Wall clock time and date at job start Mon Mar 8 2021 07:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32612 * 1 3 3 C 1.47740 * 120.00292 * 2 1 4 4 C 1.39468 * 120.17097 * 243.77494 * 3 2 1 5 5 C 1.37997 * 119.91105 * 179.97438 * 4 3 2 6 6 C 1.38376 * 120.25811 * 359.97438 * 5 4 3 7 7 C 1.38238 * 120.34444 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.95379 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.46859 * 255.00031 * 8 7 6 10 10 Si 1.86298 * 109.46854 * 14.99591 * 8 7 6 11 11 H 1.48505 * 109.47386 * 60.00338 * 10 8 7 12 12 H 1.48503 * 109.47127 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47686 * 300.00000 * 10 8 7 14 14 C 1.38506 * 120.08962 * 359.74263 * 7 6 5 15 15 O 1.35835 * 120.13330 * 180.28440 * 14 7 6 16 16 C 1.42901 * 116.99269 * 266.69906 * 15 14 7 17 17 Si 1.86801 * 119.99875 * 179.97438 * 2 1 3 18 18 C 1.86300 * 109.46940 * 0.02562 * 17 2 1 19 19 C 1.86303 * 109.46825 * 120.00157 * 17 2 1 20 20 C 1.86292 * 109.47588 * 240.00480 * 17 2 1 21 21 H 1.07992 * 120.00573 * 176.89226 * 1 2 3 22 22 H 1.08006 * 119.99739 * 356.62237 * 1 2 3 23 23 H 1.07997 * 120.04152 * 359.95406 * 4 3 2 24 24 H 1.07997 * 119.86981 * 179.97438 * 5 4 3 25 25 H 1.07999 * 119.82322 * 179.97438 * 6 5 4 26 26 H 1.08994 * 109.47087 * 134.99687 * 8 7 6 27 27 H 0.96697 * 114.00125 * 59.99859 * 9 8 7 28 28 H 1.08992 * 109.47087 * 299.99558 * 16 15 14 29 29 H 1.09000 * 109.47556 * 60.00373 * 16 15 14 30 30 H 1.09001 * 109.46472 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.47800 * 59.99496 * 18 17 2 32 32 H 1.08998 * 109.47034 * 179.97438 * 18 17 2 33 33 H 1.09000 * 109.46824 * 299.99466 * 18 17 2 34 34 H 1.09004 * 109.47022 * 60.00379 * 19 17 2 35 35 H 1.08998 * 109.47171 * 180.02562 * 19 17 2 36 36 H 1.08995 * 109.47313 * 300.00497 * 19 17 2 37 37 H 1.09000 * 109.47122 * 59.99955 * 20 17 2 38 38 H 1.08998 * 109.47148 * 180.02562 * 20 17 2 39 39 H 1.09004 * 109.46986 * 300.00065 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0649 1.2794 0.0000 4 6 2.8768 1.6200 -1.0816 5 6 3.5640 2.8167 -1.0762 6 6 3.4505 3.6811 -0.0017 7 6 2.6488 3.3542 1.0760 8 6 2.5311 4.3025 2.2414 9 8 3.2876 3.7983 3.3439 10 14 3.1889 5.9748 1.7500 11 1 2.4028 6.4988 0.6042 12 1 3.0724 6.9094 2.8982 13 1 4.6151 5.8496 1.3558 14 6 1.9489 2.1590 1.0834 15 8 1.1563 1.8395 2.1393 16 6 1.7438 1.0511 3.1762 17 14 2.2601 -1.6178 0.0007 18 6 1.0494 -3.0337 0.0006 19 6 3.3312 -1.7171 -1.5204 20 6 3.3310 -1.7160 1.5219 21 1 -0.5401 -0.9338 -0.0507 22 1 -0.5400 0.9338 0.0551 23 1 2.9678 0.9479 -1.9221 24 1 4.1929 3.0795 -1.9140 25 1 3.9918 4.6156 -0.0046 26 1 1.4843 4.3944 2.5307 27 1 4.2304 3.6907 3.1576 28 1 2.0793 0.0998 2.7634 29 1 2.5952 1.5839 3.5997 30 1 1.0051 0.8686 3.9566 31 1 0.4230 -2.9762 -0.8896 32 1 1.5943 -3.9777 0.0005 33 1 0.4225 -2.9758 0.8904 34 1 4.0395 -0.8886 -1.5207 35 1 3.8758 -2.6612 -1.5203 36 1 2.7046 -1.6596 -2.4104 37 1 2.7044 -1.6579 2.4118 38 1 3.8763 -2.6598 1.5220 39 1 4.0394 -0.8875 1.5216 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_11653250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:20:19 Heat of formation + Delta-G solvation = -70.171414 kcal Electronic energy + Delta-G solvation = -19108.109421 eV Core-core repulsion = 16332.932316 eV Total energy + Delta-G solvation = -2775.177105 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18243 -38.14081 -37.67450 -34.83611 -32.04979 -30.46494 -29.58146 -28.68663 -28.42608 -27.55050 -26.48365 -23.98993 -22.42097 -20.36884 -18.86300 -17.98898 -17.02756 -16.69911 -16.55496 -15.87372 -15.62961 -15.52969 -14.92305 -14.62498 -14.50126 -14.17891 -14.04687 -13.94476 -13.59082 -13.50976 -13.27085 -13.24148 -13.14200 -13.02895 -12.71601 -12.38216 -12.17203 -11.95939 -11.60670 -11.29783 -11.12019 -10.93297 -10.72204 -10.42176 -10.08229 -9.66066 -9.27439 0.16800 0.24489 1.09799 1.17642 1.41409 1.54034 1.72511 1.82964 1.92203 2.07830 2.46608 2.62633 3.10524 3.50432 3.73913 3.84373 4.04267 4.32128 4.42736 4.50342 4.59328 4.61998 4.65364 4.66378 4.69807 4.70478 4.71625 4.72886 4.75912 4.86930 4.96780 5.00414 5.22765 5.37615 5.42650 5.48111 5.50951 5.52560 5.59665 5.75856 5.87775 6.54960 6.71976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.378 4.378 3 C -0.051 4.051 4 C -0.104 4.104 5 C -0.116 4.116 6 C -0.124 4.124 7 C -0.137 4.137 8 C -0.075 4.075 9 O -0.536 6.536 10 Si 0.952 3.048 11 H -0.250 1.250 12 H -0.254 1.254 13 H -0.253 1.253 14 C 0.124 3.876 15 O -0.329 6.329 16 C 0.029 3.971 17 Si 1.046 2.954 18 C -0.449 4.449 19 C -0.449 4.449 20 C -0.449 4.449 21 H 0.105 0.895 22 H 0.095 0.905 23 H 0.132 0.868 24 H 0.128 0.872 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.373 0.627 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.634 -1.781 -1.114 2.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.419 4.419 3 C -0.052 4.052 4 C -0.122 4.122 5 C -0.134 4.134 6 C -0.142 4.142 7 C -0.138 4.138 8 C -0.185 4.185 9 O -0.341 6.341 10 Si 0.775 3.225 11 H -0.173 1.173 12 H -0.178 1.178 13 H -0.177 1.177 14 C 0.080 3.920 15 O -0.246 6.246 16 C -0.065 4.065 17 Si 1.238 2.762 18 C -0.557 4.557 19 C -0.556 4.556 20 C -0.556 4.556 21 H 0.123 0.877 22 H 0.113 0.887 23 H 0.150 0.850 24 H 0.146 0.854 25 H 0.143 0.857 26 H 0.137 0.863 27 H 0.219 0.781 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.137 -0.840 -1.020 1.743 hybrid contribution 0.424 -0.363 -0.198 0.592 sum 1.561 -1.203 -1.218 2.317 Atomic orbital electron populations 1.24295 0.95422 1.01909 0.93032 1.27740 1.00925 1.07408 1.05802 1.19363 0.97394 0.94017 0.94416 1.21267 0.96177 0.97033 0.97685 1.21056 0.99831 0.94198 0.98329 1.21051 0.99060 1.00131 0.93962 1.20545 0.98432 0.97336 0.97439 1.24910 1.01546 1.04552 0.87516 1.86533 1.23513 1.87968 1.36043 0.85684 0.80434 0.75916 0.80512 1.17302 1.17750 1.17663 1.18535 0.92728 0.92169 0.88553 1.85917 1.36872 1.72059 1.29721 1.23196 0.99927 0.94298 0.89051 0.78400 0.66341 0.63595 0.67912 1.26141 1.11342 1.13620 1.04624 1.26153 1.09743 1.04637 1.15089 1.26179 1.09777 1.04588 1.15084 0.87735 0.88665 0.84986 0.85357 0.85738 0.86291 0.78064 0.93269 0.92097 0.89314 0.91010 0.90853 0.91043 0.90978 0.91029 0.91039 0.91083 0.90901 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.04 13.18 28.83 0.38 0.34 16 2 C -0.38 -0.09 3.68 -37.60 -0.14 -0.23 16 3 C -0.05 -0.08 4.94 -104.88 -0.52 -0.60 16 4 C -0.10 -0.07 9.13 -39.21 -0.36 -0.42 16 5 C -0.12 -0.03 10.03 -39.62 -0.40 -0.43 16 6 C -0.12 -0.10 8.65 -39.53 -0.34 -0.44 16 7 C -0.14 -0.24 5.27 -104.52 -0.55 -0.79 16 8 C -0.07 -0.07 2.38 36.01 0.09 0.02 16 9 O -0.54 -0.39 11.29 -35.23 -0.40 -0.78 16 10 Si 0.95 0.14 25.49 -169.99 -4.33 -4.19 16 11 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 12 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 13 H -0.25 0.07 6.73 56.52 0.38 0.45 16 14 C 0.12 0.33 5.65 -38.81 -0.22 0.11 16 15 O -0.33 -1.02 8.86 -19.22 -0.17 -1.19 16 16 C 0.03 0.03 11.07 101.05 1.12 1.15 16 17 Si 1.05 -2.04 12.18 -169.99 -2.07 -4.11 16 18 C -0.45 0.74 7.87 101.05 0.80 1.53 16 19 C -0.45 0.71 8.11 101.05 0.82 1.53 16 20 C -0.45 0.52 7.84 101.05 0.79 1.31 16 21 H 0.10 -0.15 7.06 -52.49 -0.37 -0.52 16 22 H 0.10 0.15 8.05 -52.48 -0.42 -0.27 16 23 H 0.13 -0.14 6.82 -52.49 -0.36 -0.49 16 24 H 0.13 -0.23 8.06 -52.49 -0.42 -0.65 16 25 H 0.13 -0.07 4.87 -52.49 -0.26 -0.33 16 26 H 0.12 0.16 7.82 -51.93 -0.41 -0.25 16 27 H 0.37 -0.94 8.70 45.56 0.40 -0.55 16 28 H 0.05 0.00 5.42 -51.93 -0.28 -0.28 16 29 H 0.06 0.07 6.49 -51.93 -0.34 -0.27 16 30 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 34 H 0.07 -0.11 7.07 -51.93 -0.37 -0.47 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 37 H 0.07 -0.08 6.51 -51.93 -0.34 -0.42 16 38 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 39 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 LS Contribution 317.29 15.07 4.78 4.78 Total: 0.00 -4.38 317.29 -6.02 -10.40 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: -5.30 Total: -7.97 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 1.47 Total: 3.07 kcal Atomic # 8 Polarization: -1.41 SS G_CDS: -0.57 Total: -1.97 kcal Atomic # 14 Polarization: -1.91 SS G_CDS: -6.40 Total: -8.31 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -4.38 -6.02 -10.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11653250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.771 kcal (2) G-P(sol) polarization free energy of solvation -4.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds