Wall clock time and date at job start Mon Mar 8 2021 07:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32563 * 1 3 3 C 1.47819 * 120.00161 * 2 1 4 4 C 1.39559 * 120.10175 * 226.53120 * 3 2 1 5 5 C 1.38066 * 120.01468 * 179.72736 * 4 3 2 6 6 C 1.38165 * 120.22880 * 0.50477 * 5 4 3 7 7 C 1.50700 * 119.89485 * 179.76991 * 6 5 4 8 8 O 1.42902 * 109.46790 * 254.72045 * 7 6 5 9 9 Si 1.86296 * 109.47452 * 14.72461 * 7 6 5 10 10 H 1.48500 * 109.46835 * 60.00071 * 9 7 6 11 11 H 1.48498 * 109.46916 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46874 * 300.00112 * 9 7 6 13 13 C 1.39087 * 120.20480 * 359.49138 * 6 5 4 14 14 S 1.76204 * 120.00922 * 180.27296 * 13 6 5 15 15 C 1.81397 * 102.99689 * 180.02562 * 14 13 6 16 16 C 1.53000 * 109.46844 * 180.02562 * 15 14 13 17 17 C 1.38704 * 119.97832 * 0.25629 * 13 6 5 18 18 Si 1.86798 * 119.99598 * 180.02562 * 2 1 3 19 19 C 1.86303 * 109.47078 * 181.51102 * 18 2 1 20 20 C 1.86295 * 109.47225 * 301.51019 * 18 2 1 21 21 C 1.86299 * 109.47160 * 61.51053 * 18 2 1 22 22 H 1.07995 * 120.00593 * 180.02562 * 1 2 3 23 23 H 1.08000 * 119.99755 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.99422 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.88463 * 180.27527 * 5 4 3 26 26 H 1.09001 * 109.47186 * 134.72693 * 7 6 5 27 27 H 0.96707 * 113.99940 * 60.00537 * 8 7 6 28 28 H 1.09000 * 109.47406 * 299.99950 * 15 14 13 29 29 H 1.08997 * 109.47335 * 60.00231 * 15 14 13 30 30 H 1.09004 * 109.47110 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.47269 * 299.99715 * 16 15 14 32 32 H 1.08997 * 109.47696 * 60.00107 * 16 15 14 33 33 H 1.08007 * 120.11511 * 179.97438 * 17 13 6 34 34 H 1.09000 * 109.46910 * 53.64882 * 19 18 2 35 35 H 1.08991 * 109.47119 * 173.65244 * 19 18 2 36 36 H 1.08998 * 109.46736 * 293.65292 * 19 18 2 37 37 H 1.08999 * 109.47191 * 60.00194 * 20 18 2 38 38 H 1.09008 * 109.47389 * 180.02562 * 20 18 2 39 39 H 1.09004 * 109.47202 * 299.99701 * 20 18 2 40 40 H 1.08994 * 109.47311 * 59.99818 * 21 18 2 41 41 H 1.08999 * 109.46860 * 179.97438 * 21 18 2 42 42 H 1.08999 * 109.47199 * 299.99771 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 3.1341 1.4710 -0.8763 5 6 3.8196 2.6694 -0.8786 6 6 3.4577 3.6795 -0.0082 7 6 4.2145 4.9827 -0.0137 8 8 5.0646 5.0446 1.1334 9 14 5.2481 5.0942 -1.5595 10 1 4.3646 5.0299 -2.7514 11 1 5.9943 6.3781 -1.5645 12 1 6.2098 3.9632 -1.5946 13 6 2.3935 3.4994 0.8690 14 16 1.9318 4.7937 1.9719 15 6 0.5311 4.0790 2.8761 16 6 0.0061 5.0970 3.8905 17 6 1.6955 2.3008 0.8751 18 14 2.2595 -1.6178 -0.0007 19 6 4.0907 -1.2778 0.0457 20 6 1.7749 -2.6152 1.4962 21 6 1.8444 -2.5738 -1.5449 22 1 -0.5401 -0.9352 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 3.4229 0.6824 -1.5554 25 1 4.6440 2.8164 -1.5607 26 1 3.5086 5.8129 0.0121 27 1 5.7196 4.3344 1.1762 28 1 -0.2626 3.8239 2.1739 29 1 0.8568 3.1796 3.3987 30 1 -0.8359 4.6677 4.4336 31 1 0.7996 5.3525 4.5928 32 1 -0.3198 5.9961 3.3677 33 1 0.8690 2.1584 1.5556 34 1 4.3175 -0.6239 0.8878 35 1 4.6318 -2.2171 0.1590 36 1 4.3938 -0.7933 -0.8824 37 1 0.7036 -2.8142 1.4691 38 1 2.3202 -3.5591 1.4961 39 1 2.0179 -2.0559 2.3997 40 1 2.1278 -1.9902 -2.4207 41 1 2.3897 -3.5176 -1.5455 42 1 0.7730 -2.7727 -1.5721 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_11652928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:11:27 Heat of formation + Delta-G solvation = -31.071894 kcal Electronic energy + Delta-G solvation = -19822.704456 eV Core-core repulsion = 17017.755893 eV Total energy + Delta-G solvation = -2804.948563 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 296.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.57777 -37.78945 -34.95033 -33.92091 -32.25115 -31.25163 -29.43052 -28.30993 -28.28122 -26.67624 -24.70165 -24.03583 -22.84649 -20.59932 -18.54845 -17.69933 -17.34360 -16.58195 -16.28757 -15.90421 -15.71128 -15.58995 -15.32232 -14.91321 -14.54862 -14.12054 -14.02210 -13.79800 -13.71513 -13.53681 -13.35114 -13.20603 -13.17221 -13.06086 -12.89984 -12.76914 -12.47555 -12.32968 -12.19369 -12.14296 -11.70162 -11.37779 -11.17050 -10.82046 -10.77224 -10.60144 -10.40107 -10.32817 -9.42346 -8.39736 -0.03177 0.21607 0.51337 1.12724 1.15513 1.39621 1.46800 1.50715 1.82224 1.87896 1.99699 2.20427 2.59538 2.75732 3.51375 3.68719 3.82030 3.88378 3.90133 3.93562 4.26413 4.28680 4.42470 4.53542 4.67644 4.73503 4.77188 4.80570 4.81128 4.82240 4.85442 4.86940 4.88273 4.88846 4.94883 5.09251 5.14250 5.28081 5.33998 5.46222 5.57154 5.65832 5.68793 5.73502 5.93659 6.70364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.389 4.389 3 C -0.014 4.014 4 C -0.124 4.124 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.085 4.085 8 O -0.544 6.544 9 Si 0.987 3.013 10 H -0.257 1.257 11 H -0.273 1.273 12 H -0.237 1.237 13 C -0.069 4.069 14 S -0.127 6.127 15 C -0.114 4.114 16 C -0.136 4.136 17 C -0.144 4.144 18 Si 1.108 2.892 19 C -0.461 4.461 20 C -0.461 4.461 21 C -0.457 4.457 22 H 0.124 0.876 23 H 0.086 0.914 24 H 0.152 0.848 25 H 0.143 0.857 26 H 0.106 0.894 27 H 0.386 0.614 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 -4.195 -0.774 4.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.428 4.428 3 C -0.016 4.016 4 C -0.144 4.144 5 C -0.131 4.131 6 C -0.130 4.130 7 C -0.195 4.195 8 O -0.350 6.350 9 Si 0.809 3.191 10 H -0.181 1.181 11 H -0.198 1.198 12 H -0.160 1.160 13 C -0.182 4.182 14 S 0.117 5.883 15 C -0.262 4.262 16 C -0.194 4.194 17 C -0.168 4.168 18 Si 1.296 2.704 19 C -0.568 4.568 20 C -0.568 4.568 21 C -0.565 4.565 22 H 0.142 0.858 23 H 0.104 0.896 24 H 0.170 0.830 25 H 0.160 0.840 26 H 0.124 0.876 27 H 0.234 0.766 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.805 -2.371 -1.123 2.745 hybrid contribution -0.721 -1.350 0.255 1.551 sum -1.526 -3.721 -0.868 4.114 Atomic orbital electron populations 1.24448 0.95518 1.02512 0.93923 1.28434 1.01423 1.08240 1.04708 1.19136 0.94912 0.93237 0.94269 1.21545 0.95345 0.97872 0.99635 1.21202 1.00291 0.93310 0.98277 1.20069 0.97428 0.97611 0.97842 1.25088 0.97569 0.96459 1.00407 1.86539 1.49488 1.54401 1.44609 0.85187 0.78892 0.80358 0.74654 1.18105 1.19825 1.15982 1.21677 0.99078 0.97531 0.99951 1.85942 1.39074 1.21221 1.42016 1.23724 0.98156 1.02996 1.01301 1.21521 1.01957 0.98191 0.97749 1.21513 1.00952 0.92456 1.01890 0.77456 0.64842 0.61554 0.66562 1.26393 1.20733 1.05068 1.04643 1.26279 1.05929 1.09337 1.15272 1.26226 1.05594 1.08918 1.15715 0.85783 0.89586 0.83036 0.83984 0.87581 0.76564 0.89111 0.89113 0.89088 0.91856 0.91775 0.85250 0.91937 0.90771 0.90475 0.90885 0.90680 0.91727 0.90998 0.90655 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.33 13.31 66.67 0.89 1.22 16 2 C -0.39 0.67 4.41 23.66 0.10 0.77 16 3 C -0.01 -0.03 5.24 -20.14 -0.11 -0.13 16 4 C -0.12 -0.12 8.21 22.55 0.19 0.07 16 5 C -0.11 -0.22 8.64 22.21 0.19 -0.03 16 6 C -0.12 -0.59 5.29 -19.68 -0.10 -0.69 16 7 C -0.09 -0.31 2.04 71.24 0.15 -0.17 16 8 O -0.54 -2.45 12.74 -148.98 -1.90 -4.35 16 9 Si 0.99 0.79 25.47 68.60 1.75 2.54 16 10 H -0.26 -0.52 7.11 99.48 0.71 0.19 16 11 H -0.27 -1.12 7.11 99.48 0.71 -0.42 16 12 H -0.24 0.38 6.74 99.48 0.67 1.05 16 13 C -0.07 -0.44 6.10 22.59 0.14 -0.30 16 14 S -0.13 -0.79 20.33 -56.49 -1.15 -1.94 16 15 C -0.11 -0.08 5.05 71.98 0.36 0.28 16 16 C -0.14 0.18 9.92 71.98 0.71 0.89 16 17 C -0.14 -0.62 8.64 22.67 0.20 -0.42 16 18 Si 1.11 -6.33 11.67 68.60 0.80 -5.53 16 19 C -0.46 1.68 7.69 113.37 0.87 2.55 16 20 C -0.46 1.76 8.65 113.37 0.98 2.74 16 21 C -0.46 2.30 8.65 113.37 0.98 3.28 16 22 H 0.12 -0.84 7.72 -2.91 -0.02 -0.86 16 23 H 0.09 -0.12 7.84 -2.91 -0.02 -0.14 16 24 H 0.15 -0.59 5.91 -2.91 -0.02 -0.61 16 25 H 0.14 -0.27 4.86 -2.91 -0.01 -0.28 16 26 H 0.11 0.55 7.30 -2.39 -0.02 0.53 16 27 H 0.39 -0.93 8.70 -74.05 -0.64 -1.57 16 28 H 0.09 -0.05 7.74 -2.39 -0.02 -0.07 16 29 H 0.09 -0.01 7.75 -2.39 -0.02 -0.03 16 30 H 0.09 -0.40 8.14 -2.38 -0.02 -0.42 16 31 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.13 0.28 5.75 -2.91 -0.02 0.26 16 34 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 35 H 0.07 -0.32 7.96 -2.39 -0.02 -0.33 16 36 H 0.08 -0.36 6.23 -2.39 -0.01 -0.38 16 37 H 0.07 -0.33 7.96 -2.39 -0.02 -0.34 16 38 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 39 H 0.06 -0.15 7.96 -2.39 -0.02 -0.17 16 40 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 41 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 42 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 Total: 0.00 -10.64 350.95 6.12 -4.53 By element: Atomic # 1 Polarization: -6.37 SS G_CDS: 1.07 Total: -5.30 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.55 Total: 10.06 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: -1.90 Total: -4.35 kcal Atomic # 14 Polarization: -5.54 SS G_CDS: 2.55 Total: -2.99 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -1.15 Total: -1.94 kcal Total: -10.64 6.12 -4.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.545 kcal (2) G-P(sol) polarization free energy of solvation -10.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds