Wall clock time and date at job start Mon Mar 8 2021 07:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32603 * 1 3 3 C 1.47754 * 119.99536 * 2 1 4 4 C 1.39676 * 120.28709 * 114.59371 * 3 2 1 5 5 C 1.37970 * 120.05195 * 179.97438 * 4 3 2 6 6 C 1.50693 * 119.80635 * 179.97438 * 5 4 3 7 7 O 1.42906 * 109.47018 * 65.02551 * 6 5 4 8 8 Si 1.86304 * 109.47077 * 185.02284 * 6 5 4 9 9 H 1.48502 * 109.47104 * 60.00445 * 8 6 5 10 10 H 1.48499 * 109.47176 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47047 * 300.00057 * 8 6 5 12 12 C 1.38459 * 120.38351 * 0.02562 * 5 4 3 13 13 C 1.38544 * 120.01697 * 359.97438 * 12 5 4 14 14 C 1.38558 * 120.16105 * 0.04103 * 13 12 5 15 15 O 1.36369 * 119.68025 * 179.85214 * 14 13 12 16 16 C 1.42914 * 115.93108 * 68.41062 * 15 14 13 17 17 C 1.52079 * 110.75020 * 275.61229 * 16 15 14 18 18 C 1.52072 * 112.35241 * 64.73293 * 17 16 15 19 19 O 1.36501 * 120.27108 * 179.76525 * 13 12 5 20 20 Si 1.86802 * 120.00306 * 179.97438 * 2 1 3 21 21 C 1.86296 * 109.47033 * 275.08006 * 20 2 1 22 22 C 1.86298 * 109.46924 * 35.08400 * 20 2 1 23 23 C 1.86302 * 109.46873 * 155.07947 * 20 2 1 24 24 H 1.08006 * 119.99820 * 185.02358 * 1 2 3 25 25 H 1.08004 * 120.00484 * 5.02424 * 1 2 3 26 26 H 1.07998 * 119.97563 * 359.97438 * 4 3 2 27 27 H 1.08993 * 109.47448 * 305.02468 * 6 5 4 28 28 H 0.96700 * 113.99810 * 60.00113 * 7 6 5 29 29 H 1.07999 * 119.98810 * 180.02562 * 12 5 4 30 30 H 1.09002 * 109.22055 * 35.93183 * 16 15 14 31 31 H 1.08999 * 109.22620 * 155.32651 * 16 15 14 32 32 H 1.09001 * 108.90572 * 185.47528 * 17 16 15 33 33 H 1.09001 * 108.89942 * 304.09010 * 17 16 15 34 34 H 1.08994 * 109.21775 * 55.53733 * 18 17 16 35 35 H 1.09004 * 109.20921 * 174.86706 * 18 17 16 36 36 H 1.09003 * 109.46939 * 60.00400 * 21 20 2 37 37 H 1.09004 * 109.46815 * 179.97438 * 21 20 2 38 38 H 1.08997 * 109.47651 * 300.00226 * 21 20 2 39 39 H 1.08995 * 109.47531 * 59.99988 * 22 20 2 40 40 H 1.09004 * 109.46794 * 180.02562 * 22 20 2 41 41 H 1.09003 * 109.47318 * 299.99765 * 22 20 2 42 42 H 1.09003 * 109.46691 * 55.06820 * 23 20 2 43 43 H 1.09002 * 109.46681 * 175.06005 * 23 20 2 44 44 H 1.08993 * 109.47187 * 295.06331 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0647 1.2796 0.0000 4 6 2.8516 1.6388 1.0967 5 6 3.5397 2.8346 1.0913 6 6 4.3866 3.2168 2.2777 7 8 5.4723 2.2963 2.4043 8 14 5.0569 4.9379 2.0336 9 1 3.9287 5.8945 1.9021 10 1 5.8920 5.3143 3.2024 11 1 5.8848 4.9764 0.8014 12 6 3.4558 3.6860 0.0026 13 6 2.6781 3.3391 -1.0901 14 6 1.9819 2.1412 -1.0970 15 8 1.2169 1.8109 -2.1765 16 6 1.9284 1.5215 -3.3816 17 6 2.2479 2.8010 -4.1391 18 6 3.1996 3.7052 -3.3716 19 8 2.5878 4.1767 -2.1642 20 14 2.2601 -1.6177 0.0007 21 6 2.4359 -2.2324 1.7505 22 6 1.3259 -2.8746 -1.0083 23 6 3.9501 -1.3592 -0.7395 24 1 -0.5400 -0.9318 0.0819 25 1 -0.5401 0.9317 -0.0819 26 1 2.9215 0.9799 1.9496 27 1 3.7790 3.1885 3.1821 28 1 6.0562 2.2686 1.6340 29 1 3.9975 4.6203 0.0050 30 1 2.8582 1.0089 -3.1351 31 1 1.3183 0.8748 -4.0122 32 1 2.7016 2.5412 -5.0956 33 1 1.3203 3.3427 -4.3242 34 1 4.1031 3.1478 -3.1245 35 1 3.4649 4.5587 -3.9954 36 1 1.4471 -2.3837 2.1835 37 1 2.9806 -3.1766 1.7509 38 1 2.9825 -1.4971 2.3409 39 1 1.2230 -2.5149 -2.0320 40 1 1.8708 -3.8187 -1.0075 41 1 0.3371 -3.0259 -0.5753 42 1 4.4637 -0.5615 -0.2027 43 1 4.5266 -2.2808 -0.6594 44 1 3.8488 -1.0841 -1.7893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_11771128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:25:00 Heat of formation + Delta-G solvation = -106.719366 kcal Electronic energy + Delta-G solvation = -24771.541432 eV Core-core repulsion = 21392.333538 eV Total energy + Delta-G solvation = -3379.207895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90956 -39.41333 -38.49700 -37.36187 -34.67770 -33.93365 -30.89225 -30.51354 -29.54925 -28.41913 -28.38764 -27.72900 -26.20495 -24.31413 -22.76913 -22.43736 -20.42239 -19.19644 -18.43952 -18.16003 -17.20529 -16.56861 -16.43904 -16.28021 -16.09998 -15.67935 -15.51689 -15.05439 -14.93501 -14.51339 -14.23437 -14.20142 -14.02997 -14.00402 -13.72423 -13.41007 -13.32865 -13.26162 -13.10984 -12.99261 -12.71738 -12.59494 -12.21218 -12.14211 -11.93307 -11.71779 -11.42243 -11.28407 -11.16194 -10.90873 -10.81293 -10.42070 -10.16680 -9.45291 -9.34800 0.01257 0.10554 1.06653 1.14228 1.41507 1.52338 1.70859 1.84941 1.90784 2.09086 2.28314 2.48623 2.59541 2.86972 3.44128 3.61195 3.63440 3.72708 3.77866 4.08044 4.13509 4.20772 4.25438 4.31354 4.35411 4.46186 4.59229 4.67163 4.68322 4.70878 4.72805 4.73457 4.75673 4.76866 4.77748 4.92636 4.98439 5.06171 5.19154 5.36531 5.42481 5.44186 5.50461 5.55149 5.62079 5.82309 6.14454 6.50470 6.60678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.375 4.375 3 C -0.024 4.024 4 C -0.084 4.084 5 C -0.108 4.108 6 C -0.077 4.077 7 O -0.536 6.536 8 Si 0.944 3.056 9 H -0.248 1.248 10 H -0.252 1.252 11 H -0.252 1.252 12 C -0.134 4.134 13 C 0.075 3.925 14 C 0.071 3.929 15 O -0.310 6.310 16 C 0.058 3.942 17 C -0.188 4.188 18 C 0.058 3.942 19 O -0.319 6.319 20 Si 1.048 2.952 21 C -0.447 4.447 22 C -0.448 4.448 23 C -0.445 4.445 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.139 0.861 27 H 0.122 0.878 28 H 0.376 0.624 29 H 0.131 0.869 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 -2.295 -1.890 3.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.416 4.416 3 C -0.025 4.025 4 C -0.102 4.102 5 C -0.109 4.109 6 C -0.188 4.188 7 O -0.340 6.340 8 Si 0.767 3.233 9 H -0.172 1.172 10 H -0.176 1.176 11 H -0.175 1.175 12 C -0.152 4.152 13 C 0.031 3.969 14 C 0.027 3.973 15 O -0.226 6.226 16 C -0.017 4.017 17 C -0.226 4.226 18 C -0.016 4.016 19 O -0.236 6.236 20 Si 1.240 2.760 21 C -0.555 4.555 22 C -0.556 4.556 23 C -0.553 4.553 24 H 0.122 0.878 25 H 0.114 0.886 26 H 0.157 0.843 27 H 0.140 0.860 28 H 0.223 0.777 29 H 0.148 0.852 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.445 -1.324 -1.466 2.448 hybrid contribution 0.099 -0.175 -0.840 0.864 sum 1.544 -1.499 -2.306 3.155 Atomic orbital electron populations 1.24237 0.95359 1.01878 0.92850 1.27748 1.00922 1.07075 1.05888 1.19003 0.96879 0.93186 0.93413 1.21020 0.95295 0.96238 0.97681 1.20091 0.99746 0.95311 0.95704 1.24944 0.90348 1.04476 0.99018 1.86530 1.39564 1.63425 1.44526 0.85753 0.81159 0.75471 0.80935 1.17156 1.17578 1.17535 1.20975 0.99589 1.00601 0.94011 1.18952 0.97622 0.90567 0.89779 1.19226 0.95644 0.92520 0.89916 1.86368 1.31581 1.87509 1.17156 1.22660 0.97639 0.96122 0.85240 1.22479 1.02214 0.97625 1.00255 1.22738 0.94457 0.99440 0.84993 1.86516 1.76881 1.42335 1.17843 0.78370 0.66218 0.63504 0.67934 1.26106 1.04746 1.06220 1.18380 1.26136 1.08542 1.11613 1.09268 1.26078 1.17614 1.04929 1.06688 0.87768 0.88645 0.84318 0.86040 0.77676 0.85169 0.92363 0.87744 0.89008 0.89676 0.92283 0.87687 0.91131 0.91044 0.90925 0.91151 0.90922 0.91122 0.90956 0.90992 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.04 13.29 28.83 0.38 0.35 16 2 C -0.38 -0.10 3.85 -37.60 -0.14 -0.24 16 3 C -0.02 -0.04 4.91 -104.91 -0.52 -0.56 16 4 C -0.08 -0.08 9.05 -39.14 -0.35 -0.44 16 5 C -0.11 -0.10 5.35 -104.64 -0.56 -0.66 16 6 C -0.08 0.03 2.79 36.00 0.10 0.13 16 7 O -0.54 0.14 12.83 -35.23 -0.45 -0.31 16 8 Si 0.94 -0.12 25.12 -169.99 -4.27 -4.39 16 9 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 10 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 11 H -0.25 0.01 7.04 56.52 0.40 0.41 16 12 C -0.13 -0.27 8.61 -39.39 -0.34 -0.61 16 13 C 0.07 0.25 5.71 -39.35 -0.22 0.03 16 14 C 0.07 0.22 5.69 -38.91 -0.22 0.00 16 15 O -0.31 -0.95 9.36 -36.46 -0.34 -1.29 16 16 C 0.06 0.00 6.51 36.69 0.24 0.24 16 17 C -0.19 0.14 5.93 -27.67 -0.16 -0.02 16 18 C 0.06 0.01 6.52 36.68 0.24 0.25 16 19 O -0.32 -1.16 10.20 -36.90 -0.38 -1.54 16 20 Si 1.05 -2.02 12.10 -169.99 -2.06 -4.08 16 21 C -0.45 0.60 8.65 101.05 0.87 1.47 16 22 C -0.45 0.67 8.65 101.05 0.87 1.55 16 23 C -0.45 0.54 8.65 101.05 0.87 1.41 16 24 H 0.10 -0.17 7.59 -52.48 -0.40 -0.57 16 25 H 0.10 0.15 8.05 -52.48 -0.42 -0.27 16 26 H 0.14 -0.05 8.06 -52.49 -0.42 -0.47 16 27 H 0.12 -0.17 7.96 -51.93 -0.41 -0.58 16 28 H 0.38 -1.27 8.70 45.56 0.40 -0.87 16 29 H 0.13 0.15 4.84 -52.49 -0.25 -0.11 16 30 H 0.06 -0.05 7.93 -51.93 -0.41 -0.46 16 31 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 32 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 33 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 34 H 0.06 -0.04 7.93 -51.93 -0.41 -0.46 16 35 H 0.11 -0.17 8.14 -51.93 -0.42 -0.59 16 36 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 40 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 41 H 0.07 -0.12 7.83 -51.93 -0.41 -0.52 16 42 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 43 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 44 H 0.06 -0.07 7.96 -51.93 -0.41 -0.49 16 LS Contribution 360.19 15.07 5.43 5.43 Total: 0.00 -5.66 360.19 -7.55 -13.21 By element: Atomic # 1 Polarization: -3.39 SS G_CDS: -6.54 Total: -9.93 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 1.06 Total: 2.90 kcal Atomic # 8 Polarization: -1.97 SS G_CDS: -1.17 Total: -3.14 kcal Atomic # 14 Polarization: -2.14 SS G_CDS: -6.33 Total: -8.47 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -5.66 -7.55 -13.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11771128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.505 kcal (2) G-P(sol) polarization free energy of solvation -5.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds