Wall clock time and date at job start Mon Mar 8 2021 07:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32557 * 1 3 3 C 1.47820 * 119.99837 * 2 1 4 4 C 1.39512 * 120.14183 * 133.19554 * 3 2 1 5 5 C 1.37990 * 119.85935 * 179.76590 * 4 3 2 6 6 C 1.38328 * 120.13668 * 0.51408 * 5 4 3 7 7 C 1.38359 * 120.28717 * 359.73915 * 6 5 4 8 8 C 1.50702 * 119.92902 * 179.97438 * 7 6 5 9 9 O 1.42903 * 109.47329 * 245.02530 * 8 7 6 10 10 Si 1.86297 * 109.47225 * 5.02335 * 8 7 6 11 11 H 1.48505 * 109.46926 * 59.99575 * 10 8 7 12 12 H 1.48493 * 109.47295 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47244 * 300.00147 * 10 8 7 14 14 C 1.37952 * 120.14409 * 0.02562 * 7 6 5 15 15 Si 1.86800 * 120.00179 * 179.72594 * 2 1 3 16 16 C 1.86296 * 109.47211 * 273.44811 * 15 2 1 17 17 C 1.86299 * 109.46965 * 33.45031 * 15 2 1 18 18 C 1.86305 * 109.47050 * 153.44923 * 15 2 1 19 19 H 1.08003 * 119.99989 * 180.02562 * 1 2 3 20 20 H 1.07997 * 120.00543 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.06936 * 0.02562 * 4 3 2 22 22 H 1.07997 * 119.93595 * 180.24975 * 5 4 3 23 23 H 1.08003 * 119.85476 * 179.75979 * 6 5 4 24 24 H 1.09007 * 109.46864 * 125.02535 * 8 7 6 25 25 H 0.96695 * 114.00030 * 59.99972 * 9 8 7 26 26 H 1.07995 * 120.07393 * 180.02562 * 14 7 6 27 27 H 1.08996 * 109.46911 * 60.00002 * 16 15 2 28 28 H 1.08997 * 109.47142 * 179.97438 * 16 15 2 29 29 H 1.09000 * 109.47211 * 300.00002 * 16 15 2 30 30 H 1.09004 * 109.47016 * 60.00387 * 17 15 2 31 31 H 1.09002 * 109.47115 * 179.97438 * 17 15 2 32 32 H 1.08996 * 109.47128 * 299.99981 * 17 15 2 33 33 H 1.09002 * 109.47169 * 65.84407 * 18 15 2 34 34 H 1.09000 * 109.46991 * 185.83974 * 18 15 2 35 35 H 1.08996 * 109.47185 * 305.84080 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0646 1.2802 0.0000 4 6 3.1301 1.4740 0.8796 5 6 3.8191 2.6696 0.8712 6 6 3.4485 3.6786 0.0007 7 6 2.3894 3.4947 -0.8705 8 6 1.9922 4.5997 -1.8151 9 8 0.6826 5.0639 -1.4814 10 14 3.2052 6.0063 -1.6705 11 1 4.5662 5.5239 -2.0172 12 1 2.8142 7.0948 -2.6017 13 1 3.2024 6.5210 -0.2776 14 6 1.6956 2.3024 -0.8755 15 14 2.2596 -1.6177 0.0077 16 6 2.4787 -2.1999 1.7638 17 6 1.3010 -2.8929 -0.9544 18 6 3.9309 -1.3736 -0.7786 19 1 -0.5400 -0.9353 0.0004 20 1 -0.5401 0.9352 0.0004 21 1 3.4177 0.6884 1.5626 22 1 4.6466 2.8194 1.5488 23 1 3.9884 4.6140 0.0007 24 1 1.9942 4.2218 -2.8376 25 1 0.6066 5.4150 -0.5837 26 1 0.8694 2.1599 -1.5562 27 1 1.5009 -2.3427 2.2238 28 1 3.0233 -3.1441 1.7682 29 1 3.0396 -1.4538 2.3267 30 1 1.1729 -2.5522 -1.9818 31 1 1.8462 -3.8367 -0.9502 32 1 0.3232 -3.0357 -0.4943 33 1 4.5301 -0.7066 -0.1587 34 1 4.4343 -2.3362 -0.8683 35 1 3.8060 -0.9351 -1.7686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12175802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:28:06 Heat of formation + Delta-G solvation = -40.314458 kcal Electronic energy + Delta-G solvation = -14642.355698 eV Core-core repulsion = 12342.693099 eV Total energy + Delta-G solvation = -2299.662599 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 236.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.50799 -37.67564 -34.96353 -32.42059 -30.55380 -29.54803 -28.44931 -28.33121 -26.68383 -24.27847 -22.43093 -20.21400 -18.45239 -17.34632 -16.61236 -16.32703 -15.97694 -15.23731 -14.97129 -14.79032 -14.33762 -14.19794 -13.97534 -13.87440 -13.51181 -13.37865 -13.23511 -13.17866 -13.05955 -12.94098 -12.39716 -12.19630 -11.94466 -11.59808 -11.34889 -10.99465 -10.89251 -10.50371 -10.28925 -9.76739 -9.25312 0.13742 0.43530 1.14288 1.19564 1.43141 1.52109 1.72222 1.85260 1.91355 2.09926 2.53600 2.89426 3.48327 3.73784 3.86832 4.03696 4.13884 4.40534 4.55870 4.64704 4.67348 4.68674 4.71996 4.72756 4.77344 4.78712 4.81118 4.95329 5.08065 5.27092 5.42219 5.47595 5.52463 5.54265 5.56684 5.62838 5.80867 6.08240 6.54501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.374 4.374 3 C -0.031 4.031 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.134 4.134 7 C -0.117 4.117 8 C -0.081 4.081 9 O -0.539 6.539 10 Si 0.951 3.049 11 H -0.250 1.250 12 H -0.255 1.255 13 H -0.252 1.252 14 C -0.089 4.089 15 Si 1.049 2.951 16 C -0.448 4.448 17 C -0.449 4.449 18 C -0.446 4.446 19 H 0.105 0.895 20 H 0.095 0.905 21 H 0.126 0.874 22 H 0.126 0.874 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.376 0.624 26 H 0.126 0.874 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 -1.354 1.070 1.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.415 4.415 3 C -0.031 4.031 4 C -0.132 4.132 5 C -0.127 4.127 6 C -0.152 4.152 7 C -0.118 4.118 8 C -0.192 4.192 9 O -0.344 6.344 10 Si 0.774 3.226 11 H -0.174 1.174 12 H -0.179 1.179 13 H -0.176 1.176 14 C -0.107 4.107 15 Si 1.240 2.760 16 C -0.555 4.555 17 C -0.557 4.557 18 C -0.554 4.554 19 H 0.123 0.877 20 H 0.113 0.887 21 H 0.144 0.856 22 H 0.144 0.856 23 H 0.136 0.864 24 H 0.135 0.865 25 H 0.223 0.777 26 H 0.143 0.857 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.130 -0.796 0.528 1.480 hybrid contribution -0.235 -0.066 0.547 0.599 sum 0.895 -0.863 1.074 1.643 Atomic orbital electron populations 1.24304 0.95536 1.01954 0.94533 1.28006 1.01025 1.08139 1.04354 1.19019 0.95295 0.93353 0.95456 1.21276 0.95442 0.97716 0.98800 1.21021 0.99701 0.93337 0.98683 1.21065 0.97680 0.99439 0.96978 1.20220 0.96925 0.96430 0.98193 1.24992 0.92430 1.01057 1.00690 1.86515 1.28529 1.82867 1.36452 0.85662 0.78006 0.77771 0.81150 1.17404 1.17900 1.17627 1.21152 0.99005 0.91629 0.98902 0.78356 0.66437 0.63491 0.67668 1.26136 1.04806 1.06020 1.18575 1.26141 1.08701 1.11896 1.08951 1.26111 1.17093 1.04643 1.07567 0.87733 0.88698 0.85627 0.85604 0.86413 0.86535 0.77714 0.85652 0.91127 0.90972 0.91202 0.91025 0.90898 0.91183 0.91069 0.91181 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.06 13.31 28.82 0.38 0.44 16 2 C -0.37 0.07 4.41 -37.57 -0.17 -0.09 16 3 C -0.03 -0.04 5.26 -105.01 -0.55 -0.59 16 4 C -0.11 -0.07 8.66 -39.20 -0.34 -0.41 16 5 C -0.11 -0.06 10.03 -39.64 -0.40 -0.46 16 6 C -0.13 -0.13 8.66 -39.50 -0.34 -0.47 16 7 C -0.12 -0.14 5.35 -104.68 -0.56 -0.70 16 8 C -0.08 -0.02 2.80 36.01 0.10 0.08 16 9 O -0.54 -0.51 12.83 -35.23 -0.45 -0.96 16 10 Si 0.95 -0.03 25.13 -169.99 -4.27 -4.30 16 11 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 12 H -0.25 -0.35 7.11 56.52 0.40 0.06 16 13 H -0.25 -0.02 7.04 56.52 0.40 0.38 16 14 C -0.09 -0.15 8.96 -39.20 -0.35 -0.50 16 15 Si 1.05 -2.13 11.16 -169.99 -1.90 -4.03 16 16 C -0.45 0.68 8.65 101.05 0.87 1.55 16 17 C -0.45 0.66 8.56 101.05 0.87 1.53 16 18 C -0.45 0.40 8.63 101.05 0.87 1.27 16 19 H 0.10 -0.22 7.37 -52.48 -0.39 -0.61 16 20 H 0.09 -0.01 7.84 -52.49 -0.41 -0.42 16 21 H 0.13 -0.15 6.98 -52.48 -0.37 -0.52 16 22 H 0.13 -0.17 8.06 -52.49 -0.42 -0.60 16 23 H 0.12 -0.03 4.84 -52.48 -0.25 -0.28 16 24 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 25 H 0.38 -0.80 8.70 45.56 0.40 -0.41 16 26 H 0.13 0.17 7.94 -52.49 -0.42 -0.25 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.11 7.61 -51.93 -0.40 -0.50 16 30 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 33 H 0.07 -0.05 7.48 -51.93 -0.39 -0.44 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 35 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 LS Contribution 293.92 15.07 4.43 4.43 Total: 0.00 -4.00 293.92 -6.54 -10.54 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: -4.74 Total: -7.32 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 0.39 Total: 1.64 kcal Atomic # 8 Polarization: -0.51 SS G_CDS: -0.45 Total: -0.96 kcal Atomic # 14 Polarization: -2.16 SS G_CDS: -6.17 Total: -8.33 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -4.00 -6.54 -10.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12175802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.775 kcal (2) G-P(sol) polarization free energy of solvation -3.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds