Wall clock time and date at job start Mon Mar 8 2021 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32672 * 1 3 3 C 1.47681 * 120.00168 * 2 1 4 4 C 1.39700 * 119.99744 * 46.28934 * 3 2 1 5 5 C 1.37612 * 119.99759 * 179.72159 * 4 3 2 6 6 C 1.39701 * 120.00212 * 0.57952 * 5 4 3 7 7 C 1.47738 * 120.00465 * 179.67658 * 6 5 4 8 8 N 1.30282 * 125.47663 * 180.02562 * 7 6 5 9 9 C 1.31272 * 117.03477 * 180.02562 * 8 7 6 10 10 C 1.33754 * 115.85421 * 0.02562 * 9 8 7 11 11 C 1.50701 * 125.89339 * 179.97438 * 10 9 8 12 12 O 1.42902 * 109.46988 * 300.00223 * 11 10 9 13 13 Si 1.86296 * 109.47421 * 180.02562 * 11 10 9 14 14 H 1.48501 * 109.46960 * 59.99654 * 13 11 10 15 15 H 1.48497 * 109.47128 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46998 * 299.99805 * 13 11 10 17 17 S 1.76178 * 125.46970 * 359.73713 * 7 6 5 18 18 C 1.39701 * 119.99938 * 359.69244 * 6 5 4 19 19 C 1.37620 * 119.99521 * 0.02562 * 18 6 5 20 20 Si 1.86806 * 120.00125 * 180.02562 * 2 1 3 21 21 C 1.86295 * 109.47060 * 89.24362 * 20 2 1 22 22 C 1.86298 * 109.47014 * 209.24282 * 20 2 1 23 23 C 1.86299 * 109.46798 * 329.24101 * 20 2 1 24 24 H 1.07997 * 119.99742 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99681 * 179.72572 * 1 2 3 26 26 H 1.08001 * 119.99661 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.00269 * 180.26958 * 5 4 3 28 28 H 1.08007 * 122.07673 * 179.97438 * 9 8 7 29 29 H 1.08999 * 109.47105 * 59.99420 * 11 10 9 30 30 H 0.96702 * 114.00065 * 299.99835 * 12 11 10 31 31 H 1.07994 * 120.00347 * 179.97438 * 18 6 5 32 32 H 1.08004 * 119.99939 * 179.97438 * 19 18 6 33 33 H 1.08996 * 109.47406 * 59.99864 * 21 20 2 34 34 H 1.09002 * 109.46705 * 180.02562 * 21 20 2 35 35 H 1.09003 * 109.47272 * 299.99656 * 21 20 2 36 36 H 1.09006 * 109.46768 * 54.54095 * 22 20 2 37 37 H 1.08997 * 109.46865 * 174.53392 * 22 20 2 38 38 H 1.08998 * 109.47615 * 294.54256 * 22 20 2 39 39 H 1.09003 * 109.47277 * 60.00501 * 23 20 2 40 40 H 1.08997 * 109.46970 * 179.97438 * 23 20 2 41 41 H 1.08997 * 109.47407 * 300.00073 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3267 0.0000 0.0000 3 6 2.0652 1.2789 0.0000 4 6 1.6904 2.3018 0.8745 5 6 2.3821 3.4915 0.8786 6 6 3.4514 3.6807 -0.0003 7 6 4.1895 4.9605 -0.0010 8 7 5.1986 5.2510 -0.7722 9 6 5.7330 6.4418 -0.6324 10 6 5.1741 7.2267 0.2953 11 6 5.6047 8.6285 0.6426 12 8 6.9621 8.6130 1.0892 13 14 4.5136 9.2958 1.9971 14 1 4.6301 8.4303 3.1981 15 1 4.9384 10.6769 2.3396 16 1 3.1029 9.3120 1.5335 17 16 3.8418 6.3418 1.0359 18 6 3.8226 2.6599 -0.8788 19 6 3.1345 1.4681 -0.8788 20 14 2.2608 -1.6178 -0.0007 21 6 2.5512 -2.1663 -1.7572 22 6 3.8985 -1.3896 0.8574 23 6 1.2641 -2.9106 0.8970 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0045 26 1 0.8604 2.1574 1.5503 27 1 2.0952 4.2807 1.5577 28 1 6.5725 6.7674 -1.2289 29 1 5.5197 9.2637 -0.2392 30 1 7.1122 8.0661 1.8724 31 1 4.6489 2.8063 -1.5585 32 1 3.4211 0.6790 -1.5582 33 1 3.1343 -1.4099 -2.2825 34 1 3.0958 -3.1105 -1.7576 35 1 1.5930 -2.2999 -2.2593 36 1 3.7328 -0.9764 1.8524 37 1 4.4011 -2.3530 0.9432 38 1 4.5198 -0.7058 0.2790 39 1 0.3059 -3.0442 0.3949 40 1 1.8089 -3.8547 0.8962 41 1 1.0942 -2.5896 1.9247 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_11653090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:16:21 Heat of formation + Delta-G solvation = 16.018384 kcal Electronic energy + Delta-G solvation = -21060.644791 eV Core-core repulsion = 17963.171503 eV Total energy + Delta-G solvation = -3097.473288 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.093 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96282 -39.99606 -37.93579 -35.25303 -32.53124 -32.13514 -30.56307 -29.39839 -28.31346 -28.27336 -27.18802 -25.29102 -23.82570 -23.44648 -20.95643 -20.34582 -19.26097 -18.39340 -17.10912 -16.67075 -16.48274 -16.30404 -15.95875 -15.44618 -15.32775 -15.17399 -14.62684 -14.53956 -14.39005 -14.04002 -13.86910 -13.70928 -13.59822 -13.41716 -13.17396 -13.12776 -13.02255 -12.93127 -12.58324 -12.46934 -12.45445 -12.16416 -12.04682 -11.45011 -10.99961 -10.86136 -10.76300 -10.66909 -10.44369 -10.40763 -10.06264 -10.02620 -8.95616 -0.97995 0.00873 0.26116 0.38539 0.41214 1.01853 1.19536 1.33000 1.41240 1.73794 1.80977 1.89603 2.01793 2.25374 2.65710 2.88138 2.88434 3.38607 3.69285 3.80072 3.90961 3.93573 4.03368 4.35914 4.42297 4.48037 4.51434 4.72376 4.82385 4.83625 4.85482 4.88006 4.89433 4.90390 4.93860 4.98004 5.04024 5.20656 5.38140 5.41943 5.52363 5.59891 5.67381 5.70149 5.77853 5.95611 6.53427 6.55558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.393 4.393 3 C -0.011 4.011 4 C -0.125 4.125 5 C -0.093 4.093 6 C -0.063 4.063 7 C 0.120 3.880 8 N -0.491 5.491 9 C 0.062 3.938 10 C -0.253 4.253 11 C -0.028 4.028 12 O -0.542 6.542 13 Si 0.924 3.076 14 H -0.241 1.241 15 H -0.235 1.235 16 H -0.244 1.244 17 S 0.079 5.921 18 C -0.072 4.072 19 C -0.128 4.128 20 Si 1.109 2.891 21 C -0.461 4.461 22 C -0.464 4.464 23 C -0.459 4.459 24 H 0.093 0.907 25 H 0.124 0.876 26 H 0.145 0.855 27 H 0.134 0.866 28 H 0.191 0.809 29 H 0.143 0.857 30 H 0.390 0.610 31 H 0.133 0.867 32 H 0.148 0.852 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.718 -2.269 1.497 3.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.433 4.433 3 C -0.013 4.013 4 C -0.143 4.143 5 C -0.114 4.114 6 C -0.067 4.067 7 C -0.153 4.153 8 N -0.204 5.204 9 C -0.090 4.090 10 C -0.374 4.374 11 C -0.142 4.142 12 O -0.349 6.349 13 Si 0.744 3.256 14 H -0.164 1.164 15 H -0.158 1.158 16 H -0.168 1.168 17 S 0.336 5.664 18 C -0.094 4.094 19 C -0.146 4.146 20 Si 1.297 2.703 21 C -0.568 4.568 22 C -0.571 4.571 23 C -0.566 4.566 24 H 0.111 0.889 25 H 0.142 0.858 26 H 0.162 0.838 27 H 0.151 0.849 28 H 0.208 0.792 29 H 0.160 0.840 30 H 0.240 0.760 31 H 0.151 0.849 32 H 0.166 0.834 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.724 -1.545 2.085 4.539 hybrid contribution 0.966 0.110 -0.431 1.063 sum -2.758 -1.435 1.655 3.522 Atomic orbital electron populations 1.24564 0.95322 1.02899 0.92902 1.28313 1.01493 1.08051 1.05468 1.19409 0.94245 0.93741 0.93879 1.21425 1.00446 0.92192 1.00207 1.21231 0.94162 0.98501 0.97492 1.18004 0.97549 0.90414 1.00757 1.26110 0.96008 0.97545 0.95629 1.66616 1.09763 1.19527 1.24520 1.21800 1.01389 0.87750 0.98070 1.26482 1.02249 1.04133 1.04514 1.24339 0.89886 0.91542 1.08429 1.86520 1.24509 1.72756 1.51081 0.85916 0.78732 0.82759 0.78149 1.16396 1.15802 1.16782 1.84898 1.32174 1.09405 1.39966 1.21261 0.99050 0.92186 0.96892 1.21434 0.95647 0.97686 0.99789 0.77439 0.64494 0.61954 0.66459 1.26285 1.05164 1.06090 1.19255 1.26341 1.18107 1.04634 1.07988 1.26242 1.09554 1.12359 1.08479 0.88869 0.85792 0.83761 0.84857 0.79229 0.83977 0.76020 0.84933 0.83400 0.91184 0.90785 0.90905 0.91803 0.90913 0.91552 0.90531 0.90769 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.50 13.30 66.65 0.89 1.38 16 2 C -0.39 1.07 4.41 23.60 0.10 1.17 16 3 C -0.01 -0.01 5.27 -20.08 -0.11 -0.12 16 4 C -0.12 -0.14 9.30 22.48 0.21 0.07 16 5 C -0.09 -0.27 9.59 22.48 0.22 -0.05 16 6 C -0.06 -0.37 5.88 -20.06 -0.12 -0.49 16 7 C 0.12 0.86 7.34 87.44 0.64 1.50 16 8 N -0.49 -4.25 10.13 -189.93 -1.92 -6.18 16 9 C 0.06 0.31 11.13 83.76 0.93 1.24 16 10 C -0.25 -0.64 5.76 24.67 0.14 -0.50 16 11 C -0.03 0.03 2.99 71.24 0.21 0.25 16 12 O -0.54 0.24 12.87 -148.98 -1.92 -1.68 16 13 Si 0.92 -0.91 26.33 68.60 1.81 0.90 16 14 H -0.24 0.06 7.11 99.48 0.71 0.77 16 15 H -0.24 -0.10 7.11 99.48 0.71 0.61 16 16 H -0.24 -0.15 7.11 99.48 0.71 0.56 16 17 S 0.08 0.28 19.72 -56.49 -1.11 -0.83 16 18 C -0.07 -0.35 9.66 22.48 0.22 -0.13 16 19 C -0.13 -0.21 8.81 22.48 0.20 -0.01 16 20 Si 1.11 -6.28 11.17 68.60 0.77 -5.51 16 21 C -0.46 1.97 8.65 113.37 0.98 2.95 16 22 C -0.46 0.97 8.65 113.37 0.98 1.95 16 23 C -0.46 2.33 8.51 113.37 0.96 3.29 16 24 H 0.09 -0.35 7.83 -2.91 -0.02 -0.37 16 25 H 0.12 -0.97 7.28 -2.91 -0.02 -0.99 16 26 H 0.14 -0.38 7.93 -2.91 -0.02 -0.40 16 27 H 0.13 0.00 7.28 -2.91 -0.02 -0.02 16 28 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 29 H 0.14 -0.56 7.96 -2.39 -0.02 -0.57 16 30 H 0.39 -2.41 8.70 -74.06 -0.64 -3.06 16 31 H 0.13 0.64 7.81 -2.91 -0.02 0.62 16 32 H 0.15 -0.37 6.68 -2.91 -0.02 -0.39 16 33 H 0.07 -0.28 7.32 -2.39 -0.02 -0.30 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 36 H 0.06 -0.05 7.96 -2.38 -0.02 -0.07 16 37 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 38 H 0.07 -0.07 7.63 -2.39 -0.02 -0.08 16 39 H 0.08 -0.47 7.65 -2.39 -0.02 -0.49 16 40 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 41 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 Total: 0.00 -11.52 360.68 5.22 -6.30 By element: Atomic # 1 Polarization: -6.66 SS G_CDS: 1.14 Total: -5.53 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 6.46 Total: 12.52 kcal Atomic # 7 Polarization: -4.25 SS G_CDS: -1.92 Total: -6.18 kcal Atomic # 8 Polarization: 0.24 SS G_CDS: -1.92 Total: -1.68 kcal Atomic # 14 Polarization: -7.19 SS G_CDS: 2.57 Total: -4.61 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.11 Total: -0.83 kcal Total: -11.52 5.22 -6.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11653090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.319 kcal (2) G-P(sol) polarization free energy of solvation -11.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds