Wall clock time and date at job start Mon Mar 8 2021 07:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32603 * 1 3 3 C 1.47754 * 119.99536 * 2 1 4 4 C 1.39676 * 120.28709 * 114.59371 * 3 2 1 5 5 C 1.37970 * 120.05195 * 179.97438 * 4 3 2 6 6 C 1.50693 * 119.80635 * 179.97438 * 5 4 3 7 7 O 1.42906 * 109.47018 * 65.02551 * 6 5 4 8 8 Si 1.86304 * 109.47077 * 185.02284 * 6 5 4 9 9 H 1.48502 * 109.47104 * 60.00445 * 8 6 5 10 10 H 1.48499 * 109.47176 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47047 * 300.00057 * 8 6 5 12 12 C 1.38459 * 120.38351 * 0.02562 * 5 4 3 13 13 C 1.38544 * 120.01697 * 359.97438 * 12 5 4 14 14 C 1.38558 * 120.16105 * 0.04103 * 13 12 5 15 15 O 1.36369 * 119.68025 * 179.85214 * 14 13 12 16 16 C 1.42914 * 115.93108 * 68.41062 * 15 14 13 17 17 C 1.52079 * 110.75020 * 275.61229 * 16 15 14 18 18 C 1.52072 * 112.35241 * 64.73293 * 17 16 15 19 19 O 1.36501 * 120.27108 * 179.76525 * 13 12 5 20 20 Si 1.86802 * 120.00306 * 179.97438 * 2 1 3 21 21 C 1.86296 * 109.47033 * 275.08006 * 20 2 1 22 22 C 1.86298 * 109.46924 * 35.08400 * 20 2 1 23 23 C 1.86302 * 109.46873 * 155.07947 * 20 2 1 24 24 H 1.08006 * 119.99820 * 185.02358 * 1 2 3 25 25 H 1.08004 * 120.00484 * 5.02424 * 1 2 3 26 26 H 1.07998 * 119.97563 * 359.97438 * 4 3 2 27 27 H 1.08993 * 109.47448 * 305.02468 * 6 5 4 28 28 H 0.96700 * 113.99810 * 60.00113 * 7 6 5 29 29 H 1.07999 * 119.98810 * 180.02562 * 12 5 4 30 30 H 1.09002 * 109.22055 * 35.93183 * 16 15 14 31 31 H 1.08999 * 109.22620 * 155.32651 * 16 15 14 32 32 H 1.09001 * 108.90572 * 185.47528 * 17 16 15 33 33 H 1.09001 * 108.89942 * 304.09010 * 17 16 15 34 34 H 1.08994 * 109.21775 * 55.53733 * 18 17 16 35 35 H 1.09004 * 109.20921 * 174.86706 * 18 17 16 36 36 H 1.09003 * 109.46939 * 60.00400 * 21 20 2 37 37 H 1.09004 * 109.46815 * 179.97438 * 21 20 2 38 38 H 1.08997 * 109.47651 * 300.00226 * 21 20 2 39 39 H 1.08995 * 109.47531 * 59.99988 * 22 20 2 40 40 H 1.09004 * 109.46794 * 180.02562 * 22 20 2 41 41 H 1.09003 * 109.47318 * 299.99765 * 22 20 2 42 42 H 1.09003 * 109.46691 * 55.06820 * 23 20 2 43 43 H 1.09002 * 109.46681 * 175.06005 * 23 20 2 44 44 H 1.08993 * 109.47187 * 295.06331 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0647 1.2796 0.0000 4 6 2.8516 1.6388 1.0967 5 6 3.5397 2.8346 1.0913 6 6 4.3866 3.2168 2.2777 7 8 5.4723 2.2963 2.4043 8 14 5.0569 4.9379 2.0336 9 1 3.9287 5.8945 1.9021 10 1 5.8920 5.3143 3.2024 11 1 5.8848 4.9764 0.8014 12 6 3.4558 3.6860 0.0026 13 6 2.6781 3.3391 -1.0901 14 6 1.9819 2.1412 -1.0970 15 8 1.2169 1.8109 -2.1765 16 6 1.9284 1.5215 -3.3816 17 6 2.2479 2.8010 -4.1391 18 6 3.1996 3.7052 -3.3716 19 8 2.5878 4.1767 -2.1642 20 14 2.2601 -1.6177 0.0007 21 6 2.4359 -2.2324 1.7505 22 6 1.3259 -2.8746 -1.0083 23 6 3.9501 -1.3592 -0.7395 24 1 -0.5400 -0.9318 0.0819 25 1 -0.5401 0.9317 -0.0819 26 1 2.9215 0.9799 1.9496 27 1 3.7790 3.1885 3.1821 28 1 6.0562 2.2686 1.6340 29 1 3.9975 4.6203 0.0050 30 1 2.8582 1.0089 -3.1351 31 1 1.3183 0.8748 -4.0122 32 1 2.7016 2.5412 -5.0956 33 1 1.3203 3.3427 -4.3242 34 1 4.1031 3.1478 -3.1245 35 1 3.4649 4.5587 -3.9954 36 1 1.4471 -2.3837 2.1835 37 1 2.9806 -3.1766 1.7509 38 1 2.9825 -1.4971 2.3409 39 1 1.2230 -2.5149 -2.0320 40 1 1.8708 -3.8187 -1.0075 41 1 0.3371 -3.0259 -0.5753 42 1 4.4637 -0.5615 -0.2027 43 1 4.5266 -2.2808 -0.6594 44 1 3.8488 -1.0841 -1.7893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_11771128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:24:59 Heat of formation + Delta-G solvation = -99.242466 kcal Electronic energy + Delta-G solvation = -24771.217209 eV Core-core repulsion = 21392.333538 eV Total energy + Delta-G solvation = -3378.883672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.99559 -39.45668 -38.60973 -37.35412 -34.70175 -33.93251 -30.93596 -30.58820 -29.41316 -28.27550 -28.26150 -27.73385 -26.23155 -24.37439 -22.78232 -22.49459 -20.45153 -19.26771 -18.46088 -18.23841 -17.23289 -16.61804 -16.49473 -16.30484 -16.09432 -15.69579 -15.55443 -15.10886 -14.95945 -14.51430 -14.19464 -14.08489 -13.97011 -13.88535 -13.64903 -13.37237 -13.19267 -13.14467 -12.99000 -12.95761 -12.72533 -12.59480 -12.25513 -12.18563 -11.91473 -11.74495 -11.44492 -11.22950 -11.18204 -10.80795 -10.77588 -10.41838 -10.14609 -9.55268 -9.42549 -0.07456 0.00553 1.08427 1.15395 1.39622 1.49532 1.79876 1.87479 2.00737 2.19364 2.28327 2.43439 2.69029 2.78488 3.51773 3.59629 3.65958 3.72548 3.79417 4.08726 4.14109 4.16775 4.28216 4.30532 4.35527 4.48135 4.65663 4.74520 4.75918 4.82149 4.82667 4.85510 4.86458 4.90611 4.90882 4.95537 4.98156 5.02296 5.12172 5.28020 5.40117 5.54250 5.57569 5.66673 5.69778 5.83534 6.07909 6.50794 6.69504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.385 4.385 3 C -0.030 4.030 4 C -0.088 4.088 5 C -0.104 4.104 6 C -0.069 4.069 7 O -0.544 6.544 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.266 1.266 11 H -0.253 1.253 12 C -0.145 4.145 13 C 0.058 3.942 14 C 0.056 3.944 15 O -0.329 6.329 16 C 0.049 3.951 17 C -0.184 4.184 18 C 0.050 3.950 19 O -0.344 6.344 20 Si 1.104 2.896 21 C -0.457 4.457 22 C -0.458 4.458 23 C -0.457 4.457 24 H 0.125 0.875 25 H 0.075 0.925 26 H 0.154 0.846 27 H 0.133 0.867 28 H 0.389 0.611 29 H 0.134 0.866 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.228 -3.492 -1.900 4.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.424 4.424 3 C -0.030 4.030 4 C -0.106 4.106 5 C -0.104 4.104 6 C -0.180 4.180 7 O -0.351 6.351 8 Si 0.795 3.205 9 H -0.192 1.192 10 H -0.191 1.191 11 H -0.177 1.177 12 C -0.163 4.163 13 C 0.014 3.986 14 C 0.012 3.988 15 O -0.246 6.246 16 C -0.025 4.025 17 C -0.221 4.221 18 C -0.024 4.024 19 O -0.261 6.261 20 Si 1.291 2.709 21 C -0.564 4.564 22 C -0.565 4.565 23 C -0.564 4.564 24 H 0.143 0.857 25 H 0.094 0.906 26 H 0.171 0.829 27 H 0.151 0.849 28 H 0.238 0.762 29 H 0.151 0.849 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.958 -2.509 -1.494 3.516 hybrid contribution -0.048 0.233 -0.877 0.909 sum 1.910 -2.276 -2.371 3.801 Atomic orbital electron populations 1.24326 0.95542 1.01962 0.93365 1.28268 1.01107 1.07629 1.05378 1.19246 0.96951 0.93646 0.93184 1.21225 0.94998 0.96461 0.97881 1.20227 0.99530 0.95027 0.95665 1.24881 0.90292 1.03918 0.98901 1.86503 1.39719 1.63271 1.45569 0.85399 0.79944 0.75194 0.79998 1.19153 1.19122 1.17689 1.21099 0.99927 1.01060 0.94203 1.19186 0.98360 0.90877 0.90192 1.19408 0.96030 0.92885 0.90508 1.86325 1.32621 1.87654 1.18008 1.22903 0.98175 0.96837 0.84584 1.22464 1.01560 0.96961 1.01148 1.22990 0.94812 1.00420 0.84211 1.86461 1.77518 1.43240 1.18893 0.77561 0.64760 0.61462 0.67081 1.26210 1.04920 1.06467 1.18791 1.26236 1.08949 1.12010 1.09305 1.26214 1.18436 1.05050 1.06682 0.85728 0.90624 0.82875 0.84912 0.76159 0.84876 0.91667 0.86242 0.86367 0.91040 0.91567 0.86241 0.90985 0.90648 0.91016 0.91343 0.90482 0.90789 0.91364 0.90452 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.14 13.29 66.66 0.89 0.75 16 2 C -0.39 -0.28 3.85 23.63 0.09 -0.19 16 3 C -0.03 -0.12 4.91 -20.05 -0.10 -0.22 16 4 C -0.09 -0.19 9.05 22.55 0.20 0.02 16 5 C -0.10 -0.22 5.35 -19.88 -0.11 -0.33 16 6 C -0.07 0.07 2.79 71.23 0.20 0.27 16 7 O -0.54 0.66 12.83 -148.98 -1.91 -1.25 16 8 Si 0.97 0.25 25.12 68.60 1.72 1.98 16 9 H -0.27 -0.87 7.11 99.48 0.71 -0.16 16 10 H -0.27 -0.69 7.11 99.48 0.71 0.01 16 11 H -0.25 -0.07 7.04 99.48 0.70 0.63 16 12 C -0.14 -0.75 8.61 22.40 0.19 -0.55 16 13 C 0.06 0.47 5.71 22.42 0.13 0.60 16 14 C 0.06 0.41 5.69 22.71 0.13 0.54 16 15 O -0.33 -2.43 9.36 -82.93 -0.78 -3.20 16 16 C 0.05 0.02 6.51 71.68 0.47 0.49 16 17 C -0.18 0.23 5.93 29.98 0.18 0.41 16 18 C 0.05 0.05 6.52 71.68 0.47 0.51 16 19 O -0.34 -3.04 10.20 -84.47 -0.86 -3.90 16 20 Si 1.10 -4.98 12.10 68.60 0.83 -4.15 16 21 C -0.46 1.66 8.65 113.37 0.98 2.64 16 22 C -0.46 1.78 8.65 113.37 0.98 2.76 16 23 C -0.46 1.34 8.65 113.37 0.98 2.32 16 24 H 0.12 -0.45 7.59 -2.91 -0.02 -0.47 16 25 H 0.08 0.37 8.05 -2.91 -0.02 0.35 16 26 H 0.15 -0.20 8.06 -2.91 -0.02 -0.22 16 27 H 0.13 -0.44 7.96 -2.39 -0.02 -0.46 16 28 H 0.39 -2.87 8.70 -74.06 -0.64 -3.51 16 29 H 0.13 0.47 4.84 -2.91 -0.01 0.46 16 30 H 0.06 -0.09 7.93 -2.39 -0.02 -0.11 16 31 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.12 -0.82 8.14 -2.39 -0.02 -0.84 16 33 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.07 -0.06 7.93 -2.39 -0.02 -0.08 16 35 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.07 -0.27 7.96 -2.39 -0.02 -0.28 16 37 H 0.07 -0.32 7.96 -2.39 -0.02 -0.33 16 38 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 39 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 40 H 0.08 -0.35 7.96 -2.38 -0.02 -0.37 16 41 H 0.07 -0.32 7.83 -2.39 -0.02 -0.34 16 42 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 43 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 44 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 Total: 0.00 -13.84 360.19 5.76 -8.08 By element: Atomic # 1 Polarization: -8.65 SS G_CDS: 1.08 Total: -7.57 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 5.68 Total: 10.01 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -3.55 Total: -8.35 kcal Atomic # 14 Polarization: -4.72 SS G_CDS: 2.55 Total: -2.17 kcal Total: -13.84 5.76 -8.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_11771128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.167 kcal (2) G-P(sol) polarization free energy of solvation -13.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds