Wall clock time and date at job start Mon Mar 8 2021 07:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32982 * 1 3 3 C 1.47067 * 119.99940 * 2 1 4 4 C 1.36228 * 125.95813 * 0.02562 * 3 2 1 5 5 C 1.40830 * 106.72441 * 179.97438 * 4 3 2 6 6 C 1.34791 * 107.06794 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.64265 * 179.97438 * 6 5 4 8 8 O 1.42897 * 109.47010 * 300.00192 * 7 6 5 9 9 Si 1.86296 * 109.47342 * 179.97438 * 7 6 5 10 10 H 1.48506 * 109.46952 * 60.00218 * 9 7 6 11 11 H 1.48496 * 109.47501 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47015 * 300.00370 * 9 7 6 13 13 O 1.34310 * 108.71537 * 359.73383 * 6 5 4 14 14 Si 1.86798 * 120.00057 * 180.02562 * 2 1 3 15 15 C 1.86300 * 109.47271 * 180.02562 * 14 2 1 16 16 C 1.86295 * 109.47420 * 60.00035 * 14 2 1 17 17 C 1.86299 * 109.47034 * 299.99803 * 14 2 1 18 18 H 1.07994 * 120.00240 * 359.97438 * 1 2 3 19 19 H 1.08005 * 120.00057 * 179.97438 * 1 2 3 20 20 H 1.08004 * 126.63635 * 359.95475 * 4 3 2 21 21 H 1.07996 * 126.46274 * 180.02562 * 5 4 3 22 22 H 1.09001 * 109.46712 * 60.00065 * 7 6 5 23 23 H 0.96701 * 114.00056 * 299.99201 * 8 7 6 24 24 H 1.09001 * 109.47076 * 300.00262 * 15 14 2 25 25 H 1.09004 * 109.47065 * 59.99756 * 15 14 2 26 26 H 1.09004 * 109.47701 * 179.97438 * 15 14 2 27 27 H 1.09000 * 109.47314 * 180.02562 * 16 14 2 28 28 H 1.09002 * 109.47039 * 300.00157 * 16 14 2 29 29 H 1.09001 * 109.47207 * 60.00126 * 16 14 2 30 30 H 1.08996 * 109.47367 * 299.99906 * 17 14 2 31 31 H 1.09002 * 109.46890 * 60.00170 * 17 14 2 32 32 H 1.09000 * 109.47207 * 180.02562 * 17 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3298 0.0000 0.0000 3 6 2.0651 1.2736 0.0000 4 6 1.5101 2.5177 0.0005 5 6 2.5767 3.4373 0.0009 6 6 3.7178 2.7198 0.0012 7 6 5.1131 3.2890 0.0011 8 8 5.2998 4.0923 -1.1658 9 14 6.3516 1.8973 0.0024 10 1 6.1580 1.0613 -1.2096 11 1 7.7265 2.4581 0.0017 12 1 6.1573 1.0630 1.2154 13 8 3.4054 1.4135 0.0069 14 14 2.2638 -1.6177 -0.0007 15 6 4.0955 -1.2773 0.0002 16 6 1.8138 -2.5940 -1.5222 17 6 1.8138 -2.5953 1.5200 18 1 -0.5400 0.9352 0.0004 19 1 -0.5400 -0.9353 -0.0004 20 1 0.4561 2.7532 0.0003 21 1 2.4957 4.5143 0.0017 22 1 5.2553 3.9022 0.8910 23 1 5.1881 3.6106 -1.9969 24 1 4.3591 -0.7051 -0.8893 25 1 4.3584 -0.7063 0.8907 26 1 4.6406 -2.2213 0.0003 27 1 2.3585 -3.5381 -1.5224 28 1 0.7422 -2.7932 -1.5223 29 1 2.0772 -2.0221 -2.4120 30 1 2.0771 -2.0241 2.4102 31 1 0.7421 -2.7944 1.5199 32 1 2.3591 -3.5390 1.5198 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12175806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:29:58 Heat of formation + Delta-G solvation = -44.456578 kcal Electronic energy + Delta-G solvation = -13970.269700 eV Core-core repulsion = 11635.509053 eV Total energy + Delta-G solvation = -2334.760648 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.094 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.47042 -37.98551 -35.25151 -33.58509 -30.58279 -29.53772 -28.47804 -28.45819 -26.31649 -23.39305 -22.04071 -20.42220 -18.54861 -17.58524 -17.31187 -16.37124 -15.69156 -15.01092 -14.70292 -14.38419 -14.21553 -13.98282 -13.93434 -13.77800 -13.68100 -13.36813 -13.25645 -13.13796 -13.12126 -12.78343 -12.13445 -11.97780 -11.81544 -10.91771 -10.87773 -10.85889 -10.67587 -10.49510 -8.90263 0.10269 1.03562 1.25304 1.46356 1.47644 1.59512 1.79475 1.81049 1.91632 1.96668 2.27732 2.51150 3.30503 3.65044 4.11767 4.15607 4.42601 4.53112 4.66718 4.69415 4.70599 4.71832 4.79664 4.81222 4.86375 4.91821 5.02201 5.26607 5.41904 5.49287 5.49482 5.59847 5.63156 6.17515 6.42626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.345 4.345 3 C 0.046 3.954 4 C -0.207 4.207 5 C -0.168 4.168 6 C -0.066 4.066 7 C -0.038 4.038 8 O -0.530 6.530 9 Si 0.945 3.055 10 H -0.245 1.245 11 H -0.247 1.247 12 H -0.243 1.243 13 O -0.164 6.164 14 Si 1.050 2.950 15 C -0.449 4.449 16 C -0.446 4.446 17 C -0.446 4.446 18 H 0.099 0.901 19 H 0.117 0.883 20 H 0.148 0.852 21 H 0.151 0.849 22 H 0.134 0.866 23 H 0.380 0.620 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -1.776 -0.096 2.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.386 4.386 3 C -0.004 4.004 4 C -0.226 4.226 5 C -0.187 4.187 6 C -0.116 4.116 7 C -0.148 4.148 8 O -0.335 6.335 9 Si 0.765 3.235 10 H -0.168 1.168 11 H -0.171 1.171 12 H -0.166 1.166 13 O -0.062 6.062 14 Si 1.241 2.759 15 C -0.557 4.557 16 C -0.554 4.554 17 C -0.554 4.554 18 H 0.118 0.882 19 H 0.135 0.865 20 H 0.166 0.834 21 H 0.168 0.832 22 H 0.151 0.849 23 H 0.228 0.772 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.140 -2.154 0.351 2.187 hybrid contribution -0.857 0.414 -0.360 1.017 sum -0.996 -1.740 -0.008 2.005 Atomic orbital electron populations 1.24337 0.94744 1.02650 0.93387 1.27081 0.99982 1.05947 1.05540 1.20719 0.79814 0.95179 1.04713 1.21923 1.00398 0.91592 1.08714 1.21500 0.91037 1.00844 1.05333 1.22881 0.98112 0.80943 1.09644 1.24274 0.94240 1.03712 0.92571 1.86559 1.92834 1.38844 1.15306 0.85746 0.78202 0.76247 0.83262 1.16758 1.17079 1.16566 1.84036 1.23930 1.26539 1.71688 0.78368 0.66432 0.63155 0.67898 1.26161 1.19656 1.04838 1.05002 1.26098 1.05469 1.08788 1.15031 1.26098 1.05457 1.08807 1.15037 0.88239 0.86541 0.83424 0.83162 0.84894 0.77191 0.91000 0.90917 0.91007 0.90798 0.91119 0.91052 0.91034 0.91120 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.14 13.52 28.91 0.39 0.53 16 2 C -0.34 -0.04 4.69 -37.82 -0.18 -0.22 16 3 C 0.05 0.10 6.80 -36.73 -0.25 -0.15 16 4 C -0.21 -0.44 10.21 -39.32 -0.40 -0.85 16 5 C -0.17 -0.36 10.76 -39.82 -0.43 -0.79 16 6 C -0.07 -0.13 6.22 -35.53 -0.22 -0.35 16 7 C -0.04 -0.01 2.98 36.00 0.11 0.10 16 8 O -0.53 -0.22 12.87 -35.23 -0.45 -0.68 16 9 Si 0.95 0.33 27.38 -169.99 -4.65 -4.32 16 10 H -0.24 -0.20 7.11 56.52 0.40 0.20 16 11 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 12 H -0.24 -0.28 7.11 56.52 0.40 0.12 16 13 O -0.16 -0.41 6.29 4.44 0.03 -0.38 16 14 Si 1.05 -1.68 12.38 -169.99 -2.10 -3.79 16 15 C -0.45 -0.03 7.30 101.05 0.74 0.71 16 16 C -0.45 0.65 8.65 101.05 0.87 1.52 16 17 C -0.45 0.62 8.65 101.05 0.87 1.49 16 18 H 0.10 -0.15 6.81 -52.49 -0.36 -0.50 16 19 H 0.12 -0.39 7.73 -52.48 -0.41 -0.80 16 20 H 0.15 0.08 7.20 -52.48 -0.38 -0.30 16 21 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 22 H 0.13 -0.17 7.96 -51.93 -0.41 -0.58 16 23 H 0.38 -1.01 8.70 45.56 0.40 -0.62 16 24 H 0.07 0.05 7.53 -51.93 -0.39 -0.34 16 25 H 0.07 0.06 7.52 -51.93 -0.39 -0.33 16 26 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 30 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 LS Contribution 277.29 15.07 4.18 4.18 Total: 0.00 -4.30 277.29 -5.55 -9.85 By element: Atomic # 1 Polarization: -2.82 SS G_CDS: -4.05 Total: -6.87 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 1.51 Total: 2.01 kcal Atomic # 8 Polarization: -0.63 SS G_CDS: -0.43 Total: -1.06 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: -6.76 Total: -8.11 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -4.30 -5.55 -9.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12175806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.604 kcal (2) G-P(sol) polarization free energy of solvation -4.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds