Wall clock time and date at job start Mon Mar 8 2021 07:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32619 * 1 3 3 C 1.47735 * 119.99894 * 2 1 4 4 C 1.39466 * 120.17053 * 114.48228 * 3 2 1 5 5 C 1.38000 * 119.91036 * 180.25490 * 4 3 2 6 6 C 1.50697 * 119.86845 * 179.79580 * 5 4 3 7 7 O 1.42904 * 109.47059 * 299.71790 * 6 5 4 8 8 Si 1.86304 * 109.46685 * 179.72189 * 6 5 4 9 9 H 1.48504 * 109.47144 * 60.00089 * 8 6 5 10 10 H 1.48500 * 109.46847 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47290 * 299.99764 * 8 6 5 12 12 C 1.38369 * 120.25868 * 359.51193 * 5 4 3 13 13 C 1.38248 * 120.34704 * 0.23911 * 12 5 4 14 14 C 1.38511 * 120.08376 * 359.97438 * 13 12 5 15 15 O 1.35828 * 120.13081 * 180.02562 * 14 13 12 16 16 C 1.42897 * 116.99750 * 359.97438 * 15 14 13 17 17 F 1.39898 * 109.47617 * 300.00064 * 16 15 14 18 18 F 1.39900 * 109.47369 * 60.00332 * 16 15 14 19 19 Si 1.86804 * 119.99931 * 179.97438 * 2 1 3 20 20 C 1.86294 * 109.47083 * 240.00695 * 19 2 1 21 21 C 1.86300 * 109.47179 * 0.02562 * 19 2 1 22 22 C 1.86300 * 109.46956 * 120.00543 * 19 2 1 23 23 H 1.08000 * 119.99817 * 185.02371 * 1 2 3 24 24 H 1.08000 * 120.00098 * 5.03709 * 1 2 3 25 25 H 1.08003 * 120.04638 * 0.04524 * 4 3 2 26 26 H 1.09001 * 109.47760 * 59.72167 * 6 5 4 27 27 H 0.96703 * 113.99759 * 300.00636 * 7 6 5 28 28 H 1.07998 * 119.82864 * 180.25558 * 12 5 4 29 29 H 1.07995 * 119.96103 * 180.02562 * 13 12 5 30 30 H 1.09009 * 109.46960 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.47743 * 60.00116 * 20 19 2 32 32 H 1.08996 * 109.47328 * 180.02562 * 20 19 2 33 33 H 1.09006 * 109.47002 * 299.99928 * 20 19 2 34 34 H 1.09006 * 109.47170 * 59.99602 * 21 19 2 35 35 H 1.08996 * 109.47096 * 179.97438 * 21 19 2 36 36 H 1.09001 * 109.47349 * 300.00170 * 21 19 2 37 37 H 1.09004 * 109.46805 * 59.99672 * 22 19 2 38 38 H 1.09001 * 109.46921 * 180.02562 * 22 19 2 39 39 H 1.09006 * 109.46843 * 300.00061 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3262 0.0000 0.0000 3 6 2.0648 1.2794 0.0000 4 6 2.8480 1.6366 1.0973 5 6 3.5315 2.8355 1.0938 6 6 4.3738 3.2226 2.2819 7 8 3.5479 3.3032 3.4454 8 14 5.1671 4.8787 1.9675 9 1 4.1111 5.9010 1.7551 10 1 5.9966 5.2605 3.1385 11 1 6.0253 4.7950 0.7585 12 6 3.4512 3.6807 0.0013 13 6 2.6822 3.3349 -1.0943 14 6 1.9867 2.1371 -1.1042 15 8 1.2312 1.7962 -2.1803 16 6 1.1982 2.7212 -3.2689 17 9 0.6887 3.9461 -2.8249 18 9 2.4939 2.9066 -3.7629 19 14 2.2602 -1.6178 0.0007 20 6 3.3311 -1.7159 1.5220 21 6 1.0496 -3.0338 0.0006 22 6 3.3314 -1.7170 -1.5203 23 1 -0.5400 -0.9317 0.0819 24 1 -0.5400 0.9317 -0.0821 25 1 2.9168 0.9775 1.9501 26 1 5.1489 2.4722 2.4379 27 1 2.8348 3.9528 3.3772 28 1 3.9923 4.6153 0.0042 29 1 2.6242 3.9991 -1.9439 30 1 0.5600 2.3281 -4.0604 31 1 2.7044 -1.6578 2.4119 32 1 3.8764 -2.6596 1.5222 33 1 4.0394 -0.8874 1.5217 34 1 0.4232 -2.9762 -0.8897 35 1 1.5945 -3.9777 0.0005 36 1 0.4225 -2.9759 0.8903 37 1 4.0396 -0.8885 -1.5205 38 1 3.8760 -2.6612 -1.5201 39 1 2.7047 -1.6596 -2.4104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_11652986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:14:06 Heat of formation + Delta-G solvation = -171.255645 kcal Electronic energy + Delta-G solvation = -23470.697138 eV Core-core repulsion = 19752.228741 eV Total energy + Delta-G solvation = -3718.468397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.106 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.38503 -48.38560 -41.28154 -39.14127 -37.30089 -35.00763 -31.95217 -30.87738 -29.40617 -28.31967 -28.19729 -27.70451 -25.86821 -24.37113 -22.91428 -20.72132 -19.82339 -19.05336 -18.93971 -18.14079 -17.32741 -16.89484 -16.26937 -15.92492 -15.80343 -15.50367 -15.31582 -15.07896 -14.87169 -14.71795 -14.47234 -14.12026 -14.02544 -13.94325 -13.84429 -13.70471 -13.36294 -13.11852 -13.10268 -12.99117 -12.93995 -12.83938 -12.39460 -12.28189 -12.09112 -11.67088 -11.31176 -10.91844 -10.75933 -10.43259 -10.16804 -9.76828 -9.26342 0.04389 0.16002 1.10913 1.15541 1.41428 1.48197 1.56377 1.84731 1.87520 2.04029 2.22814 2.50119 2.52391 2.74027 3.41512 3.51239 3.62401 3.63027 3.67861 3.82593 4.08605 4.17744 4.47404 4.61020 4.75844 4.80358 4.82658 4.84027 4.88865 4.91065 4.91411 4.96290 5.03109 5.03856 5.28241 5.48357 5.51814 5.57172 5.66728 5.70320 5.79341 6.01848 6.67918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.383 4.383 3 C -0.053 4.053 4 C -0.064 4.064 5 C -0.140 4.140 6 C -0.072 4.072 7 O -0.549 6.549 8 Si 0.973 3.027 9 H -0.256 1.256 10 H -0.270 1.270 11 H -0.259 1.259 12 C -0.106 4.106 13 C -0.196 4.196 14 C 0.095 3.905 15 O -0.317 6.317 16 C 0.402 3.598 17 F -0.211 7.211 18 F -0.210 7.210 19 Si 1.103 2.897 20 C -0.460 4.460 21 C -0.454 4.454 22 C -0.461 4.461 23 H 0.126 0.874 24 H 0.080 0.920 25 H 0.153 0.847 26 H 0.131 0.869 27 H 0.388 0.612 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.229 0.771 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 -2.241 -0.949 2.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.422 4.422 3 C -0.054 4.054 4 C -0.082 4.082 5 C -0.141 4.141 6 C -0.183 4.183 7 O -0.356 6.356 8 Si 0.798 3.202 9 H -0.180 1.180 10 H -0.195 1.195 11 H -0.183 1.183 12 C -0.123 4.123 13 C -0.214 4.214 14 C 0.052 3.948 15 O -0.235 6.235 16 C 0.312 3.688 17 F -0.193 7.193 18 F -0.192 7.192 19 Si 1.291 2.709 20 C -0.567 4.567 21 C -0.563 4.563 22 C -0.567 4.567 23 H 0.144 0.856 24 H 0.098 0.902 25 H 0.170 0.830 26 H 0.148 0.852 27 H 0.237 0.763 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.245 0.755 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.987 -1.934 -0.942 2.367 hybrid contribution -0.410 0.896 -0.554 1.131 sum -1.397 -1.037 -1.496 2.294 Atomic orbital electron populations 1.24384 0.95343 1.02203 0.93534 1.28156 1.01222 1.07534 1.05298 1.18630 1.00119 0.94860 0.91784 1.21173 0.94061 0.95921 0.97018 1.20341 1.01260 0.95848 0.96650 1.24923 0.96503 1.12144 0.84704 1.86484 1.47316 1.65159 1.36626 0.85350 0.79614 0.75816 0.79389 1.18045 1.19503 1.18329 1.20990 0.98516 0.99660 0.93183 1.21508 1.01519 0.97054 1.01363 1.19149 0.93588 0.94164 0.87930 1.86635 1.65506 1.45927 1.25399 1.24256 0.80587 0.76240 0.87682 1.93077 1.86983 1.48468 1.90740 1.93079 1.43145 1.95238 1.87750 0.77562 0.65116 0.61972 0.66276 1.26264 1.10034 1.04745 1.15622 1.26184 1.11483 1.13647 1.04953 1.26275 1.09998 1.04113 1.16304 0.85623 0.90192 0.82970 0.85160 0.76309 0.85056 0.84912 0.75486 0.90664 0.90666 0.91287 0.90864 0.90549 0.90477 0.92406 0.90684 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.07 13.30 66.66 0.89 0.96 16 2 C -0.38 -0.11 3.83 23.62 0.09 -0.02 16 3 C -0.05 -0.20 4.91 -20.04 -0.10 -0.30 16 4 C -0.06 -0.16 8.76 22.51 0.20 0.03 16 5 C -0.14 -0.33 5.38 -19.89 -0.11 -0.44 16 6 C -0.07 0.03 2.82 71.23 0.20 0.23 16 7 O -0.55 -0.28 12.77 -148.98 -1.90 -2.18 16 8 Si 0.97 0.09 25.06 68.60 1.72 1.81 16 9 H -0.26 -0.19 7.11 99.48 0.71 0.52 16 10 H -0.27 -0.79 7.11 99.48 0.71 -0.08 16 11 H -0.26 -0.37 7.11 99.48 0.71 0.33 16 12 C -0.11 -0.42 8.66 22.30 0.19 -0.23 16 13 C -0.20 -1.14 8.25 22.34 0.18 -0.96 16 14 C 0.10 0.54 6.45 22.77 0.15 0.68 16 15 O -0.32 -0.97 9.63 -91.62 -0.88 -1.85 16 16 C 0.40 -0.60 5.97 113.37 0.68 0.08 16 17 F -0.21 -0.52 15.59 44.97 0.70 0.18 16 18 F -0.21 -0.54 15.58 44.97 0.70 0.16 16 19 Si 1.10 -4.25 12.33 68.60 0.85 -3.40 16 20 C -0.46 1.35 8.19 113.37 0.93 2.28 16 21 C -0.45 2.01 7.88 113.37 0.89 2.91 16 22 C -0.46 0.24 8.65 113.37 0.98 1.22 16 23 H 0.13 -0.61 7.07 -2.91 -0.02 -0.63 16 24 H 0.08 0.13 8.05 -2.91 -0.02 0.10 16 25 H 0.15 -0.01 7.05 -2.91 -0.02 -0.03 16 26 H 0.13 -0.36 7.96 -2.39 -0.02 -0.38 16 27 H 0.39 -2.02 8.70 -74.06 -0.64 -2.67 16 28 H 0.13 0.19 4.85 -2.91 -0.01 0.17 16 29 H 0.13 0.72 5.09 -2.91 -0.01 0.70 16 30 H 0.23 -2.72 8.14 -2.38 -0.02 -2.74 16 31 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 32 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 33 H 0.07 -0.15 7.23 -2.38 -0.02 -0.17 16 34 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 35 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 37 H 0.06 0.10 7.96 -2.38 -0.02 0.08 16 38 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 39 H 0.07 0.00 7.96 -2.38 -0.02 -0.02 16 Total: 0.00 -13.02 333.19 7.53 -5.49 By element: Atomic # 1 Polarization: -7.81 SS G_CDS: 1.18 Total: -6.64 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.17 Total: 6.43 kcal Atomic # 8 Polarization: -1.25 SS G_CDS: -2.78 Total: -4.03 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 1.40 Total: 0.34 kcal Atomic # 14 Polarization: -4.16 SS G_CDS: 2.56 Total: -1.59 kcal Total: -13.02 7.53 -5.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11652986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.762 kcal (2) G-P(sol) polarization free energy of solvation -13.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds