Wall clock time and date at job start Mon Mar 8 2021 07:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47806 * 120.00418 * 2 1 4 4 C 1.39517 * 120.14374 * 180.02562 * 3 2 1 5 5 C 1.37997 * 119.85449 * 180.02562 * 4 3 2 6 6 C 1.38323 * 120.14176 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.85228 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.47328 * 104.99775 * 7 6 5 9 9 Si 1.86299 * 109.47180 * 344.99384 * 7 6 5 10 10 H 1.48493 * 109.46923 * 60.00607 * 9 7 6 11 11 H 1.48496 * 109.46886 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47094 * 300.00458 * 9 7 6 13 13 C 1.38361 * 120.29001 * 359.97438 * 6 5 4 14 14 C 1.50704 * 119.93067 * 180.02562 * 13 6 5 15 15 C 1.37954 * 120.14037 * 359.76753 * 13 6 5 16 16 Si 1.86801 * 119.99740 * 179.97438 * 2 1 3 17 17 C 1.86298 * 109.47258 * 359.97438 * 16 2 1 18 18 C 1.86298 * 109.47026 * 120.00111 * 16 2 1 19 19 C 1.86301 * 109.47053 * 240.00125 * 16 2 1 20 20 H 1.08002 * 120.00489 * 180.02562 * 1 2 3 21 21 H 1.08005 * 119.99743 * 359.72519 * 1 2 3 22 22 H 1.07997 * 120.07044 * 0.02562 * 4 3 2 23 23 H 1.08001 * 119.92349 * 180.02562 * 5 4 3 24 24 H 1.09002 * 109.46786 * 224.99814 * 7 6 5 25 25 H 0.96693 * 113.99815 * 299.99815 * 8 7 6 26 26 H 1.08996 * 109.46454 * 90.00431 * 14 13 6 27 27 H 1.08995 * 109.46940 * 209.99967 * 14 13 6 28 28 H 1.08994 * 109.46876 * 330.00482 * 14 13 6 29 29 H 1.08003 * 120.07525 * 180.25439 * 15 13 6 30 30 H 1.09005 * 109.47054 * 60.00202 * 17 16 2 31 31 H 1.08995 * 109.47563 * 179.97438 * 17 16 2 32 32 H 1.09004 * 109.47189 * 300.00136 * 17 16 2 33 33 H 1.08998 * 109.47156 * 60.00082 * 18 16 2 34 34 H 1.09003 * 109.47006 * 180.02562 * 18 16 2 35 35 H 1.08997 * 109.46887 * 299.99740 * 18 16 2 36 36 H 1.08999 * 109.47593 * 60.00210 * 19 16 2 37 37 H 1.09003 * 109.47036 * 179.97438 * 19 16 2 38 38 H 1.08998 * 109.47195 * 299.99958 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 3.4599 1.2834 -0.0005 5 6 4.1440 2.4819 0.0000 6 6 3.4494 3.6781 0.0016 7 6 4.2030 4.9832 0.0016 8 8 4.1378 5.5709 -1.2993 9 14 5.9833 4.6723 0.4541 10 1 6.5920 3.7493 -0.5372 11 1 6.7256 5.9583 0.4547 12 1 6.0510 4.0615 1.8059 13 6 2.0658 3.6816 0.0021 14 6 1.3172 4.9896 0.0033 15 6 1.3700 2.4904 -0.0038 16 14 2.2596 -1.6178 0.0007 17 6 1.0489 -3.0338 0.0021 18 6 3.3307 -1.7172 -1.5203 19 6 3.3306 -1.7158 1.5219 20 1 -0.5401 -0.9353 0.0004 21 1 -0.5400 0.9354 0.0045 22 1 4.0034 0.3501 -0.0014 23 1 5.2240 2.4858 -0.0008 24 1 3.7562 5.6607 0.7292 25 1 4.5182 5.0218 -1.9984 26 1 1.1363 5.3055 -1.0241 27 1 0.3645 4.8625 0.5174 28 1 1.9094 5.7466 0.5173 29 1 0.2900 2.4944 -0.0075 30 1 0.4219 -2.9766 -0.8877 31 1 1.5938 -3.9778 0.0021 32 1 0.4226 -2.9754 0.8923 33 1 4.0390 -0.8887 -1.5207 34 1 3.8753 -2.6614 -1.5201 35 1 2.7040 -1.6598 -2.4103 36 1 2.7040 -1.6577 2.4119 37 1 3.8752 -2.6601 1.5226 38 1 4.0390 -0.8874 1.5216 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_11653150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:18:56 Heat of formation + Delta-G solvation = -40.640489 kcal Electronic energy + Delta-G solvation = -16461.617449 eV Core-core repulsion = 14006.403093 eV Total energy + Delta-G solvation = -2455.214356 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77535 -37.75950 -35.17041 -33.58503 -31.16183 -29.68677 -28.58680 -28.42834 -27.86626 -26.45953 -23.43339 -22.30515 -20.03289 -18.40370 -17.33994 -16.61763 -16.31473 -15.83191 -15.44355 -15.00473 -14.46019 -14.36579 -14.31601 -14.16307 -14.05092 -13.54231 -13.44180 -13.37706 -13.22961 -13.17284 -13.10069 -12.99153 -12.88754 -12.31382 -12.11749 -11.84764 -11.50490 -11.47608 -10.94509 -10.71245 -10.64864 -10.35456 -9.65044 -9.04289 -0.04739 0.46643 1.16896 1.30306 1.42331 1.53974 1.68155 1.81339 1.92195 2.09474 2.52100 2.94261 3.50503 3.75717 3.86643 3.94280 3.98347 4.32300 4.40824 4.55631 4.61595 4.66374 4.66524 4.71315 4.72234 4.74125 4.76384 4.84015 4.86239 4.89868 5.03739 5.19362 5.28934 5.39435 5.42871 5.50886 5.52207 5.58215 5.70633 5.86334 6.09113 6.56840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.372 4.372 3 C -0.022 4.022 4 C -0.126 4.126 5 C -0.119 4.119 6 C -0.128 4.128 7 C -0.079 4.079 8 O -0.537 6.537 9 Si 0.946 3.054 10 H -0.252 1.252 11 H -0.254 1.254 12 H -0.249 1.249 13 C -0.051 4.051 14 C -0.116 4.116 15 C -0.122 4.122 16 Si 1.046 2.954 17 C -0.450 4.450 18 C -0.450 4.450 19 C -0.450 4.450 20 H 0.107 0.893 21 H 0.096 0.904 22 H 0.130 0.870 23 H 0.123 0.877 24 H 0.116 0.884 25 H 0.375 0.625 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.125 0.875 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 -1.798 0.104 1.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.413 4.413 3 C -0.022 4.022 4 C -0.144 4.144 5 C -0.137 4.137 6 C -0.128 4.128 7 C -0.189 4.189 8 O -0.342 6.342 9 Si 0.769 3.231 10 H -0.176 1.176 11 H -0.178 1.178 12 H -0.173 1.173 13 C -0.051 4.051 14 C -0.173 4.173 15 C -0.140 4.140 16 Si 1.238 2.762 17 C -0.558 4.558 18 C -0.558 4.558 19 C -0.558 4.558 20 H 0.125 0.875 21 H 0.114 0.886 22 H 0.147 0.853 23 H 0.141 0.859 24 H 0.134 0.866 25 H 0.222 0.778 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.143 0.857 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.222 -1.395 0.668 1.562 hybrid contribution -0.361 -0.317 -0.384 0.615 sum -0.140 -1.712 0.284 1.741 Atomic orbital electron populations 1.24431 0.95869 1.02082 0.94605 1.28059 1.01152 1.08290 1.03828 1.18956 0.92869 0.92887 0.97480 1.21272 0.93572 0.97980 1.01563 1.21021 0.99647 0.92407 1.00624 1.20143 0.94101 0.94854 1.03752 1.24945 1.10073 0.94588 0.89329 1.86513 1.84815 1.46729 1.16107 0.85749 0.75408 0.80602 0.81329 1.17581 1.17797 1.17266 1.19693 0.92808 0.95442 0.97189 1.20846 0.99476 0.94006 1.02934 1.21288 0.99891 0.91364 1.01431 0.78390 0.66476 0.63599 0.67745 1.26146 1.11363 1.13716 1.04569 1.26205 1.09726 1.04591 1.15237 1.26209 1.09738 1.04595 1.15245 0.87500 0.88616 0.85277 0.85927 0.86578 0.77771 0.90570 0.91812 0.91024 0.85741 0.91052 0.90812 0.91047 0.91022 0.91002 0.91022 0.91019 0.90998 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.07 13.39 28.82 0.39 0.46 16 2 C -0.37 0.00 4.70 -37.58 -0.18 -0.18 16 3 C -0.02 -0.03 5.84 -105.01 -0.61 -0.65 16 4 C -0.13 -0.14 8.71 -39.19 -0.34 -0.48 16 5 C -0.12 -0.14 8.64 -39.64 -0.34 -0.48 16 6 C -0.13 -0.17 5.27 -104.54 -0.55 -0.72 16 7 C -0.08 -0.02 2.04 36.01 0.07 0.06 16 8 O -0.54 -0.36 12.80 -35.23 -0.45 -0.81 16 9 Si 0.95 -0.04 25.48 -169.99 -4.33 -4.37 16 10 H -0.25 0.05 6.72 56.52 0.38 0.43 16 11 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 12 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 13 C -0.05 -0.09 5.87 -104.68 -0.61 -0.70 16 14 C -0.12 -0.05 9.53 36.01 0.34 0.30 16 15 C -0.12 -0.21 9.05 -39.19 -0.35 -0.56 16 16 Si 1.05 -2.06 10.80 -169.99 -1.84 -3.90 16 17 C -0.45 0.76 7.86 101.05 0.79 1.55 16 18 C -0.45 0.55 8.65 101.05 0.87 1.42 16 19 C -0.45 0.52 8.65 101.05 0.87 1.40 16 20 H 0.11 -0.22 7.05 -52.49 -0.37 -0.59 16 21 H 0.10 -0.08 6.04 -52.48 -0.32 -0.39 16 22 H 0.13 -0.11 3.71 -52.49 -0.19 -0.30 16 23 H 0.12 -0.04 4.86 -52.49 -0.26 -0.29 16 24 H 0.12 -0.06 6.48 -51.93 -0.34 -0.39 16 25 H 0.38 -0.86 8.70 45.56 0.40 -0.46 16 26 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 27 H 0.06 -0.03 8.08 -51.93 -0.42 -0.45 16 28 H 0.07 0.01 6.22 -51.93 -0.32 -0.32 16 29 H 0.12 0.06 6.17 -52.48 -0.32 -0.27 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.08 6.57 -51.93 -0.34 -0.42 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 36 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 38 H 0.07 -0.07 6.58 -51.93 -0.34 -0.41 16 LS Contribution 302.56 15.07 4.56 4.56 Total: 0.00 -4.03 302.56 -6.67 -10.70 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -4.96 Total: -7.60 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 0.35 Total: 1.42 kcal Atomic # 8 Polarization: -0.36 SS G_CDS: -0.45 Total: -0.81 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: -6.17 Total: -8.27 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -4.03 -6.67 -10.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11653150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.945 kcal (2) G-P(sol) polarization free energy of solvation -4.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds