Wall clock time and date at job start Mon Mar 8 2021 07:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32619 * 1 3 3 C 1.47735 * 119.99894 * 2 1 4 4 C 1.39466 * 120.17053 * 114.48228 * 3 2 1 5 5 C 1.38000 * 119.91036 * 180.25490 * 4 3 2 6 6 C 1.50697 * 119.86845 * 179.79580 * 5 4 3 7 7 O 1.42904 * 109.47059 * 299.71790 * 6 5 4 8 8 Si 1.86304 * 109.46685 * 179.72189 * 6 5 4 9 9 H 1.48504 * 109.47144 * 60.00089 * 8 6 5 10 10 H 1.48500 * 109.46847 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47290 * 299.99764 * 8 6 5 12 12 C 1.38369 * 120.25868 * 359.51193 * 5 4 3 13 13 C 1.38248 * 120.34704 * 0.23911 * 12 5 4 14 14 C 1.38511 * 120.08376 * 359.97438 * 13 12 5 15 15 O 1.35828 * 120.13081 * 180.02562 * 14 13 12 16 16 C 1.42897 * 116.99750 * 359.97438 * 15 14 13 17 17 F 1.39898 * 109.47617 * 300.00064 * 16 15 14 18 18 F 1.39900 * 109.47369 * 60.00332 * 16 15 14 19 19 Si 1.86804 * 119.99931 * 179.97438 * 2 1 3 20 20 C 1.86294 * 109.47083 * 240.00695 * 19 2 1 21 21 C 1.86300 * 109.47179 * 0.02562 * 19 2 1 22 22 C 1.86300 * 109.46956 * 120.00543 * 19 2 1 23 23 H 1.08000 * 119.99817 * 185.02371 * 1 2 3 24 24 H 1.08000 * 120.00098 * 5.03709 * 1 2 3 25 25 H 1.08003 * 120.04638 * 0.04524 * 4 3 2 26 26 H 1.09001 * 109.47760 * 59.72167 * 6 5 4 27 27 H 0.96703 * 113.99759 * 300.00636 * 7 6 5 28 28 H 1.07998 * 119.82864 * 180.25558 * 12 5 4 29 29 H 1.07995 * 119.96103 * 180.02562 * 13 12 5 30 30 H 1.09009 * 109.46960 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.47743 * 60.00116 * 20 19 2 32 32 H 1.08996 * 109.47328 * 180.02562 * 20 19 2 33 33 H 1.09006 * 109.47002 * 299.99928 * 20 19 2 34 34 H 1.09006 * 109.47170 * 59.99602 * 21 19 2 35 35 H 1.08996 * 109.47096 * 179.97438 * 21 19 2 36 36 H 1.09001 * 109.47349 * 300.00170 * 21 19 2 37 37 H 1.09004 * 109.46805 * 59.99672 * 22 19 2 38 38 H 1.09001 * 109.46921 * 180.02562 * 22 19 2 39 39 H 1.09006 * 109.46843 * 300.00061 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3262 0.0000 0.0000 3 6 2.0648 1.2794 0.0000 4 6 2.8480 1.6366 1.0973 5 6 3.5315 2.8355 1.0938 6 6 4.3738 3.2226 2.2819 7 8 3.5479 3.3032 3.4454 8 14 5.1671 4.8787 1.9675 9 1 4.1111 5.9010 1.7551 10 1 5.9966 5.2605 3.1385 11 1 6.0253 4.7950 0.7585 12 6 3.4512 3.6807 0.0013 13 6 2.6822 3.3349 -1.0943 14 6 1.9867 2.1371 -1.1042 15 8 1.2312 1.7962 -2.1803 16 6 1.1982 2.7212 -3.2689 17 9 0.6887 3.9461 -2.8249 18 9 2.4939 2.9066 -3.7629 19 14 2.2602 -1.6178 0.0007 20 6 3.3311 -1.7159 1.5220 21 6 1.0496 -3.0338 0.0006 22 6 3.3314 -1.7170 -1.5203 23 1 -0.5400 -0.9317 0.0819 24 1 -0.5400 0.9317 -0.0821 25 1 2.9168 0.9775 1.9501 26 1 5.1489 2.4722 2.4379 27 1 2.8348 3.9528 3.3772 28 1 3.9923 4.6153 0.0042 29 1 2.6242 3.9991 -1.9439 30 1 0.5600 2.3281 -4.0604 31 1 2.7044 -1.6578 2.4119 32 1 3.8764 -2.6596 1.5222 33 1 4.0394 -0.8874 1.5217 34 1 0.4232 -2.9762 -0.8897 35 1 1.5945 -3.9777 0.0005 36 1 0.4225 -2.9759 0.8903 37 1 4.0396 -0.8885 -1.5205 38 1 3.8760 -2.6612 -1.5201 39 1 2.7047 -1.6596 -2.4104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_11652986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:14:06 Heat of formation + Delta-G solvation = -178.620699 kcal Electronic energy + Delta-G solvation = -23471.016511 eV Core-core repulsion = 19752.228741 eV Total energy + Delta-G solvation = -3718.787770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.106 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.39395 -48.37995 -41.23302 -39.11606 -37.29022 -35.00338 -31.89218 -30.86740 -29.51424 -28.39884 -28.33165 -27.73935 -25.86511 -24.33084 -22.87609 -20.71765 -19.80448 -19.07919 -18.94483 -18.14504 -17.28701 -16.88359 -16.25934 -15.92032 -15.76399 -15.47995 -15.28141 -15.05022 -14.84323 -14.69702 -14.49599 -14.18196 -14.05627 -13.96190 -13.93548 -13.77408 -13.40579 -13.22203 -13.17356 -13.07559 -13.02946 -12.80992 -12.38009 -12.24936 -12.04620 -11.63312 -11.35831 -10.96928 -10.87934 -10.42404 -10.19885 -9.70458 -9.20393 0.11666 0.25302 1.07008 1.15035 1.42731 1.49447 1.50998 1.75515 1.88149 1.90636 2.12734 2.42834 2.52420 2.70890 3.23678 3.45054 3.57739 3.65159 3.71355 3.88297 4.09645 4.23889 4.51202 4.60250 4.68279 4.70714 4.76233 4.77263 4.78193 4.80547 4.80916 4.92524 5.09320 5.10543 5.32528 5.45195 5.50214 5.56156 5.57427 5.59657 5.76750 6.06180 6.54308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.368 4.368 3 C -0.045 4.045 4 C -0.059 4.059 5 C -0.140 4.140 6 C -0.076 4.076 7 O -0.538 6.538 8 Si 0.945 3.055 9 H -0.251 1.251 10 H -0.253 1.253 11 H -0.250 1.250 12 C -0.095 4.095 13 C -0.182 4.182 14 C 0.111 3.889 15 O -0.311 6.311 16 C 0.409 3.591 17 F -0.199 7.199 18 F -0.198 7.198 19 Si 1.050 2.950 20 C -0.449 4.449 21 C -0.449 4.449 22 C -0.446 4.446 23 H 0.107 0.893 24 H 0.091 0.909 25 H 0.143 0.857 26 H 0.120 0.880 27 H 0.376 0.624 28 H 0.124 0.876 29 H 0.136 0.864 30 H 0.182 0.818 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 -1.365 -1.140 2.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.409 4.409 3 C -0.046 4.046 4 C -0.077 4.077 5 C -0.141 4.141 6 C -0.187 4.187 7 O -0.343 6.343 8 Si 0.768 3.232 9 H -0.175 1.175 10 H -0.177 1.177 11 H -0.174 1.174 12 C -0.113 4.113 13 C -0.201 4.201 14 C 0.067 3.933 15 O -0.228 6.228 16 C 0.318 3.682 17 F -0.181 7.181 18 F -0.180 7.180 19 Si 1.242 2.758 20 C -0.557 4.557 21 C -0.557 4.557 22 C -0.553 4.553 23 H 0.125 0.875 24 H 0.110 0.890 25 H 0.160 0.840 26 H 0.137 0.863 27 H 0.224 0.776 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.199 0.801 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.533 -1.080 -1.119 1.644 hybrid contribution -0.547 0.590 -0.475 0.934 sum -1.080 -0.490 -1.594 1.987 Atomic orbital electron populations 1.24260 0.95391 1.01827 0.93880 1.27755 1.00860 1.07271 1.05036 1.18351 1.00047 0.94319 0.91870 1.20991 0.94164 0.95707 0.96791 1.20205 1.01358 0.95995 0.96521 1.24918 0.96587 1.11946 0.85251 1.86515 1.46758 1.64518 1.36489 0.85749 0.80550 0.76071 0.80825 1.17501 1.17666 1.17375 1.20829 0.98310 0.99100 0.93037 1.21404 1.00895 0.96731 1.01033 1.18947 0.93168 0.93935 0.87212 1.86651 1.65693 1.45218 1.25229 1.23441 0.80562 0.76774 0.87384 1.93107 1.86930 1.47517 1.90500 1.93109 1.41952 1.95182 1.87723 0.78349 0.66299 0.63325 0.67847 1.26154 1.09785 1.04661 1.15083 1.26141 1.11335 1.13660 1.04555 1.26070 1.09723 1.04352 1.15199 0.87506 0.89028 0.83953 0.86254 0.77643 0.85812 0.84672 0.80130 0.90979 0.91023 0.90974 0.91088 0.90849 0.91024 0.91280 0.91131 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.03 13.30 28.83 0.38 0.41 16 2 C -0.37 -0.05 3.83 -37.60 -0.14 -0.19 16 3 C -0.05 -0.07 4.91 -104.89 -0.52 -0.59 16 4 C -0.06 -0.06 8.76 -39.21 -0.34 -0.41 16 5 C -0.14 -0.13 5.38 -104.66 -0.56 -0.70 16 6 C -0.08 0.02 2.82 36.00 0.10 0.12 16 7 O -0.54 -0.19 12.77 -35.23 -0.45 -0.64 16 8 Si 0.95 -0.17 25.06 -169.99 -4.26 -4.42 16 9 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 10 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 11 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 12 C -0.09 -0.14 8.66 -39.53 -0.34 -0.48 16 13 C -0.18 -0.41 8.25 -39.48 -0.33 -0.73 16 14 C 0.11 0.26 6.45 -38.81 -0.25 0.00 16 15 O -0.31 -0.38 9.63 -19.20 -0.18 -0.56 16 16 C 0.41 -0.36 5.97 101.05 0.60 0.24 16 17 F -0.20 -0.17 15.59 2.25 0.04 -0.13 16 18 F -0.20 -0.17 15.58 2.25 0.04 -0.14 16 19 Si 1.05 -1.81 12.33 -169.99 -2.10 -3.91 16 20 C -0.45 0.54 8.19 101.05 0.83 1.37 16 21 C -0.45 0.73 7.88 101.05 0.80 1.53 16 22 C -0.45 0.18 8.65 101.05 0.87 1.06 16 23 H 0.11 -0.21 7.07 -52.49 -0.37 -0.58 16 24 H 0.09 0.05 8.05 -52.49 -0.42 -0.38 16 25 H 0.14 0.00 7.05 -52.48 -0.37 -0.37 16 26 H 0.12 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.38 -0.98 8.70 45.56 0.40 -0.58 16 28 H 0.12 0.03 4.85 -52.49 -0.25 -0.23 16 29 H 0.14 0.25 5.09 -52.49 -0.27 -0.02 16 30 H 0.18 -0.99 8.14 -51.92 -0.42 -1.41 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 33 H 0.07 -0.07 7.23 -51.93 -0.38 -0.45 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 37 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 38 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 39 H 0.07 -0.01 7.96 -51.93 -0.41 -0.43 16 LS Contribution 333.19 15.07 5.02 5.02 Total: 0.00 -5.46 333.19 -5.40 -10.86 By element: Atomic # 1 Polarization: -3.11 SS G_CDS: -4.60 Total: -7.71 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 1.10 Total: 1.63 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: -0.63 Total: -1.20 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.07 Total: -0.27 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: -6.36 Total: -8.33 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -5.46 -5.40 -10.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.760 kcal (2) G-P(sol) polarization free energy of solvation -5.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds