753 2.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.430 4.430 3 C -0.028 4.028 4 C -0.154 4.154 5 C -0.119 4.119 6 C -0.117 4.117 7 C 0.024 3.976 8 O -0.233 6.233 9 C 0.042 3.958 10 C -0.185 4.185 11 C -0.146 4.146 12 C -0.085 4.085 13 C -0.190 4.190 14 O -0.372 6.372 15 Si 0.803 3.197 16 H -0.178 1.178 17 H -0.179 1.179 18 H -0.195 1.195 19 C -0.165 4.165 20 C 0.035 3.965 21 O -0.245 6.245 22 C -0.075 4.075 23 C -0.117 4.117 24 C -0.149 4.149 25 Si 1.295 2.705 26 C -0.566 4.566 27 C -0.566 4.566 28 C -0.567 4.567 29 H 0.142 0.858 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.178 0.822 36 H 0.156 0.844 37 H 0.115 0.885 38 H 0.249 0.751 39 H 0.168 0.832 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.154 0.846 44 H 0.160 0.840 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.093 0.907 51 H 0.087 0.913 52 H 0.093 0.907 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.279 -0.720 0.219 2.400 hybrid contribution -0.193 1.000 0.259 1.051 sum 2.086 0.280 0.477 2.158 Atomic orbital electron populations 1.24476 0.95580 1.02491 0.94163 1.28458 1.01430 1.08532 1.04531 1.19295 0.94955 0.93838 0.94755 1.21492 1.00448 0.93115 1.00321 1.21178 0.94490 0.97641 0.98627 1.19594 0.98583 0.94523 0.98952 1.21775 0.96570 0.86271 0.93020 1.86240 1.54873 1.21237 1.60956 1.18516 0.94683 0.85390 0.97255 1.21225 0.96099 0.99017 1.02151 1.20926 1.01136 0.93675 0.98881 1.19298 0.96666 0.95196 0.97308 1.24767 1.00242 0.86685 1.07318 1.86460 1.40321 1.18901 1.91553 0.85277 0.75297 0.80812 0.78275 1.17828 1.17881 1.19490 1.21038 0.97819 0.94482 1.03200 1.18579 0.90116 0.93180 0.94669 1.86155 1.41768 1.42767 1.53836 1.23315 1.00367 0.91526 0.92317 1.21219 0.99991 0.93127 0.97324 1.21450 0.95699 0.98153 0.99614 0.77476 0.64723 0.61667 0.66630 1.26257 1.04947 1.06329 1.19081 1.26240 1.09218 1.12206 1.08932 1.26284 1.18278 1.04769 1.07349 0.85849 0.89593 0.85182 0.85275 0.89984 0.89517 0.82224 0.84397 0.88527 0.75110 0.83188 0.86818 0.91465 0.91952 0.84601 0.83959 0.91072 0.90569 0.91238 0.91253 0.90569 0.90691 0.91317 0.90729 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.06 13.31 66.67 0.89 0.95 16 2 C -0.39 -0.13 4.41 23.65 0.10 -0.02 16 3 C -0.03 -0.11 5.26 -20.12 -0.11 -0.22 16 4 C -0.14 -0.68 9.33 22.52 0.21 -0.47 16 5 C -0.10 -0.56 9.68 22.23 0.22 -0.34 16 6 C -0.12 -0.64 5.51 -19.81 -0.11 -0.74 16 7 C 0.10 0.35 4.86 71.24 0.35 0.70 16 8 O -0.32 -3.30 9.91 -79.63 -0.79 -4.09 16 9 C 0.09 0.80 6.70 22.57 0.15 0.96 16 10 C -0.17 -0.75 9.04 22.35 0.20 -0.55 16 11 C -0.13 -0.51 8.66 22.27 0.19 -0.32 16 12 C -0.08 -0.39 5.42 -19.86 -0.11 -0.49 16 13 C -0.08 0.06 2.81 71.24 0.20 0.26 16 14 O -0.56 -0.05 12.74 -148.98 -1.90 -1.95 16 15 Si 0.98 -1.48 25.06 68.60 1.72 0.24 16 16 H -0.25 0.53 7.11 99.48 0.71 1.23 16 17 H -0.25 0.19 7.11 99.48 0.71 0.90 16 18 H -0.27 -0.60 7.11 99.48 0.71 0.11 16 19 C -0.15 -0.90 8.60 22.35 0.19 -0.71 16 20 C 0.08 0.79 6.70 22.57 0.15 0.94 16 21 O -0.33 -3.51 10.28 -79.69 -0.82 -4.33 16 22 C 0.02 0.03 9.81 113.37 1.11 1.14 16 23 C -0.10 -0.42 9.68 22.23 0.22 -0.21 16 24 C -0.13 -0.45 8.65 22.52 0.19 -0.25 16 25 Si 1.11 -4.54 11.16 68.60 0.77 -3.77 16 26 C -0.46 1.40 8.65 113.37 0.98 2.38 16 27 C -0.46 1.63 8.56 113.37 0.97 2.60 16 28 C -0.46 0.70 8.63 113.37 0.98 1.68 16 29 H 0.12 -0.57 7.36 -2.91 -0.02 -0.59 16 30 H 0.09 0.08 7.84 -2.91 -0.02 0.06 16 31 H 0.13 0.33 7.94 -2.91 -0.02 0.31 16 32 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 33 H 0.08 0.05 7.61 -2.39 -0.02 0.03 16 34 H 0.09 -0.02 7.60 -2.39 -0.02 -0.04 16 35 H 0.16 -0.16 6.30 -2.91 -0.02 -0.18 16 36 H 0.14 0.05 4.86 -2.91 -0.01 0.03 16 37 H 0.10 -0.48 7.96 -2.39 -0.02 -0.50 16 38 H 0.40 -3.66 8.74 -74.06 -0.65 -4.31 16 39 H 0.15 0.41 6.30 -2.91 -0.02 0.39 16 40 H 0.11 -0.19 8.14 -2.38 -0.02 -0.21 16 41 H 0.07 -0.08 7.66 -2.39 -0.02 -0.10 16 42 H 0.06 0.01 7.66 -2.39 -0.02 -0.01 16 43 H 0.14 0.13 8.06 -2.91 -0.02 0.11 16 44 H 0.14 -0.12 6.98 -2.91 -0.02 -0.14 16 45 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 46 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 47 H 0.07 -0.19 7.61 -2.39 -0.02 -0.21 16 48 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 49 H 0.08 -0.30 7.96 -2.38 -0.02 -0.32 16 50 H 0.07 -0.33 7.69 -2.39 -0.02 -0.35 16 51 H 0.07 -0.07 7.48 -2.39 -0.02 -0.08 16 52 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 53 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 Total: 0.00 -18.06 434.38 6.97 -11.09 By element: Atomic # 1 Polarization: -5.47 SS G_CDS: 1.01 Total: -4.46 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 6.98 Total: 7.28 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -3.51 Total: -10.37 kcal Atomic # 14 Polarization: -6.02 SS G_CDS: 2.48 Total: -3.53 kcal Total: -18.06 6.97 -11.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652372.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.711 kcal (2) G-P(sol) polarization free energy of solvation -18.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds