Wall clock time and date at job start Mon Mar 8 2021 07:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47806 * 120.00418 * 2 1 4 4 C 1.39517 * 120.14374 * 180.02562 * 3 2 1 5 5 C 1.37997 * 119.85449 * 180.02562 * 4 3 2 6 6 C 1.38323 * 120.14176 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.85228 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.47328 * 104.99775 * 7 6 5 9 9 Si 1.86299 * 109.47180 * 344.99384 * 7 6 5 10 10 H 1.48493 * 109.46923 * 60.00607 * 9 7 6 11 11 H 1.48496 * 109.46886 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47094 * 300.00458 * 9 7 6 13 13 C 1.38361 * 120.29001 * 359.97438 * 6 5 4 14 14 C 1.50704 * 119.93067 * 180.02562 * 13 6 5 15 15 C 1.37954 * 120.14037 * 359.76753 * 13 6 5 16 16 Si 1.86801 * 119.99740 * 179.97438 * 2 1 3 17 17 C 1.86298 * 109.47258 * 359.97438 * 16 2 1 18 18 C 1.86298 * 109.47026 * 120.00111 * 16 2 1 19 19 C 1.86301 * 109.47053 * 240.00125 * 16 2 1 20 20 H 1.08002 * 120.00489 * 180.02562 * 1 2 3 21 21 H 1.08005 * 119.99743 * 359.72519 * 1 2 3 22 22 H 1.07997 * 120.07044 * 0.02562 * 4 3 2 23 23 H 1.08001 * 119.92349 * 180.02562 * 5 4 3 24 24 H 1.09002 * 109.46786 * 224.99814 * 7 6 5 25 25 H 0.96693 * 113.99815 * 299.99815 * 8 7 6 26 26 H 1.08996 * 109.46454 * 90.00431 * 14 13 6 27 27 H 1.08995 * 109.46940 * 209.99967 * 14 13 6 28 28 H 1.08994 * 109.46876 * 330.00482 * 14 13 6 29 29 H 1.08003 * 120.07525 * 180.25439 * 15 13 6 30 30 H 1.09005 * 109.47054 * 60.00202 * 17 16 2 31 31 H 1.08995 * 109.47563 * 179.97438 * 17 16 2 32 32 H 1.09004 * 109.47189 * 300.00136 * 17 16 2 33 33 H 1.08998 * 109.47156 * 60.00082 * 18 16 2 34 34 H 1.09003 * 109.47006 * 180.02562 * 18 16 2 35 35 H 1.08997 * 109.46887 * 299.99740 * 18 16 2 36 36 H 1.08999 * 109.47593 * 60.00210 * 19 16 2 37 37 H 1.09003 * 109.47036 * 179.97438 * 19 16 2 38 38 H 1.08998 * 109.47195 * 299.99958 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 3.4599 1.2834 -0.0005 5 6 4.1440 2.4819 0.0000 6 6 3.4494 3.6781 0.0016 7 6 4.2030 4.9832 0.0016 8 8 4.1378 5.5709 -1.2993 9 14 5.9833 4.6723 0.4541 10 1 6.5920 3.7493 -0.5372 11 1 6.7256 5.9583 0.4547 12 1 6.0510 4.0615 1.8059 13 6 2.0658 3.6816 0.0021 14 6 1.3172 4.9896 0.0033 15 6 1.3700 2.4904 -0.0038 16 14 2.2596 -1.6178 0.0007 17 6 1.0489 -3.0338 0.0021 18 6 3.3307 -1.7172 -1.5203 19 6 3.3306 -1.7158 1.5219 20 1 -0.5401 -0.9353 0.0004 21 1 -0.5400 0.9354 0.0045 22 1 4.0034 0.3501 -0.0014 23 1 5.2240 2.4858 -0.0008 24 1 3.7562 5.6607 0.7292 25 1 4.5182 5.0218 -1.9984 26 1 1.1363 5.3055 -1.0241 27 1 0.3645 4.8625 0.5174 28 1 1.9094 5.7466 0.5173 29 1 0.2900 2.4944 -0.0075 30 1 0.4219 -2.9766 -0.8877 31 1 1.5938 -3.9778 0.0021 32 1 0.4226 -2.9754 0.8923 33 1 4.0390 -0.8887 -1.5207 34 1 3.8753 -2.6614 -1.5201 35 1 2.7040 -1.6598 -2.4103 36 1 2.7040 -1.6577 2.4119 37 1 3.8752 -2.6601 1.5226 38 1 4.0390 -0.8874 1.5216 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_11653150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:18:55 Heat of formation + Delta-G solvation = -31.307679 kcal Electronic energy + Delta-G solvation = -16461.212748 eV Core-core repulsion = 14006.403093 eV Total energy + Delta-G solvation = -2454.809655 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.80838 -37.77452 -35.16031 -33.61637 -31.15914 -29.56624 -28.46524 -28.30409 -27.87635 -26.46139 -23.46799 -22.32232 -20.02133 -18.42342 -17.35348 -16.63768 -16.32573 -15.85361 -15.42598 -15.02692 -14.47495 -14.34863 -14.27943 -14.05232 -13.90927 -13.48216 -13.38701 -13.33587 -13.14969 -13.10991 -13.03320 -12.95256 -12.79709 -12.32336 -12.18097 -11.86261 -11.51792 -11.42825 -10.80351 -10.65086 -10.57600 -10.37103 -9.71872 -9.06505 -0.07677 0.39563 1.16352 1.34458 1.41785 1.51763 1.81349 1.88950 1.98280 2.20197 2.64232 2.90362 3.53866 3.74959 3.87284 3.92049 3.97319 4.30093 4.40050 4.55929 4.62038 4.79629 4.80658 4.81955 4.83078 4.84488 4.84596 4.86645 4.90046 4.92723 5.02184 5.18628 5.27226 5.38838 5.51327 5.57619 5.64233 5.64556 5.69093 5.87303 6.06744 6.68855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.390 4.390 3 C -0.033 4.033 4 C -0.136 4.136 5 C -0.129 4.129 6 C -0.136 4.136 7 C -0.078 4.078 8 O -0.549 6.549 9 Si 0.977 3.023 10 H -0.247 1.247 11 H -0.273 1.273 12 H -0.260 1.260 13 C -0.065 4.065 14 C -0.114 4.114 15 C -0.138 4.138 16 Si 1.098 2.902 17 C -0.458 4.458 18 C -0.462 4.462 19 C -0.463 4.463 20 H 0.123 0.877 21 H 0.093 0.907 22 H 0.145 0.855 23 H 0.135 0.865 24 H 0.120 0.880 25 H 0.387 0.613 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -2.439 0.029 2.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.430 4.430 3 C -0.033 4.033 4 C -0.154 4.154 5 C -0.146 4.146 6 C -0.137 4.137 7 C -0.188 4.188 8 O -0.356 6.356 9 Si 0.802 3.198 10 H -0.171 1.171 11 H -0.199 1.199 12 H -0.185 1.185 13 C -0.065 4.065 14 C -0.170 4.170 15 C -0.155 4.155 16 Si 1.286 2.714 17 C -0.566 4.566 18 C -0.569 4.569 19 C -0.570 4.570 20 H 0.141 0.859 21 H 0.111 0.889 22 H 0.162 0.838 23 H 0.152 0.848 24 H 0.138 0.862 25 H 0.236 0.764 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.148 0.852 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.225 -2.033 0.580 2.126 hybrid contribution -0.380 -0.109 -0.362 0.536 sum -0.154 -2.142 0.218 2.158 Atomic orbital electron populations 1.24641 0.95921 1.02797 0.93902 1.28477 1.01640 1.08660 1.04253 1.19228 0.93321 0.93482 0.97277 1.21533 0.93703 0.98707 1.01410 1.21248 1.00383 0.92467 1.00536 1.20304 0.94175 0.95394 1.03801 1.24989 1.10238 0.94247 0.89341 1.86480 1.85087 1.47403 1.16627 0.85305 0.74602 0.79314 0.80594 1.17074 1.19868 1.18464 1.19909 0.93244 0.95908 0.97425 1.20840 0.99763 0.93595 1.02842 1.21491 1.00425 0.91702 1.01923 0.77601 0.65288 0.62070 0.66405 1.26227 1.11619 1.13975 1.04790 1.26344 1.10030 1.04819 1.15701 1.26356 1.10051 1.04807 1.15754 0.85940 0.88851 0.83792 0.84760 0.86195 0.76436 0.90877 0.91130 0.90782 0.85159 0.90837 0.90512 0.90846 0.91212 0.90472 0.91334 0.91353 0.90462 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.16 13.39 66.67 0.89 1.05 16 2 C -0.39 -0.03 4.70 23.65 0.11 0.08 16 3 C -0.03 -0.12 5.84 -20.12 -0.12 -0.23 16 4 C -0.14 -0.34 8.71 22.52 0.20 -0.14 16 5 C -0.13 -0.33 8.64 22.23 0.19 -0.14 16 6 C -0.14 -0.43 5.27 -19.81 -0.10 -0.54 16 7 C -0.08 -0.06 2.04 71.24 0.15 0.08 16 8 O -0.55 -0.86 12.80 -148.98 -1.91 -2.77 16 9 Si 0.98 0.09 25.48 68.60 1.75 1.84 16 10 H -0.25 0.22 6.72 99.48 0.67 0.89 16 11 H -0.27 -0.88 7.11 99.48 0.71 -0.17 16 12 H -0.26 -0.48 7.11 99.48 0.71 0.23 16 13 C -0.06 -0.27 5.87 -19.90 -0.12 -0.38 16 14 C -0.11 -0.16 9.53 71.24 0.68 0.51 16 15 C -0.14 -0.58 9.05 22.52 0.20 -0.38 16 16 Si 1.10 -4.76 10.80 68.60 0.74 -4.02 16 17 C -0.46 1.91 7.86 113.37 0.89 2.80 16 18 C -0.46 1.27 8.65 113.37 0.98 2.25 16 19 C -0.46 1.20 8.65 113.37 0.98 2.18 16 20 H 0.12 -0.58 7.05 -2.91 -0.02 -0.60 16 21 H 0.09 -0.11 6.04 -2.91 -0.02 -0.13 16 22 H 0.14 -0.24 3.71 -2.91 -0.01 -0.25 16 23 H 0.13 -0.10 4.86 -2.91 -0.01 -0.11 16 24 H 0.12 -0.06 6.48 -2.39 -0.02 -0.08 16 25 H 0.39 -1.70 8.70 -74.06 -0.64 -2.34 16 26 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 27 H 0.07 -0.02 8.08 -2.39 -0.02 -0.04 16 28 H 0.07 0.05 6.22 -2.39 -0.01 0.04 16 29 H 0.13 0.24 6.17 -2.91 -0.02 0.22 16 30 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 31 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 32 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 33 H 0.07 -0.16 6.57 -2.39 -0.02 -0.18 16 34 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 35 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 36 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 37 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 38 H 0.07 -0.15 6.58 -2.39 -0.02 -0.16 16 Total: 0.00 -8.96 302.56 6.64 -2.32 By element: Atomic # 1 Polarization: -5.65 SS G_CDS: 1.12 Total: -4.53 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 4.93 Total: 7.15 kcal Atomic # 8 Polarization: -0.86 SS G_CDS: -1.91 Total: -2.77 kcal Atomic # 14 Polarization: -4.66 SS G_CDS: 2.49 Total: -2.17 kcal Total: -8.96 6.64 -2.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11653150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.985 kcal (2) G-P(sol) polarization free energy of solvation -8.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds