Wall clock time and date at job start Mon Mar 8 2021 07:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47816 * 120.00097 * 2 1 4 4 C 1.39517 * 120.14045 * 114.34715 * 3 2 1 5 5 C 1.37993 * 119.85456 * 179.97438 * 4 3 2 6 6 C 1.38318 * 120.14312 * 0.02927 * 5 4 3 7 7 C 1.38371 * 120.28666 * 359.97148 * 6 5 4 8 8 C 1.37950 * 120.13958 * 359.74951 * 7 6 5 9 9 C 1.50701 * 120.07260 * 180.27491 * 8 7 6 10 10 O 1.42904 * 109.47201 * 104.37073 * 9 8 7 11 11 Si 1.86299 * 109.47038 * 344.37259 * 9 8 7 12 12 H 1.48507 * 109.47023 * 60.00052 * 11 9 8 13 13 H 1.48503 * 109.47263 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47364 * 300.00072 * 11 9 8 15 15 Si 1.86800 * 119.99984 * 180.02562 * 2 1 3 16 16 C 1.86298 * 109.47323 * 359.97438 * 15 2 1 17 17 C 1.86308 * 109.47069 * 240.00016 * 15 2 1 18 18 C 1.86297 * 109.47327 * 120.00141 * 15 2 1 19 19 H 1.08001 * 119.99806 * 354.71149 * 1 2 3 20 20 H 1.08004 * 119.99707 * 174.70379 * 1 2 3 21 21 H 1.07999 * 120.07296 * 359.96571 * 4 3 2 22 22 H 1.08000 * 119.92696 * 179.97438 * 5 4 3 23 23 H 1.08001 * 119.85928 * 179.97438 * 6 5 4 24 24 H 1.08004 * 119.92715 * 180.02562 * 7 6 5 25 25 H 1.08997 * 109.47320 * 224.37312 * 9 8 7 26 26 H 0.96694 * 114.00155 * 300.00645 * 10 9 8 27 27 H 1.08997 * 109.46809 * 300.00317 * 16 15 2 28 28 H 1.08998 * 109.46894 * 60.00011 * 16 15 2 29 29 H 1.08994 * 109.47133 * 180.02562 * 16 15 2 30 30 H 1.08994 * 109.47204 * 180.02562 * 17 15 2 31 31 H 1.09005 * 109.46714 * 300.00202 * 17 15 2 32 32 H 1.08997 * 109.47170 * 59.99617 * 17 15 2 33 33 H 1.08998 * 109.46916 * 300.00005 * 18 15 2 34 34 H 1.09006 * 109.47369 * 59.99871 * 18 15 2 35 35 H 1.09003 * 109.47585 * 179.97438 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 2.8458 1.6381 1.0992 5 6 3.5337 2.8343 1.0927 6 6 3.4497 3.6779 -0.0001 7 6 2.6768 3.3288 -1.0935 8 6 1.9888 2.1331 -1.1019 9 6 1.1524 1.7515 -2.2960 10 8 1.8362 0.7541 -3.0574 11 14 0.8644 3.2546 -3.3583 12 1 2.1696 3.7922 -3.8195 13 1 0.0408 2.8785 -4.5353 14 1 0.1539 4.2912 -2.5672 15 14 2.2597 -1.6177 -0.0007 16 6 1.0491 -3.0338 -0.0006 17 6 3.3308 -1.7171 1.5204 18 6 3.3308 -1.7158 -1.5218 19 1 -0.5400 0.9314 0.0862 20 1 -0.5400 -0.9314 -0.0863 21 1 2.9117 0.9805 1.9534 22 1 4.1384 3.1127 1.9432 23 1 3.9897 4.6132 -0.0002 24 1 2.6157 3.9917 -1.9439 25 1 0.1944 1.3569 -1.9575 26 1 2.6984 1.0367 -3.3915 27 1 0.4228 -2.9762 0.8896 28 1 0.4221 -2.9758 -0.8903 29 1 1.5941 -3.9777 -0.0005 30 1 3.8761 -2.6608 1.5198 31 1 4.0390 -0.8885 1.5208 32 1 2.7041 -1.6597 2.4104 33 1 2.7041 -1.6576 -2.4118 34 1 4.0391 -0.8873 -1.5215 35 1 3.8761 -2.6596 -1.5221 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12175814.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:31:31 Heat of formation + Delta-G solvation = -38.194310 kcal Electronic energy + Delta-G solvation = -15210.662775 eV Core-core repulsion = 12911.092113 eV Total energy + Delta-G solvation = -2299.570663 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 236.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58033 -37.44219 -34.88726 -32.48055 -30.55477 -29.44132 -28.30109 -28.26330 -26.73584 -23.87063 -22.45061 -20.51021 -18.22470 -17.15802 -16.74340 -16.35739 -15.55414 -15.50792 -14.90143 -14.69737 -14.44543 -14.07888 -13.92977 -13.72407 -13.35893 -13.33401 -13.19082 -13.09893 -12.98267 -12.83654 -12.48210 -12.11183 -11.95592 -11.65191 -11.08089 -10.85381 -10.81613 -10.29424 -10.16425 -9.80967 -9.25118 0.28951 0.40418 1.13399 1.20500 1.41752 1.53835 1.83992 1.92692 1.95323 2.21439 2.64454 2.88342 3.57313 3.81092 3.93658 4.01328 4.17392 4.48683 4.58308 4.70079 4.72576 4.75536 4.77579 4.78746 4.82757 4.91934 4.98698 4.99968 5.08582 5.31759 5.49012 5.54481 5.56550 5.61255 5.65133 5.74015 5.83296 6.09643 6.62237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.359 4.359 3 C -0.006 4.006 4 C -0.121 4.121 5 C -0.110 4.110 6 C -0.123 4.123 7 C -0.125 4.125 8 C -0.118 4.118 9 C -0.077 4.077 10 O -0.530 6.530 11 Si 0.942 3.058 12 H -0.252 1.252 13 H -0.254 1.254 14 H -0.251 1.251 15 Si 1.053 2.947 16 C -0.450 4.450 17 C -0.451 4.451 18 C -0.441 4.441 19 H 0.092 0.908 20 H 0.106 0.894 21 H 0.128 0.872 22 H 0.124 0.876 23 H 0.123 0.877 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.373 0.627 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.598 -0.007 0.669 0.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.400 4.400 3 C -0.006 4.006 4 C -0.139 4.139 5 C -0.128 4.128 6 C -0.141 4.141 7 C -0.143 4.143 8 C -0.118 4.118 9 C -0.188 4.188 10 O -0.335 6.335 11 Si 0.765 3.235 12 H -0.176 1.176 13 H -0.178 1.178 14 H -0.175 1.175 15 Si 1.244 2.756 16 C -0.558 4.558 17 C -0.558 4.558 18 C -0.549 4.549 19 H 0.110 0.890 20 H 0.124 0.876 21 H 0.146 0.854 22 H 0.142 0.858 23 H 0.141 0.859 24 H 0.139 0.861 25 H 0.135 0.865 26 H 0.220 0.780 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.126 0.451 0.293 0.553 hybrid contribution 0.529 0.260 0.282 0.653 sum 0.402 0.711 0.575 0.999 Atomic orbital electron populations 1.24203 0.95451 1.01824 0.95734 1.27847 1.00900 1.07929 1.03358 1.18797 0.95918 0.93207 0.92703 1.21361 0.97250 0.97167 0.98156 1.21160 0.99004 0.94355 0.98317 1.21117 0.99323 0.99936 0.93692 1.21061 0.97943 0.96288 0.98996 1.20328 1.00115 0.94631 0.96727 1.24957 0.98159 1.01872 0.93782 1.86525 1.36047 1.40083 1.70817 0.85826 0.81202 0.76618 0.79845 1.17628 1.17759 1.17454 0.78309 0.66329 0.63261 0.67720 1.26156 1.11418 1.13732 1.04486 1.26185 1.09807 1.04571 1.15239 1.26019 1.09514 1.03691 1.15633 0.89008 0.87562 0.85449 0.85829 0.85896 0.86126 0.86546 0.78046 0.91237 0.90984 0.90971 0.91069 0.91076 0.91253 0.90244 0.91478 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.04 11.82 28.82 0.34 0.38 16 2 C -0.36 -0.04 3.54 -37.57 -0.13 -0.17 16 3 C -0.01 -0.01 4.90 -105.01 -0.51 -0.52 16 4 C -0.12 -0.10 9.22 -39.19 -0.36 -0.46 16 5 C -0.11 -0.06 10.03 -39.64 -0.40 -0.46 16 6 C -0.12 -0.08 10.04 -39.50 -0.40 -0.47 16 7 C -0.13 -0.12 8.65 -39.64 -0.34 -0.46 16 8 C -0.12 -0.13 5.27 -104.24 -0.55 -0.68 16 9 C -0.08 -0.02 2.13 36.01 0.08 0.06 16 10 O -0.53 -0.10 12.54 -35.23 -0.44 -0.54 16 11 Si 0.94 0.15 25.52 -169.99 -4.34 -4.19 16 12 H -0.25 -0.01 6.71 56.52 0.38 0.37 16 13 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 14 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 15 Si 1.05 -1.40 12.34 -169.99 -2.10 -3.50 16 16 C -0.45 0.44 7.88 101.05 0.80 1.23 16 17 C -0.45 0.40 8.21 101.05 0.83 1.23 16 18 C -0.44 0.08 8.65 101.05 0.87 0.96 16 19 H 0.09 -0.02 7.90 -52.49 -0.41 -0.44 16 20 H 0.11 -0.16 7.07 -52.48 -0.37 -0.54 16 21 H 0.13 -0.06 7.08 -52.49 -0.37 -0.43 16 22 H 0.12 -0.15 8.06 -52.49 -0.42 -0.58 16 23 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 24 H 0.12 -0.03 4.90 -52.48 -0.26 -0.28 16 25 H 0.12 0.00 5.87 -51.93 -0.30 -0.30 16 26 H 0.37 -0.94 8.70 45.56 0.40 -0.54 16 27 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 29 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 31 H 0.07 -0.05 7.25 -51.93 -0.38 -0.43 16 32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 33 H 0.08 0.03 7.64 -51.93 -0.40 -0.36 16 34 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 35 H 0.06 -0.03 7.96 -51.93 -0.41 -0.44 16 LS Contribution 289.93 15.07 4.37 4.37 Total: 0.00 -3.48 289.93 -6.94 -10.42 By element: Atomic # 1 Polarization: -2.55 SS G_CDS: -4.65 Total: -7.20 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 0.22 Total: 0.63 kcal Atomic # 8 Polarization: -0.10 SS G_CDS: -0.44 Total: -0.54 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: -6.44 Total: -7.68 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -3.48 -6.94 -10.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12175814.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.769 kcal (2) G-P(sol) polarization free energy of solvation -3.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds