Wall clock time and date at job start Mon Mar 8 2021 07:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32557 * 1 3 3 C 1.47820 * 119.99837 * 2 1 4 4 C 1.39512 * 120.14183 * 133.19554 * 3 2 1 5 5 C 1.37990 * 119.85935 * 179.76590 * 4 3 2 6 6 C 1.38328 * 120.13668 * 0.51408 * 5 4 3 7 7 C 1.38359 * 120.28717 * 359.73915 * 6 5 4 8 8 C 1.50702 * 119.92902 * 179.97438 * 7 6 5 9 9 O 1.42903 * 109.47329 * 245.02530 * 8 7 6 10 10 Si 1.86297 * 109.47225 * 5.02335 * 8 7 6 11 11 H 1.48505 * 109.46926 * 59.99575 * 10 8 7 12 12 H 1.48493 * 109.47295 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47244 * 300.00147 * 10 8 7 14 14 C 1.37952 * 120.14409 * 0.02562 * 7 6 5 15 15 Si 1.86800 * 120.00179 * 179.72594 * 2 1 3 16 16 C 1.86296 * 109.47211 * 273.44811 * 15 2 1 17 17 C 1.86299 * 109.46965 * 33.45031 * 15 2 1 18 18 C 1.86305 * 109.47050 * 153.44923 * 15 2 1 19 19 H 1.08003 * 119.99989 * 180.02562 * 1 2 3 20 20 H 1.07997 * 120.00543 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.06936 * 0.02562 * 4 3 2 22 22 H 1.07997 * 119.93595 * 180.24975 * 5 4 3 23 23 H 1.08003 * 119.85476 * 179.75979 * 6 5 4 24 24 H 1.09007 * 109.46864 * 125.02535 * 8 7 6 25 25 H 0.96695 * 114.00030 * 59.99972 * 9 8 7 26 26 H 1.07995 * 120.07393 * 180.02562 * 14 7 6 27 27 H 1.08996 * 109.46911 * 60.00002 * 16 15 2 28 28 H 1.08997 * 109.47142 * 179.97438 * 16 15 2 29 29 H 1.09000 * 109.47211 * 300.00002 * 16 15 2 30 30 H 1.09004 * 109.47016 * 60.00387 * 17 15 2 31 31 H 1.09002 * 109.47115 * 179.97438 * 17 15 2 32 32 H 1.08996 * 109.47128 * 299.99981 * 17 15 2 33 33 H 1.09002 * 109.47169 * 65.84407 * 18 15 2 34 34 H 1.09000 * 109.46991 * 185.83974 * 18 15 2 35 35 H 1.08996 * 109.47185 * 305.84080 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0646 1.2802 0.0000 4 6 3.1301 1.4740 0.8796 5 6 3.8191 2.6696 0.8712 6 6 3.4485 3.6786 0.0007 7 6 2.3894 3.4947 -0.8705 8 6 1.9922 4.5997 -1.8151 9 8 0.6826 5.0639 -1.4814 10 14 3.2052 6.0063 -1.6705 11 1 4.5662 5.5239 -2.0172 12 1 2.8142 7.0948 -2.6017 13 1 3.2024 6.5210 -0.2776 14 6 1.6956 2.3024 -0.8755 15 14 2.2596 -1.6177 0.0077 16 6 2.4787 -2.1999 1.7638 17 6 1.3010 -2.8929 -0.9544 18 6 3.9309 -1.3736 -0.7786 19 1 -0.5400 -0.9353 0.0004 20 1 -0.5401 0.9352 0.0004 21 1 3.4177 0.6884 1.5626 22 1 4.6466 2.8194 1.5488 23 1 3.9884 4.6140 0.0007 24 1 1.9942 4.2218 -2.8376 25 1 0.6066 5.4150 -0.5837 26 1 0.8694 2.1599 -1.5562 27 1 1.5009 -2.3427 2.2238 28 1 3.0233 -3.1441 1.7682 29 1 3.0396 -1.4538 2.3267 30 1 1.1729 -2.5522 -1.9818 31 1 1.8462 -3.8367 -0.9502 32 1 0.3232 -3.0357 -0.4943 33 1 4.5301 -0.7066 -0.1587 34 1 4.4343 -2.3362 -0.8683 35 1 3.8060 -0.9351 -1.7686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12175802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:28:05 Heat of formation + Delta-G solvation = -31.280056 kcal Electronic energy + Delta-G solvation = -14641.963937 eV Core-core repulsion = 12342.693099 eV Total energy + Delta-G solvation = -2299.270838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 236.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52728 -37.70812 -34.94134 -32.44377 -30.54342 -29.42574 -28.30190 -28.22684 -26.70762 -24.28965 -22.44901 -20.19284 -18.48070 -17.36655 -16.61391 -16.34658 -15.98769 -15.25570 -14.97470 -14.77266 -14.32692 -14.07514 -13.86146 -13.76994 -13.47872 -13.26668 -13.14004 -13.09236 -12.96347 -12.94157 -12.39079 -12.22290 -11.98634 -11.61460 -11.28691 -10.93294 -10.77980 -10.47087 -10.26962 -9.81100 -9.26650 0.11688 0.38894 1.13902 1.24359 1.41806 1.49287 1.84008 1.87454 2.00047 2.23353 2.63675 2.87710 3.51258 3.72791 3.89164 4.04864 4.12843 4.40921 4.55218 4.64552 4.77689 4.81770 4.84356 4.85993 4.87421 4.88459 4.89512 4.96390 5.07051 5.27980 5.45574 5.52163 5.56942 5.60050 5.66251 5.68026 5.83190 6.07642 6.64562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.388 4.388 3 C -0.040 4.040 4 C -0.124 4.124 5 C -0.115 4.115 6 C -0.147 4.147 7 C -0.123 4.123 8 C -0.083 4.083 9 O -0.553 6.553 10 Si 0.986 3.014 11 H -0.258 1.258 12 H -0.276 1.276 13 H -0.251 1.251 14 C -0.107 4.107 15 Si 1.106 2.894 16 C -0.457 4.457 17 C -0.460 4.460 18 C -0.460 4.460 19 H 0.122 0.878 20 H 0.085 0.915 21 H 0.143 0.857 22 H 0.145 0.855 23 H 0.128 0.872 24 H 0.119 0.881 25 H 0.388 0.612 26 H 0.121 0.879 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 -1.870 1.669 2.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.428 4.428 3 C -0.040 4.040 4 C -0.141 4.141 5 C -0.133 4.133 6 C -0.165 4.165 7 C -0.124 4.124 8 C -0.193 4.193 9 O -0.360 6.360 10 Si 0.811 3.189 11 H -0.182 1.182 12 H -0.201 1.201 13 H -0.175 1.175 14 C -0.125 4.125 15 Si 1.293 2.707 16 C -0.564 4.564 17 C -0.568 4.568 18 C -0.567 4.567 19 H 0.140 0.860 20 H 0.103 0.897 21 H 0.160 0.840 22 H 0.163 0.837 23 H 0.145 0.855 24 H 0.137 0.863 25 H 0.236 0.764 26 H 0.139 0.861 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.401 -1.304 1.134 2.225 hybrid contribution -0.333 0.104 0.352 0.495 sum 1.068 -1.200 1.486 2.188 Atomic orbital electron populations 1.24453 0.95645 1.02378 0.94412 1.28427 1.01354 1.08590 1.04393 1.19263 0.95614 0.93758 0.95366 1.21540 0.95289 0.98334 0.98982 1.21331 1.00097 0.93148 0.98719 1.21263 0.97850 1.00140 0.97197 1.20346 0.97060 0.96511 0.98439 1.25077 0.92336 1.01142 1.00740 1.86477 1.28977 1.83005 1.37588 0.85159 0.77011 0.76375 0.80389 1.18190 1.20092 1.17499 1.21249 0.99401 0.92303 0.99548 0.77499 0.64670 0.61719 0.66771 1.26229 1.04979 1.06330 1.18891 1.26262 1.09223 1.12331 1.08938 1.26292 1.18375 1.04764 1.07271 0.86030 0.89662 0.83973 0.83702 0.85474 0.86297 0.76357 0.86147 0.91043 0.90604 0.91029 0.91391 0.90596 0.90712 0.91204 0.90765 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.08 13.31 66.67 0.89 0.97 16 2 C -0.39 0.06 4.41 23.66 0.10 0.17 16 3 C -0.04 -0.12 5.26 -20.12 -0.11 -0.22 16 4 C -0.12 -0.15 8.66 22.52 0.19 0.05 16 5 C -0.12 -0.11 10.03 22.23 0.22 0.12 16 6 C -0.15 -0.31 8.66 22.32 0.19 -0.12 16 7 C -0.12 -0.40 5.35 -19.90 -0.11 -0.51 16 8 C -0.08 -0.11 2.80 71.24 0.20 0.09 16 9 O -0.55 -1.48 12.83 -148.98 -1.91 -3.39 16 10 Si 0.99 0.29 25.13 68.60 1.72 2.01 16 11 H -0.26 -0.35 7.11 99.48 0.71 0.36 16 12 H -0.28 -0.98 7.11 99.48 0.71 -0.27 16 13 H -0.25 0.02 7.04 99.48 0.70 0.72 16 14 C -0.11 -0.47 8.96 22.52 0.20 -0.27 16 15 Si 1.11 -4.89 11.16 68.60 0.77 -4.12 16 16 C -0.46 1.77 8.65 113.37 0.98 2.75 16 17 C -0.46 1.58 8.56 113.37 0.97 2.55 16 18 C -0.46 0.81 8.63 113.37 0.98 1.79 16 19 H 0.12 -0.55 7.37 -2.91 -0.02 -0.58 16 20 H 0.09 0.08 7.84 -2.91 -0.02 0.06 16 21 H 0.14 -0.43 6.98 -2.91 -0.02 -0.45 16 22 H 0.15 -0.53 8.06 -2.91 -0.02 -0.56 16 23 H 0.13 -0.07 4.84 -2.91 -0.01 -0.08 16 24 H 0.12 0.03 7.96 -2.38 -0.02 0.01 16 25 H 0.39 -1.40 8.70 -74.06 -0.64 -2.04 16 26 H 0.12 0.54 7.94 -2.91 -0.02 0.51 16 27 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 28 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 29 H 0.07 -0.29 7.61 -2.39 -0.02 -0.31 16 30 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.07 -0.32 7.69 -2.39 -0.02 -0.34 16 33 H 0.07 -0.10 7.48 -2.39 -0.02 -0.12 16 34 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 35 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 Total: 0.00 -9.05 293.92 6.46 -2.59 By element: Atomic # 1 Polarization: -5.61 SS G_CDS: 1.16 Total: -4.45 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 4.72 Total: 7.36 kcal Atomic # 8 Polarization: -1.48 SS G_CDS: -1.91 Total: -3.39 kcal Atomic # 14 Polarization: -4.60 SS G_CDS: 2.49 Total: -2.11 kcal Total: -9.05 6.46 -2.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12175802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.688 kcal (2) G-P(sol) polarization free energy of solvation -9.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds