Wall clock time and date at job start Mon Mar 8 2021 07:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32563 * 1 3 3 C 1.47819 * 120.00161 * 2 1 4 4 C 1.39559 * 120.10175 * 226.53120 * 3 2 1 5 5 C 1.38066 * 120.01468 * 179.72736 * 4 3 2 6 6 C 1.38165 * 120.22880 * 0.50477 * 5 4 3 7 7 C 1.50700 * 119.89485 * 179.76991 * 6 5 4 8 8 O 1.42902 * 109.46790 * 254.72045 * 7 6 5 9 9 Si 1.86296 * 109.47452 * 14.72461 * 7 6 5 10 10 H 1.48500 * 109.46835 * 60.00071 * 9 7 6 11 11 H 1.48498 * 109.46916 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46874 * 300.00112 * 9 7 6 13 13 C 1.39087 * 120.20480 * 359.49138 * 6 5 4 14 14 S 1.76204 * 120.00922 * 180.27296 * 13 6 5 15 15 C 1.81397 * 102.99689 * 180.02562 * 14 13 6 16 16 C 1.53000 * 109.46844 * 180.02562 * 15 14 13 17 17 C 1.38704 * 119.97832 * 0.25629 * 13 6 5 18 18 Si 1.86798 * 119.99598 * 180.02562 * 2 1 3 19 19 C 1.86303 * 109.47078 * 181.51102 * 18 2 1 20 20 C 1.86295 * 109.47225 * 301.51019 * 18 2 1 21 21 C 1.86299 * 109.47160 * 61.51053 * 18 2 1 22 22 H 1.07995 * 120.00593 * 180.02562 * 1 2 3 23 23 H 1.08000 * 119.99755 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.99422 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.88463 * 180.27527 * 5 4 3 26 26 H 1.09001 * 109.47186 * 134.72693 * 7 6 5 27 27 H 0.96707 * 113.99940 * 60.00537 * 8 7 6 28 28 H 1.09000 * 109.47406 * 299.99950 * 15 14 13 29 29 H 1.08997 * 109.47335 * 60.00231 * 15 14 13 30 30 H 1.09004 * 109.47110 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.47269 * 299.99715 * 16 15 14 32 32 H 1.08997 * 109.47696 * 60.00107 * 16 15 14 33 33 H 1.08007 * 120.11511 * 179.97438 * 17 13 6 34 34 H 1.09000 * 109.46910 * 53.64882 * 19 18 2 35 35 H 1.08991 * 109.47119 * 173.65244 * 19 18 2 36 36 H 1.08998 * 109.46736 * 293.65292 * 19 18 2 37 37 H 1.08999 * 109.47191 * 60.00194 * 20 18 2 38 38 H 1.09008 * 109.47389 * 180.02562 * 20 18 2 39 39 H 1.09004 * 109.47202 * 299.99701 * 20 18 2 40 40 H 1.08994 * 109.47311 * 59.99818 * 21 18 2 41 41 H 1.08999 * 109.46860 * 179.97438 * 21 18 2 42 42 H 1.08999 * 109.47199 * 299.99771 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 3.1341 1.4710 -0.8763 5 6 3.8196 2.6694 -0.8786 6 6 3.4577 3.6795 -0.0082 7 6 4.2145 4.9827 -0.0137 8 8 5.0646 5.0446 1.1334 9 14 5.2481 5.0942 -1.5595 10 1 4.3646 5.0299 -2.7514 11 1 5.9943 6.3781 -1.5645 12 1 6.2098 3.9632 -1.5946 13 6 2.3935 3.4994 0.8690 14 16 1.9318 4.7937 1.9719 15 6 0.5311 4.0790 2.8761 16 6 0.0061 5.0970 3.8905 17 6 1.6955 2.3008 0.8751 18 14 2.2595 -1.6178 -0.0007 19 6 4.0907 -1.2778 0.0457 20 6 1.7749 -2.6152 1.4962 21 6 1.8444 -2.5738 -1.5449 22 1 -0.5401 -0.9352 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 3.4229 0.6824 -1.5554 25 1 4.6440 2.8164 -1.5607 26 1 3.5086 5.8129 0.0121 27 1 5.7196 4.3344 1.1762 28 1 -0.2626 3.8239 2.1739 29 1 0.8568 3.1796 3.3987 30 1 -0.8359 4.6677 4.4336 31 1 0.7996 5.3525 4.5928 32 1 -0.3198 5.9961 3.3677 33 1 0.8690 2.1584 1.5556 34 1 4.3175 -0.6239 0.8878 35 1 4.6318 -2.2171 0.1590 36 1 4.3938 -0.7933 -0.8824 37 1 0.7036 -2.8142 1.4691 38 1 2.3202 -3.5591 1.4961 39 1 2.0179 -2.0559 2.3997 40 1 2.1278 -1.9902 -2.4207 41 1 2.3897 -3.5176 -1.5455 42 1 0.7730 -2.7727 -1.5721 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_11652928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:11:28 Heat of formation + Delta-G solvation = -41.503444 kcal Electronic energy + Delta-G solvation = -19823.156802 eV Core-core repulsion = 17017.755893 eV Total energy + Delta-G solvation = -2805.400908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 296.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53083 -37.72200 -34.96562 -33.93363 -32.20491 -31.25216 -29.59453 -28.47779 -28.43439 -26.64703 -24.70370 -23.98129 -22.82789 -20.61997 -18.48739 -17.65444 -17.28628 -16.52068 -16.25026 -15.88610 -15.66929 -15.62950 -15.32511 -14.86439 -14.56930 -14.25838 -14.10947 -13.95261 -13.72438 -13.62115 -13.39914 -13.37482 -13.25271 -13.18407 -13.00685 -12.80049 -12.49621 -12.28875 -12.14284 -12.09079 -11.68620 -11.43691 -11.17551 -10.93412 -10.84167 -10.57869 -10.40718 -10.31000 -9.40244 -8.25606 0.00527 0.29121 0.59220 1.07472 1.17627 1.42443 1.52766 1.55087 1.67179 1.81002 1.93471 2.03851 2.48273 2.75717 3.53930 3.71445 3.81747 3.86881 3.89856 3.92522 4.26148 4.30770 4.42217 4.60221 4.62174 4.64836 4.68509 4.69355 4.69577 4.70553 4.72040 4.75149 4.77068 4.77401 4.89371 5.08636 5.10831 5.32191 5.34330 5.40294 5.45574 5.48069 5.54097 5.69719 5.93143 6.63482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.374 4.374 3 C -0.008 4.008 4 C -0.119 4.119 5 C -0.106 4.106 6 C -0.111 4.111 7 C -0.081 4.081 8 O -0.528 6.528 9 Si 0.950 3.050 10 H -0.249 1.249 11 H -0.252 1.252 12 H -0.251 1.251 13 C -0.056 4.056 14 S -0.086 6.086 15 C -0.124 4.124 16 C -0.137 4.137 17 C -0.133 4.133 18 Si 1.049 2.951 19 C -0.448 4.448 20 C -0.448 4.448 21 C -0.448 4.448 22 H 0.105 0.895 23 H 0.093 0.907 24 H 0.132 0.868 25 H 0.128 0.872 26 H 0.117 0.883 27 H 0.373 0.627 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -2.894 -0.301 3.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.415 4.415 3 C -0.010 4.010 4 C -0.139 4.139 5 C -0.125 4.125 6 C -0.118 4.118 7 C -0.192 4.192 8 O -0.333 6.333 9 Si 0.773 3.227 10 H -0.172 1.172 11 H -0.176 1.176 12 H -0.175 1.175 13 C -0.169 4.169 14 S 0.159 5.841 15 C -0.272 4.272 16 C -0.196 4.196 17 C -0.157 4.157 18 Si 1.241 2.759 19 C -0.556 4.556 20 C -0.556 4.556 21 C -0.556 4.556 22 H 0.123 0.877 23 H 0.111 0.889 24 H 0.149 0.851 25 H 0.145 0.855 26 H 0.135 0.865 27 H 0.220 0.780 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.680 -1.060 -0.663 1.423 hybrid contribution -0.723 -1.753 0.077 1.898 sum -1.403 -2.813 -0.586 3.198 Atomic orbital electron populations 1.24258 0.95492 1.01871 0.94601 1.28058 1.01051 1.08139 1.04237 1.18872 0.94699 0.92790 0.94599 1.21232 0.95654 0.97460 0.99561 1.20979 0.99829 0.93406 0.98305 1.19901 0.97283 0.97079 0.97522 1.24972 0.97439 0.96958 0.99855 1.86580 1.48991 1.53553 1.44129 0.85700 0.79728 0.81151 0.76160 1.17213 1.17574 1.17457 1.21569 0.98404 0.97393 0.99582 1.85886 1.37350 1.19803 1.41091 1.23706 0.99233 1.02875 1.01410 1.21504 1.01650 0.98401 0.98041 1.21351 1.00665 0.92352 1.01341 0.78352 0.66496 0.63387 0.67677 1.26230 1.19483 1.05027 1.04814 1.26120 1.05557 1.08994 1.14893 1.26127 1.05338 1.08650 1.15443 0.87670 0.88868 0.85059 0.85484 0.86508 0.78006 0.89679 0.89469 0.90707 0.91373 0.91492 0.85730 0.90983 0.91103 0.90940 0.91230 0.90899 0.91105 0.91058 0.90914 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.13 13.31 28.82 0.38 0.51 16 2 C -0.37 0.23 4.41 -37.57 -0.17 0.07 16 3 C -0.01 -0.01 5.24 -105.04 -0.55 -0.56 16 4 C -0.12 -0.08 8.21 -39.15 -0.32 -0.40 16 5 C -0.11 -0.11 8.64 -39.67 -0.34 -0.45 16 6 C -0.11 -0.21 5.29 -104.33 -0.55 -0.77 16 7 C -0.08 -0.10 2.04 36.01 0.07 -0.03 16 8 O -0.53 -0.87 12.74 -35.23 -0.45 -1.32 16 9 Si 0.95 0.27 25.47 -169.99 -4.33 -4.06 16 10 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 11 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 12 H -0.25 0.06 6.74 56.52 0.38 0.44 16 13 C -0.06 -0.14 6.10 -39.09 -0.24 -0.38 16 14 S -0.09 -0.20 20.33 -107.50 -2.19 -2.38 16 15 C -0.12 0.00 5.05 37.16 0.19 0.19 16 16 C -0.14 0.12 9.92 37.16 0.37 0.49 16 17 C -0.13 -0.23 8.64 -38.97 -0.34 -0.57 16 18 Si 1.05 -2.55 11.67 -169.99 -1.98 -4.53 16 19 C -0.45 0.68 7.69 101.05 0.78 1.45 16 20 C -0.45 0.72 8.65 101.05 0.87 1.59 16 21 C -0.45 0.84 8.65 101.05 0.87 1.72 16 22 H 0.11 -0.29 7.72 -52.49 -0.41 -0.70 16 23 H 0.09 -0.07 7.84 -52.49 -0.41 -0.48 16 24 H 0.13 -0.18 5.91 -52.49 -0.31 -0.49 16 25 H 0.13 -0.07 4.86 -52.49 -0.25 -0.33 16 26 H 0.12 0.18 7.30 -51.93 -0.38 -0.20 16 27 H 0.37 -0.61 8.70 45.56 0.40 -0.21 16 28 H 0.08 -0.05 7.74 -51.92 -0.40 -0.45 16 29 H 0.09 -0.03 7.75 -51.93 -0.40 -0.44 16 30 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 31 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 32 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 33 H 0.12 0.08 5.75 -52.48 -0.30 -0.22 16 34 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.13 6.23 -51.93 -0.32 -0.46 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 38 H 0.07 -0.13 7.96 -51.92 -0.41 -0.54 16 39 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 40 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 41 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 42 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 LS Contribution 350.95 15.07 5.29 5.29 Total: 0.00 -4.40 350.95 -8.82 -13.22 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: -6.19 Total: -9.09 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 1.03 Total: 2.88 kcal Atomic # 8 Polarization: -0.87 SS G_CDS: -0.45 Total: -1.32 kcal Atomic # 14 Polarization: -2.28 SS G_CDS: -6.31 Total: -8.60 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -2.19 Total: -2.38 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -4.40 -8.82 -13.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.285 kcal (2) G-P(sol) polarization free energy of solvation -4.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds