Wall clock time and date at job start Mon Mar 8 2021 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32612 * 1 3 3 C 1.47740 * 120.00292 * 2 1 4 4 C 1.39468 * 120.17097 * 243.77494 * 3 2 1 5 5 C 1.37997 * 119.91105 * 179.97438 * 4 3 2 6 6 C 1.38376 * 120.25811 * 359.97438 * 5 4 3 7 7 C 1.38238 * 120.34444 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.95379 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.46859 * 255.00031 * 8 7 6 10 10 Si 1.86298 * 109.46854 * 14.99591 * 8 7 6 11 11 H 1.48505 * 109.47386 * 60.00338 * 10 8 7 12 12 H 1.48503 * 109.47127 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47686 * 300.00000 * 10 8 7 14 14 C 1.38506 * 120.08962 * 359.74263 * 7 6 5 15 15 O 1.35835 * 120.13330 * 180.28440 * 14 7 6 16 16 C 1.42901 * 116.99269 * 266.69906 * 15 14 7 17 17 Si 1.86801 * 119.99875 * 179.97438 * 2 1 3 18 18 C 1.86300 * 109.46940 * 0.02562 * 17 2 1 19 19 C 1.86303 * 109.46825 * 120.00157 * 17 2 1 20 20 C 1.86292 * 109.47588 * 240.00480 * 17 2 1 21 21 H 1.07992 * 120.00573 * 176.89226 * 1 2 3 22 22 H 1.08006 * 119.99739 * 356.62237 * 1 2 3 23 23 H 1.07997 * 120.04152 * 359.95406 * 4 3 2 24 24 H 1.07997 * 119.86981 * 179.97438 * 5 4 3 25 25 H 1.07999 * 119.82322 * 179.97438 * 6 5 4 26 26 H 1.08994 * 109.47087 * 134.99687 * 8 7 6 27 27 H 0.96697 * 114.00125 * 59.99859 * 9 8 7 28 28 H 1.08992 * 109.47087 * 299.99558 * 16 15 14 29 29 H 1.09000 * 109.47556 * 60.00373 * 16 15 14 30 30 H 1.09001 * 109.46472 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.47800 * 59.99496 * 18 17 2 32 32 H 1.08998 * 109.47034 * 179.97438 * 18 17 2 33 33 H 1.09000 * 109.46824 * 299.99466 * 18 17 2 34 34 H 1.09004 * 109.47022 * 60.00379 * 19 17 2 35 35 H 1.08998 * 109.47171 * 180.02562 * 19 17 2 36 36 H 1.08995 * 109.47313 * 300.00497 * 19 17 2 37 37 H 1.09000 * 109.47122 * 59.99955 * 20 17 2 38 38 H 1.08998 * 109.47148 * 180.02562 * 20 17 2 39 39 H 1.09004 * 109.46986 * 300.00065 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0649 1.2794 0.0000 4 6 2.8768 1.6200 -1.0816 5 6 3.5640 2.8167 -1.0762 6 6 3.4505 3.6811 -0.0017 7 6 2.6488 3.3542 1.0760 8 6 2.5311 4.3025 2.2414 9 8 3.2876 3.7983 3.3439 10 14 3.1889 5.9748 1.7500 11 1 2.4028 6.4988 0.6042 12 1 3.0724 6.9094 2.8982 13 1 4.6151 5.8496 1.3558 14 6 1.9489 2.1590 1.0834 15 8 1.1563 1.8395 2.1393 16 6 1.7438 1.0511 3.1762 17 14 2.2601 -1.6178 0.0007 18 6 1.0494 -3.0337 0.0006 19 6 3.3312 -1.7171 -1.5204 20 6 3.3310 -1.7160 1.5219 21 1 -0.5401 -0.9338 -0.0507 22 1 -0.5400 0.9338 0.0551 23 1 2.9678 0.9479 -1.9221 24 1 4.1929 3.0795 -1.9140 25 1 3.9918 4.6156 -0.0046 26 1 1.4843 4.3944 2.5307 27 1 4.2304 3.6907 3.1576 28 1 2.0793 0.0998 2.7634 29 1 2.5952 1.5839 3.5997 30 1 1.0051 0.8686 3.9566 31 1 0.4230 -2.9762 -0.8896 32 1 1.5943 -3.9777 0.0005 33 1 0.4225 -2.9758 0.8904 34 1 4.0395 -0.8886 -1.5207 35 1 3.8758 -2.6612 -1.5203 36 1 2.7046 -1.6596 -2.4104 37 1 2.7044 -1.6579 2.4118 38 1 3.8763 -2.6598 1.5220 39 1 4.0394 -0.8875 1.5216 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_11653250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:20:18 Heat of formation + Delta-G solvation = -61.793401 kcal Electronic energy + Delta-G solvation = -19107.746123 eV Core-core repulsion = 16332.932316 eV Total energy + Delta-G solvation = -2774.813807 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.24072 -38.23237 -37.71040 -34.84458 -32.08081 -30.48274 -29.45873 -28.59278 -28.28853 -27.58233 -26.53179 -24.02929 -22.46452 -20.38671 -18.92762 -18.03873 -17.08569 -16.74111 -16.61905 -15.90032 -15.69717 -15.53945 -14.93392 -14.64516 -14.53168 -14.06696 -13.90817 -13.85953 -13.53640 -13.45289 -13.22956 -13.13653 -13.03314 -12.97407 -12.70148 -12.41233 -12.22719 -12.00270 -11.63775 -11.22793 -11.12086 -10.80531 -10.76500 -10.43279 -10.08355 -9.70862 -9.31941 0.12855 0.18850 1.10898 1.15620 1.39161 1.49995 1.82441 1.87105 1.99326 2.19903 2.48265 2.68457 3.03168 3.51201 3.71911 3.84176 4.07374 4.30459 4.41109 4.48157 4.55057 4.58883 4.63658 4.77302 4.79560 4.81408 4.84070 4.86312 4.87850 4.88300 4.92916 4.97814 5.19585 5.37433 5.47356 5.54193 5.55810 5.63193 5.67332 5.75319 5.88729 6.62428 6.66803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.386 4.386 3 C -0.063 4.063 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.132 4.132 7 C -0.147 4.147 8 C -0.077 4.077 9 O -0.548 6.548 10 Si 0.990 3.010 11 H -0.263 1.263 12 H -0.275 1.275 13 H -0.239 1.239 14 C 0.100 3.900 15 O -0.345 6.345 16 C 0.025 3.975 17 Si 1.097 2.903 18 C -0.458 4.458 19 C -0.457 4.457 20 C -0.461 4.461 21 H 0.122 0.878 22 H 0.076 0.924 23 H 0.148 0.852 24 H 0.152 0.848 25 H 0.138 0.862 26 H 0.106 0.894 27 H 0.386 0.614 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 -2.333 -1.876 3.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.425 4.425 3 C -0.063 4.063 4 C -0.128 4.128 5 C -0.135 4.135 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.187 4.187 9 O -0.354 6.354 10 Si 0.813 3.187 11 H -0.187 1.187 12 H -0.200 1.200 13 H -0.162 1.162 14 C 0.057 3.943 15 O -0.262 6.262 16 C -0.068 4.068 17 Si 1.285 2.715 18 C -0.566 4.566 19 C -0.564 4.564 20 C -0.568 4.568 21 H 0.140 0.860 22 H 0.094 0.906 23 H 0.166 0.834 24 H 0.169 0.831 25 H 0.156 0.844 26 H 0.124 0.876 27 H 0.235 0.765 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.988 -1.391 -1.778 3.009 hybrid contribution 0.155 -0.182 0.061 0.247 sum 2.143 -1.574 -1.717 3.165 Atomic orbital electron populations 1.24356 0.95655 1.01849 0.93851 1.28252 1.01073 1.08154 1.05040 1.19610 0.97737 0.94483 0.94488 1.21524 0.95894 0.97578 0.97828 1.21385 0.99616 0.93805 0.98737 1.21260 0.99019 1.00840 0.93841 1.20703 0.98721 0.97281 0.98056 1.24974 1.01147 1.05209 0.87360 1.86493 1.24706 1.88050 1.36194 0.85147 0.80660 0.74076 0.78811 1.18683 1.20003 1.16229 1.18801 0.93589 0.93010 0.88932 1.85889 1.37640 1.72449 1.30227 1.23290 1.00060 0.94461 0.89024 0.77659 0.65169 0.61702 0.66979 1.26228 1.11605 1.13960 1.04787 1.26228 1.09954 1.04897 1.15340 1.26325 1.10023 1.04630 1.15777 0.86033 0.90586 0.83406 0.83071 0.84406 0.87580 0.76504 0.92452 0.92420 0.88590 0.90714 0.90459 0.91074 0.90936 0.90619 0.90737 0.91251 0.90342 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.20 13.18 66.66 0.88 0.68 16 2 C -0.39 -0.36 3.68 23.62 0.09 -0.27 16 3 C -0.06 -0.24 4.94 -20.03 -0.10 -0.34 16 4 C -0.11 -0.11 9.13 22.51 0.21 0.09 16 5 C -0.12 0.01 10.03 22.25 0.22 0.23 16 6 C -0.13 -0.19 8.65 22.30 0.19 0.00 16 7 C -0.15 -0.64 5.27 -19.80 -0.10 -0.74 16 8 C -0.08 -0.22 2.38 71.24 0.17 -0.05 16 9 O -0.55 -1.28 11.29 -148.98 -1.68 -2.96 16 10 Si 0.99 0.55 25.49 68.60 1.75 2.30 16 11 H -0.26 -0.66 7.11 99.48 0.71 0.05 16 12 H -0.27 -1.07 7.11 99.48 0.71 -0.36 16 13 H -0.24 0.42 6.73 99.48 0.67 1.09 16 14 C 0.10 0.65 5.65 22.77 0.13 0.78 16 15 O -0.34 -2.72 8.86 -91.69 -0.81 -3.53 16 16 C 0.03 0.09 11.07 113.37 1.26 1.34 16 17 Si 1.10 -4.70 12.18 68.60 0.84 -3.87 16 18 C -0.46 1.81 7.87 113.37 0.89 2.70 16 19 C -0.46 1.86 8.11 113.37 0.92 2.78 16 20 C -0.46 1.09 7.84 113.37 0.89 1.98 16 21 H 0.12 -0.31 7.06 -2.91 -0.02 -0.33 16 22 H 0.08 0.39 8.05 -2.91 -0.02 0.37 16 23 H 0.15 -0.43 6.82 -2.91 -0.02 -0.45 16 24 H 0.15 -0.79 8.06 -2.91 -0.02 -0.81 16 25 H 0.14 -0.27 4.87 -2.91 -0.01 -0.29 16 26 H 0.11 0.51 7.82 -2.39 -0.02 0.49 16 27 H 0.39 -1.78 8.70 -74.06 -0.64 -2.42 16 28 H 0.06 0.07 5.42 -2.39 -0.01 0.06 16 29 H 0.06 0.21 6.49 -2.39 -0.02 0.20 16 30 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 32 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 33 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 34 H 0.07 -0.28 7.07 -2.38 -0.02 -0.30 16 35 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 37 H 0.07 -0.14 6.51 -2.39 -0.02 -0.16 16 38 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 39 H 0.06 -0.06 7.96 -2.38 -0.02 -0.08 16 Total: 0.00 -10.57 317.29 6.83 -3.73 By element: Atomic # 1 Polarization: -5.96 SS G_CDS: 1.11 Total: -4.85 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.64 Total: 9.18 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -2.49 Total: -6.49 kcal Atomic # 14 Polarization: -4.15 SS G_CDS: 2.58 Total: -1.57 kcal Total: -10.57 6.83 -3.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11653250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.061 kcal (2) G-P(sol) polarization free energy of solvation -10.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds