Wall clock time and date at job start Mon Mar 8 2021 07:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32672 * 1 3 3 C 1.47681 * 120.00168 * 2 1 4 4 C 1.39700 * 119.99744 * 46.28934 * 3 2 1 5 5 C 1.37612 * 119.99759 * 179.72159 * 4 3 2 6 6 C 1.39701 * 120.00212 * 0.57952 * 5 4 3 7 7 C 1.47738 * 120.00465 * 179.67658 * 6 5 4 8 8 N 1.30282 * 125.47663 * 180.02562 * 7 6 5 9 9 C 1.31272 * 117.03477 * 180.02562 * 8 7 6 10 10 C 1.33754 * 115.85421 * 0.02562 * 9 8 7 11 11 C 1.50701 * 125.89339 * 179.97438 * 10 9 8 12 12 O 1.42902 * 109.46988 * 300.00223 * 11 10 9 13 13 Si 1.86296 * 109.47421 * 180.02562 * 11 10 9 14 14 H 1.48501 * 109.46960 * 59.99654 * 13 11 10 15 15 H 1.48497 * 109.47128 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46998 * 299.99805 * 13 11 10 17 17 S 1.76178 * 125.46970 * 359.73713 * 7 6 5 18 18 C 1.39701 * 119.99938 * 359.69244 * 6 5 4 19 19 C 1.37620 * 119.99521 * 0.02562 * 18 6 5 20 20 Si 1.86806 * 120.00125 * 180.02562 * 2 1 3 21 21 C 1.86295 * 109.47060 * 89.24362 * 20 2 1 22 22 C 1.86298 * 109.47014 * 209.24282 * 20 2 1 23 23 C 1.86299 * 109.46798 * 329.24101 * 20 2 1 24 24 H 1.07997 * 119.99742 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99681 * 179.72572 * 1 2 3 26 26 H 1.08001 * 119.99661 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.00269 * 180.26958 * 5 4 3 28 28 H 1.08007 * 122.07673 * 179.97438 * 9 8 7 29 29 H 1.08999 * 109.47105 * 59.99420 * 11 10 9 30 30 H 0.96702 * 114.00065 * 299.99835 * 12 11 10 31 31 H 1.07994 * 120.00347 * 179.97438 * 18 6 5 32 32 H 1.08004 * 119.99939 * 179.97438 * 19 18 6 33 33 H 1.08996 * 109.47406 * 59.99864 * 21 20 2 34 34 H 1.09002 * 109.46705 * 180.02562 * 21 20 2 35 35 H 1.09003 * 109.47272 * 299.99656 * 21 20 2 36 36 H 1.09006 * 109.46768 * 54.54095 * 22 20 2 37 37 H 1.08997 * 109.46865 * 174.53392 * 22 20 2 38 38 H 1.08998 * 109.47615 * 294.54256 * 22 20 2 39 39 H 1.09003 * 109.47277 * 60.00501 * 23 20 2 40 40 H 1.08997 * 109.46970 * 179.97438 * 23 20 2 41 41 H 1.08997 * 109.47407 * 300.00073 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3267 0.0000 0.0000 3 6 2.0652 1.2789 0.0000 4 6 1.6904 2.3018 0.8745 5 6 2.3821 3.4915 0.8786 6 6 3.4514 3.6807 -0.0003 7 6 4.1895 4.9605 -0.0010 8 7 5.1986 5.2510 -0.7722 9 6 5.7330 6.4418 -0.6324 10 6 5.1741 7.2267 0.2953 11 6 5.6047 8.6285 0.6426 12 8 6.9621 8.6130 1.0892 13 14 4.5136 9.2958 1.9971 14 1 4.6301 8.4303 3.1981 15 1 4.9384 10.6769 2.3396 16 1 3.1029 9.3120 1.5335 17 16 3.8418 6.3418 1.0359 18 6 3.8226 2.6599 -0.8788 19 6 3.1345 1.4681 -0.8788 20 14 2.2608 -1.6178 -0.0007 21 6 2.5512 -2.1663 -1.7572 22 6 3.8985 -1.3896 0.8574 23 6 1.2641 -2.9106 0.8970 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0045 26 1 0.8604 2.1574 1.5503 27 1 2.0952 4.2807 1.5577 28 1 6.5725 6.7674 -1.2289 29 1 5.5197 9.2637 -0.2392 30 1 7.1122 8.0661 1.8724 31 1 4.6489 2.8063 -1.5585 32 1 3.4211 0.6790 -1.5582 33 1 3.1343 -1.4099 -2.2825 34 1 3.0958 -3.1105 -1.7576 35 1 1.5930 -2.2999 -2.2593 36 1 3.7328 -0.9764 1.8524 37 1 4.4011 -2.3530 0.9432 38 1 4.5198 -0.7058 0.2790 39 1 0.3059 -3.0442 0.3949 40 1 1.8089 -3.8547 0.8962 41 1 1.0942 -2.5896 1.9247 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_11653090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:16:22 Heat of formation + Delta-G solvation = 6.693804 kcal Electronic energy + Delta-G solvation = -21061.049135 eV Core-core repulsion = 17963.171503 eV Total energy + Delta-G solvation = -3097.877632 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86516 -39.95369 -37.94258 -35.29049 -32.50695 -32.10438 -30.55822 -29.55698 -28.47318 -28.41847 -27.15615 -25.24044 -23.78770 -23.41947 -20.93288 -20.36061 -19.17970 -18.35594 -17.13304 -16.67185 -16.46444 -16.27631 -15.92452 -15.41215 -15.27995 -15.16146 -14.65500 -14.54276 -14.36997 -14.20309 -14.02313 -13.81860 -13.61946 -13.49774 -13.32441 -13.23661 -13.11641 -13.01465 -12.60244 -12.44706 -12.43794 -12.15600 -12.03310 -11.51873 -11.05017 -10.91770 -10.86616 -10.65190 -10.44171 -10.33153 -10.06920 -9.98490 -8.91631 -0.88346 0.11696 0.29421 0.42619 0.51174 1.00647 1.10613 1.30974 1.40116 1.65898 1.80043 1.82423 1.90167 2.10217 2.51751 2.90936 2.95785 3.30596 3.70028 3.79216 3.90215 3.96199 4.07534 4.36556 4.40565 4.50882 4.53677 4.63301 4.66060 4.70914 4.71309 4.72005 4.76763 4.78174 4.81692 5.01605 5.03863 5.20576 5.39976 5.41802 5.43395 5.49169 5.53773 5.55808 5.70994 5.93697 6.36498 6.68072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.378 4.378 3 C -0.009 4.009 4 C -0.118 4.118 5 C -0.089 4.089 6 C -0.044 4.044 7 C 0.134 3.866 8 N -0.468 5.468 9 C 0.076 3.924 10 C -0.259 4.259 11 C -0.032 4.032 12 O -0.531 6.531 13 Si 0.900 3.100 14 H -0.236 1.236 15 H -0.227 1.227 16 H -0.235 1.235 17 S 0.071 5.929 18 C -0.061 4.061 19 C -0.123 4.123 20 Si 1.051 2.949 21 C -0.449 4.449 22 C -0.448 4.448 23 C -0.449 4.449 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.180 0.820 29 H 0.130 0.870 30 H 0.379 0.621 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.066 -1.863 1.311 3.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.419 4.419 3 C -0.010 4.010 4 C -0.136 4.136 5 C -0.110 4.110 6 C -0.048 4.048 7 C -0.140 4.140 8 N -0.181 5.181 9 C -0.076 4.076 10 C -0.380 4.380 11 C -0.146 4.146 12 O -0.337 6.337 13 Si 0.720 3.280 14 H -0.159 1.159 15 H -0.149 1.149 16 H -0.158 1.158 17 S 0.328 5.672 18 C -0.083 4.083 19 C -0.141 4.141 20 Si 1.242 2.758 21 C -0.556 4.556 22 C -0.555 4.555 23 C -0.557 4.557 24 H 0.114 0.886 25 H 0.125 0.875 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.197 0.803 29 H 0.147 0.853 30 H 0.226 0.774 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.086 -1.143 1.889 3.794 hybrid contribution 0.776 -0.011 -0.395 0.871 sum -2.310 -1.154 1.494 2.983 Atomic orbital electron populations 1.24356 0.95434 1.02078 0.94076 1.28048 1.01090 1.08152 1.04594 1.19162 0.94392 0.93128 0.94350 1.21177 1.00108 0.92375 0.99925 1.21080 0.94439 0.97900 0.97573 1.17833 0.96797 0.90298 0.99877 1.25929 0.95893 0.96881 0.95285 1.66615 1.09109 1.18625 1.23730 1.21584 1.00784 0.87854 0.97373 1.26270 1.02850 1.03676 1.05226 1.24260 0.90027 0.92446 1.07855 1.86545 1.24460 1.72398 1.50257 0.86245 0.79575 0.83574 0.78628 1.15859 1.14932 1.15758 1.85002 1.31993 1.09900 1.40315 1.21194 0.98763 0.91617 0.96700 1.21223 0.95685 0.97714 0.99462 0.78342 0.66380 0.63331 0.67748 1.26147 1.05011 1.05938 1.18525 1.26117 1.16624 1.04719 1.08083 1.26144 1.09055 1.12149 1.08366 0.88648 0.87550 0.85248 0.85780 0.80267 0.85286 0.77379 0.84461 0.84952 0.91113 0.90925 0.91099 0.91168 0.91113 0.90983 0.91172 0.90844 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.19 13.30 28.84 0.38 0.58 16 2 C -0.38 0.41 4.41 -37.62 -0.17 0.25 16 3 C -0.01 0.00 5.27 -104.95 -0.55 -0.56 16 4 C -0.12 -0.05 9.30 -39.26 -0.37 -0.42 16 5 C -0.09 -0.09 9.59 -39.26 -0.38 -0.47 16 6 C -0.04 -0.10 5.88 -104.92 -0.62 -0.72 16 7 C 0.13 0.39 7.34 -14.33 -0.11 0.28 16 8 N -0.47 -1.70 10.13 -11.38 -0.12 -1.81 16 9 C 0.08 0.16 11.13 -19.36 -0.22 -0.06 16 10 C -0.26 -0.28 5.76 -35.88 -0.21 -0.49 16 11 C -0.03 0.02 2.99 36.01 0.11 0.12 16 12 O -0.53 0.03 12.87 -35.23 -0.45 -0.43 16 13 Si 0.90 -0.41 26.33 -169.99 -4.48 -4.89 16 14 H -0.24 0.02 7.11 56.52 0.40 0.43 16 15 H -0.23 -0.06 7.11 56.52 0.40 0.34 16 16 H -0.23 -0.06 7.11 56.52 0.40 0.35 16 17 S 0.07 0.10 19.72 -107.50 -2.12 -2.02 16 18 C -0.06 -0.10 9.66 -39.26 -0.38 -0.48 16 19 C -0.12 -0.06 8.81 -39.26 -0.35 -0.40 16 20 Si 1.05 -2.71 11.17 -169.99 -1.90 -4.61 16 21 C -0.45 0.84 8.65 101.05 0.87 1.72 16 22 C -0.45 0.55 8.65 101.05 0.87 1.42 16 23 C -0.45 0.93 8.51 101.05 0.86 1.79 16 24 H 0.10 -0.14 7.83 -52.49 -0.41 -0.55 16 25 H 0.11 -0.33 7.28 -52.49 -0.38 -0.71 16 26 H 0.13 -0.15 7.93 -52.49 -0.42 -0.56 16 27 H 0.12 -0.04 7.28 -52.49 -0.38 -0.43 16 28 H 0.18 0.09 8.06 -52.48 -0.42 -0.33 16 29 H 0.13 -0.21 7.96 -51.93 -0.41 -0.63 16 30 H 0.38 -1.13 8.70 45.56 0.40 -0.73 16 31 H 0.14 0.19 7.81 -52.49 -0.41 -0.22 16 32 H 0.13 -0.19 6.68 -52.48 -0.35 -0.54 16 33 H 0.07 -0.13 7.32 -51.93 -0.38 -0.51 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.06 7.63 -51.93 -0.40 -0.46 16 39 H 0.07 -0.17 7.65 -51.93 -0.40 -0.56 16 40 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 41 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 LS Contribution 360.68 15.07 5.44 5.44 Total: 0.00 -4.97 360.68 -9.10 -14.07 By element: Atomic # 1 Polarization: -3.08 SS G_CDS: -5.24 Total: -8.32 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -0.23 Total: 2.58 kcal Atomic # 7 Polarization: -1.70 SS G_CDS: -0.12 Total: -1.81 kcal Atomic # 8 Polarization: 0.03 SS G_CDS: -0.45 Total: -0.43 kcal Atomic # 14 Polarization: -3.12 SS G_CDS: -6.37 Total: -9.50 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.12 Total: -2.02 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -4.97 -9.10 -14.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11653090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.762 kcal (2) G-P(sol) polarization free energy of solvation -4.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds